Wall clock time and date at job start Tue Mar 31 2020 10:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47549 * 2 1 4 4 H 1.08999 * 109.46743 * 54.35863 * 3 2 1 5 5 C 1.50695 * 109.47418 * 174.36134 * 3 2 1 6 6 H 1.07995 * 120.00110 * 120.00039 * 5 3 2 7 7 C 1.37883 * 119.99700 * 300.00220 * 5 3 2 8 8 N 1.31514 * 120.00046 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99674 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47651 * 89.99773 * 9 7 5 11 11 H 1.48500 * 109.46865 * 209.99788 * 9 7 5 12 12 H 1.48506 * 109.47096 * 329.99455 * 9 7 5 13 13 N 1.46896 * 109.46751 * 294.36592 * 3 2 1 14 14 C 1.46905 * 111.00082 * 152.94680 * 13 3 2 15 15 C 1.50695 * 109.47146 * 174.67380 * 14 13 3 16 16 O 1.21248 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.47173 * 119.99683 * 179.97438 * 15 14 13 18 18 C 1.39850 * 120.17132 * 359.72387 * 17 15 14 19 19 C 1.37891 * 119.82265 * 179.76067 * 18 17 15 20 20 C 1.38405 * 120.17150 * 0.53785 * 19 18 17 21 21 C 1.50694 * 119.82355 * 179.71510 * 20 19 18 22 22 F 1.39899 * 109.47420 * 269.97552 * 21 20 19 23 23 F 1.39894 * 109.47311 * 29.97784 * 21 20 19 24 24 F 1.39899 * 109.47151 * 149.97898 * 21 20 19 25 25 C 1.38401 * 120.34740 * 359.69215 * 20 19 18 26 26 C 1.37888 * 120.17412 * 0.04708 * 25 20 19 27 27 H 1.08999 * 109.47388 * 179.31288 * 1 2 3 28 28 H 1.08996 * 109.47139 * 299.31696 * 1 2 3 29 29 H 1.09008 * 109.47127 * 59.31396 * 1 2 3 30 30 H 1.09001 * 109.47445 * 240.00143 * 2 1 3 31 31 H 1.09003 * 109.47157 * 120.00080 * 2 1 3 32 32 H 0.97003 * 119.99473 * 180.02562 * 8 7 5 33 33 H 1.00895 * 111.00807 * 28.98454 * 13 3 2 34 34 H 1.09004 * 109.46602 * 294.67147 * 14 13 3 35 35 H 1.09001 * 109.47152 * 54.66338 * 14 13 3 36 36 H 1.08002 * 120.08661 * 0.02562 * 18 17 15 37 37 H 1.07999 * 119.91065 * 180.24791 * 19 18 17 38 38 H 1.08006 * 119.91249 * 180.02562 * 25 20 19 39 39 H 1.08003 * 120.08882 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9847 0.8352 5 6 3.5406 1.4448 0.1396 6 1 4.1540 1.8864 -0.6317 7 6 4.1302 0.8829 1.2521 8 7 3.3832 0.3455 2.1916 9 14 5.9901 0.8863 1.4255 10 1 6.4196 2.1218 2.1286 11 1 6.4165 -0.3018 2.2076 12 1 6.6130 0.8416 0.0781 13 7 1.6646 2.0946 -1.2616 14 6 1.5366 3.5474 -1.0856 15 6 1.2803 4.1947 -2.4222 16 8 1.2116 3.5131 -3.4226 17 6 1.1135 5.6541 -2.5130 18 6 1.1864 6.4430 -1.3606 19 6 1.0339 7.8102 -1.4547 20 6 0.7982 8.4009 -2.6840 21 6 0.6265 9.8951 -2.7769 22 9 -0.7257 10.2195 -2.6235 23 9 1.3719 10.5138 -1.7677 24 9 1.0737 10.3392 -4.0259 25 6 0.7200 7.6264 -3.8284 26 6 0.8756 6.2585 -3.7515 27 1 -0.3634 -1.0276 -0.0123 28 1 -0.3633 0.5032 0.8960 29 1 -0.3634 0.5245 -0.8838 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7981 -0.0494 2.9745 33 1 0.8144 1.6992 -1.6341 34 1 0.7052 3.7601 -0.4136 35 1 2.4583 3.9445 -0.6602 36 1 1.3658 5.9830 -0.4001 37 1 1.0939 8.4212 -0.5662 38 1 0.5363 8.0948 -4.7841 39 1 0.8139 5.6555 -4.6454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:41 Heat of formation + Delta-G solvation = -163.211907 kcal Electronic energy + Delta-G solvation = -25447.995850 eV Core-core repulsion = 21133.620374 eV Total energy + Delta-G solvation = -4314.375476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.47304 -47.98576 -47.93347 -40.19288 -38.42512 -36.14667 -32.86121 -32.34788 -31.57277 -31.06384 -27.90127 -26.69088 -25.13987 -23.16506 -22.98992 -22.23704 -19.86082 -19.58464 -18.84084 -18.78019 -18.64455 -16.76180 -16.31183 -15.87569 -15.24415 -15.16882 -14.80902 -14.77016 -14.70766 -14.45817 -14.37773 -14.18227 -14.08705 -13.96579 -13.75986 -13.61512 -13.40857 -12.94973 -12.61696 -12.19826 -12.12910 -11.97596 -11.55862 -11.38162 -11.20566 -10.88255 -10.68016 -10.08577 -10.00678 -9.69533 -9.52562 -9.44374 -9.33779 -9.15478 -8.39739 -7.34267 -6.02102 -4.06709 0.14441 0.93333 2.24942 2.31731 3.29098 3.35190 3.36611 3.36848 3.41754 3.68963 3.93580 4.09702 4.41257 4.44420 4.47869 4.91504 4.95005 5.19359 5.24273 5.31635 5.34659 5.55655 5.75961 5.80980 5.82696 6.00223 6.03854 6.12598 6.15176 6.34019 6.37447 6.79783 6.99126 7.09465 7.37031 7.65743 7.72980 7.85718 8.17659 8.32701 8.65151 9.01354 9.58825 11.03114 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.017754 B = 0.002806 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.747473 B = 9975.159152 C =10739.211833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.005 0.995 5 C -0.497 4.497 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.676 5.676 14 C 0.024 3.976 15 C 0.388 3.612 16 O -0.428 6.428 17 C -0.125 4.125 18 C -0.074 4.074 19 C -0.082 4.082 20 C -0.165 4.165 21 C 0.508 3.492 22 F -0.176 7.176 23 F -0.175 7.175 24 F -0.177 7.177 25 C -0.084 4.084 26 C -0.069 4.069 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.101 0.899 32 H 0.260 0.740 33 H 0.325 0.675 34 H 0.053 0.947 35 H 0.112 0.888 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 17.000 -7.633 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.308 5.308 14 C -0.106 4.106 15 C 0.263 3.737 16 O -0.301 6.301 17 C -0.126 4.126 18 C -0.092 4.092 19 C -0.100 4.100 20 C -0.166 4.166 21 C 0.454 3.546 22 F -0.157 7.157 23 F -0.157 7.157 24 F -0.158 7.158 25 C -0.102 4.102 26 C -0.087 4.087 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.143 0.857 34 H 0.071 0.929 35 H 0.129 0.871 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.189 16.596 -8.218 19.865 hybrid contribution 0.153 0.441 0.752 0.884 sum -7.036 17.036 -7.467 19.887 Atomic orbital electron populations 1.21891 0.99558 0.99757 0.99645 1.21782 0.91278 1.00179 1.03284 1.19196 0.95651 0.90180 0.83712 0.97775 1.21215 0.91166 1.36893 1.04273 0.91992 1.24956 0.98172 0.95486 0.95822 1.69868 1.34763 1.39349 1.09531 0.86545 0.85663 0.77394 0.78102 1.20839 1.21326 1.19862 1.60487 1.38254 0.99677 1.32385 1.22165 1.02468 0.92920 0.93065 1.22881 0.72275 0.86692 0.91840 1.90498 1.35424 1.65413 1.38765 1.21088 1.00836 0.96516 0.94200 1.21594 0.95825 0.92714 0.99031 1.20949 0.97185 0.95481 0.96396 1.20197 1.08640 0.90930 0.96881 1.18318 0.74065 0.88527 0.73713 1.93235 1.33216 1.93957 1.95320 1.93202 1.76780 1.84914 1.60781 1.93196 1.89183 1.91022 1.42396 1.20905 0.97872 0.93817 0.97571 1.21446 0.95313 0.93863 0.98041 0.94260 0.93835 0.94625 0.93875 0.88063 0.93008 0.85665 0.92942 0.87063 0.83289 0.84030 0.84238 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.77 37.16 0.36 -2.48 16 2 C -0.13 -2.91 5.35 -26.73 -0.14 -3.05 16 3 C 0.22 5.21 2.02 -68.87 -0.14 5.07 16 4 H 0.00 0.12 7.83 -51.93 -0.41 -0.29 16 5 C -0.50 -13.22 8.64 -34.44 -0.30 -13.52 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -24.61 11.29 55.43 0.63 -23.98 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.68 -13.98 5.83 -109.22 -0.64 -14.62 16 14 C 0.02 0.40 4.54 -4.98 -0.02 0.38 16 15 C 0.39 5.93 7.17 -30.68 -0.22 5.71 16 16 O -0.43 -7.74 16.31 5.59 0.09 -7.65 16 17 C -0.12 -1.51 5.87 -105.06 -0.62 -2.13 16 18 C -0.07 -0.75 9.47 -39.11 -0.37 -1.12 16 19 C -0.08 -0.76 9.38 -39.65 -0.37 -1.13 16 20 C -0.17 -1.58 5.46 -104.50 -0.57 -2.15 16 21 C 0.51 4.76 3.36 36.00 0.12 4.88 16 22 F -0.18 -1.72 17.30 2.25 0.04 -1.68 16 23 F -0.18 -1.70 16.45 2.25 0.04 -1.66 16 24 F -0.18 -1.69 16.45 2.25 0.04 -1.65 16 25 C -0.08 -0.78 9.38 -39.65 -0.37 -1.15 16 26 C -0.07 -0.74 9.60 -39.11 -0.38 -1.12 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.61 6.45 -51.92 -0.33 0.27 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.33 6.38 6.39 -39.29 -0.25 6.13 16 34 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.11 1.91 7.95 -51.93 -0.41 1.50 16 36 H 0.15 1.33 7.05 -52.49 -0.37 0.96 16 37 H 0.14 1.04 7.59 -52.49 -0.40 0.64 16 38 H 0.14 1.02 7.59 -52.48 -0.40 0.62 16 39 H 0.15 1.50 7.65 -52.48 -0.40 1.10 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -29.10 342.84 -7.29 -36.38 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.51 Total: 4.17 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -3.11 Total: -10.39 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: -0.01 Total: -38.60 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.09 Total: -7.65 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.11 Total: -4.99 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.10 -7.29 -36.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.829 kcal (2) G-P(sol) polarization free energy of solvation -29.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds