Wall clock time and date at job start Tue Mar 31 2020 10:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47298 * 2 1 4 4 O 1.42902 * 109.47166 * 119.99670 * 2 1 3 5 5 C 1.35989 * 117.00020 * 150.00036 * 4 2 1 6 6 C 1.38898 * 120.06407 * 90.00069 * 5 4 2 7 7 F 1.35096 * 120.04553 * 0.02562 * 6 5 4 8 8 C 1.38322 * 119.91698 * 179.97438 * 6 5 4 9 9 C 1.38292 * 120.04661 * 359.97438 * 8 6 5 10 10 C 1.50699 * 119.93134 * 179.97438 * 9 8 6 11 11 N 1.46906 * 109.47140 * 90.00074 * 10 9 8 12 12 C 1.46897 * 110.99771 * 293.95489 * 11 10 9 13 13 C 1.46898 * 110.99890 * 170.00136 * 11 10 9 14 14 C 1.50700 * 109.47068 * 190.00323 * 13 11 10 15 15 H 1.08005 * 120.00161 * 359.97438 * 14 13 11 16 16 C 1.37881 * 120.00285 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00008 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00213 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47089 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47476 * 119.99553 * 18 16 14 21 21 H 1.48498 * 109.47129 * 239.99832 * 18 16 14 22 22 C 1.38216 * 120.13831 * 0.25806 * 9 8 6 23 23 C 1.38324 * 120.07612 * 359.48763 * 22 9 8 24 24 Cl 1.73606 * 120.02457 * 180.25558 * 23 22 9 25 25 H 1.09004 * 109.47058 * 299.99917 * 1 2 3 26 26 H 1.08996 * 109.46985 * 60.00438 * 1 2 3 27 27 H 1.09001 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47266 * 239.99629 * 2 1 3 29 29 H 1.08998 * 109.46966 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46747 * 299.99644 * 3 2 1 31 31 H 1.08999 * 109.47265 * 59.99628 * 3 2 1 32 32 H 1.07997 * 119.97863 * 180.02562 * 8 6 5 33 33 H 1.09004 * 109.47103 * 330.00175 * 10 9 8 34 34 H 1.09000 * 109.47247 * 210.00053 * 10 9 8 35 35 H 1.08997 * 109.47293 * 60.00221 * 12 11 10 36 36 H 1.09000 * 109.46769 * 179.97438 * 12 11 10 37 37 H 1.08999 * 109.47106 * 299.99134 * 12 11 10 38 38 H 1.09004 * 109.47244 * 310.00126 * 13 11 10 39 39 H 1.08994 * 109.47665 * 70.00225 * 13 11 10 40 40 H 0.96995 * 120.00203 * 180.02562 * 17 16 14 41 41 H 1.07995 * 119.96603 * 179.74262 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2015 -1.3144 1.0651 6 6 4.3797 -0.6405 1.3600 7 9 4.3401 0.6527 1.7490 8 6 5.5936 -1.2954 1.2561 9 6 5.6342 -2.6196 0.8595 10 6 6.9582 -3.3305 0.7465 11 7 7.2870 -3.9606 2.0322 12 6 7.5214 -2.9478 3.0701 13 6 8.4441 -4.8557 1.8991 14 6 8.6009 -5.6650 3.1607 15 1 7.9102 -5.5278 3.9796 16 6 9.6266 -6.5799 3.2699 17 7 10.4680 -6.7466 2.2729 18 14 9.8213 -7.5825 4.8339 19 1 8.7548 -7.2089 5.7974 20 1 9.7138 -9.0282 4.5118 21 1 11.1505 -7.3071 5.4361 22 6 4.4634 -3.2908 0.5609 23 6 3.2461 -2.6427 0.6681 24 17 1.7760 -3.4891 0.2990 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 6.5102 -0.7725 1.4855 33 1 7.7351 -2.6121 0.4848 34 1 6.8951 -4.0954 -0.0274 35 1 6.6236 -2.3429 3.1969 36 1 7.7623 -3.4415 4.0116 37 1 8.3519 -2.3078 2.7722 38 1 8.2893 -5.5265 1.0540 39 1 9.3441 -4.2638 1.7330 40 1 11.1893 -7.3905 2.3496 41 1 4.4987 -4.3237 0.2474 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250281578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:46 Heat of formation + Delta-G solvation = -82.871773 kcal Electronic energy + Delta-G solvation = -24027.137726 eV Core-core repulsion = 20268.042740 eV Total energy + Delta-G solvation = -3759.094986 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.06381 -41.16254 -39.51866 -37.96020 -37.33844 -34.77751 -34.10861 -31.73504 -31.64404 -29.08730 -28.24156 -27.90145 -25.69150 -24.14640 -23.40250 -22.35849 -21.79665 -19.36597 -18.59813 -18.22736 -17.95035 -17.25726 -16.79081 -16.31286 -16.04574 -15.95419 -15.69440 -15.58766 -15.51398 -15.06421 -14.35974 -14.24008 -14.05873 -13.79703 -13.46018 -13.39105 -13.18719 -13.08117 -13.02931 -12.88562 -12.66132 -12.49723 -12.47502 -12.24455 -12.16488 -12.05095 -11.87051 -11.77377 -11.26762 -11.05520 -10.60556 -9.86669 -9.73432 -9.02863 -8.19213 -6.28052 -0.28859 -0.14237 0.90251 1.41898 1.43436 1.56160 2.02241 2.41108 2.46463 3.02540 3.14113 3.38329 3.61321 3.73071 3.90231 3.94592 4.04130 4.05502 4.16766 4.31017 4.48581 4.55580 4.65702 4.69920 4.72485 4.75688 4.82285 4.83069 4.89561 4.90812 5.08229 5.20921 5.21502 5.27969 5.28520 5.33175 5.43993 5.66523 6.05589 6.28974 6.30099 6.59504 6.87870 7.41418 8.91730 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.023149 B = 0.002996 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.288406 B = 9343.165891 C = 9946.809870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.077 3.923 3 C -0.175 4.175 4 O -0.328 6.328 5 C 0.066 3.934 6 C 0.086 3.914 7 F -0.128 7.128 8 C -0.126 4.126 9 C -0.032 4.032 10 C 0.090 3.910 11 N -0.543 5.543 12 C 0.037 3.963 13 C 0.207 3.793 14 C -0.521 4.521 15 H 0.061 0.939 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.086 4.086 23 C -0.035 4.035 24 Cl -0.041 7.041 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.155 0.845 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.012 0.988 39 H -0.031 1.031 40 H 0.264 0.736 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.991 14.808 -7.231 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.022 3.978 3 C -0.232 4.232 4 O -0.246 6.246 5 C 0.020 3.980 6 C 0.066 3.934 7 F -0.107 7.107 8 C -0.146 4.146 9 C -0.033 4.033 10 C -0.037 4.037 11 N -0.267 5.267 12 C -0.111 4.111 13 C 0.081 3.919 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.194 4.194 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.189 1.189 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.105 4.105 23 C -0.062 4.062 24 Cl -0.012 7.012 25 H 0.084 0.916 26 H 0.115 0.885 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.173 0.827 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.030 0.970 39 H -0.013 1.013 40 H 0.073 0.927 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.504 14.421 -7.008 24.484 hybrid contribution 1.230 -0.077 0.367 1.286 sum -17.274 14.343 -6.641 23.414 Atomic orbital electron populations 1.21873 0.91184 1.03161 1.03873 1.22699 0.96486 0.92544 0.86047 1.22369 1.01361 0.95719 1.03739 1.86157 1.32010 1.68666 1.37752 1.18312 0.85701 0.90336 1.03684 1.17758 0.93263 0.79491 1.02894 1.91491 1.97174 1.33565 1.88433 1.21219 0.97170 0.95016 1.01153 1.19553 0.95099 0.92432 0.96177 1.21078 0.92150 0.97509 0.92981 1.62046 1.40093 1.18981 1.05590 1.22275 0.99227 0.93700 0.95930 1.19422 0.85432 0.90438 0.96595 1.21491 1.12059 1.20901 1.01503 0.92074 1.25833 0.95421 0.98298 0.99881 1.70069 1.17401 1.36630 1.33255 0.85401 0.78013 0.78280 0.79340 1.18950 1.20463 1.20528 1.21070 0.89078 1.01125 0.99271 1.21056 0.89181 0.92259 1.03736 1.98370 1.33742 1.76390 1.92657 0.91608 0.88452 0.92137 0.91686 0.93278 0.89063 0.91762 0.82728 0.93239 0.89434 0.91011 0.92508 0.96258 0.97009 1.01343 0.92706 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.56 71.98 0.69 -1.29 16 2 C 0.08 1.40 3.40 30.60 0.10 1.50 16 3 C -0.17 -2.82 9.22 71.98 0.66 -2.15 16 4 O -0.33 -8.05 9.03 -93.43 -0.84 -8.90 16 5 C 0.07 1.69 5.56 22.54 0.13 1.81 16 6 C 0.09 2.20 7.10 22.45 0.16 2.36 16 7 F -0.13 -3.29 15.33 44.97 0.69 -2.60 16 8 C -0.13 -3.15 7.94 22.30 0.18 -2.98 16 9 C -0.03 -0.86 4.88 -19.86 -0.10 -0.95 16 10 C 0.09 2.88 5.12 85.56 0.44 3.32 16 11 N -0.54 -22.07 4.74 -931.65 -4.42 -26.49 16 12 C 0.04 1.36 8.95 127.69 1.14 2.50 16 13 C 0.21 10.52 4.72 85.56 0.40 10.92 16 14 C -0.52 -28.82 8.46 25.60 0.22 -28.60 16 15 H 0.06 3.36 7.12 -2.91 -0.02 3.34 16 16 C 0.00 0.21 5.46 84.66 0.46 0.67 16 17 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 18 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 C -0.09 -2.24 9.48 22.28 0.21 -2.03 16 23 C -0.03 -0.88 6.33 22.40 0.14 -0.74 16 24 Cl -0.04 -0.93 28.50 -2.72 -0.08 -1.01 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 1.16 7.91 -2.39 -0.02 1.14 16 29 H 0.05 0.92 6.42 -2.39 -0.02 0.91 16 30 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.16 3.46 8.03 -2.91 -0.02 3.43 16 33 H 0.05 1.49 8.06 -2.38 -0.02 1.47 16 34 H 0.09 2.73 7.87 -2.39 -0.02 2.71 16 35 H 0.07 2.28 6.16 -2.39 -0.01 2.26 16 36 H 0.06 2.31 6.76 -2.39 -0.02 2.30 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.01 0.64 7.93 -2.38 -0.02 0.62 16 39 H -0.03 -1.70 8.12 -2.39 -0.02 -1.72 16 40 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -61.89 357.52 3.52 -58.37 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.02 Total: 5.09 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 4.84 Total: -15.66 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -4.14 Total: -81.10 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.84 Total: -8.90 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.69 Total: -2.60 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -61.89 3.52 -58.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250281578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.498 kcal (2) G-P(sol) polarization free energy of solvation -61.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds