Wall clock time and date at job start Tue Mar 31 2020 10:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47549 * 2 1 4 4 H 1.08999 * 109.46743 * 54.35863 * 3 2 1 5 5 C 1.50695 * 109.47418 * 174.36134 * 3 2 1 6 6 H 1.07995 * 120.00110 * 120.00039 * 5 3 2 7 7 C 1.37883 * 119.99700 * 300.00220 * 5 3 2 8 8 N 1.31514 * 120.00046 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99674 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47651 * 89.99773 * 9 7 5 11 11 H 1.48500 * 109.46865 * 209.99788 * 9 7 5 12 12 H 1.48506 * 109.47096 * 329.99455 * 9 7 5 13 13 N 1.46896 * 109.46751 * 294.36592 * 3 2 1 14 14 C 1.46905 * 111.00082 * 152.94680 * 13 3 2 15 15 C 1.50695 * 109.47146 * 174.67380 * 14 13 3 16 16 O 1.21248 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.47173 * 119.99683 * 179.97438 * 15 14 13 18 18 C 1.39850 * 120.17132 * 359.72387 * 17 15 14 19 19 C 1.37891 * 119.82265 * 179.76067 * 18 17 15 20 20 C 1.38405 * 120.17150 * 0.53785 * 19 18 17 21 21 C 1.50694 * 119.82355 * 179.71510 * 20 19 18 22 22 F 1.39899 * 109.47420 * 269.97552 * 21 20 19 23 23 F 1.39894 * 109.47311 * 29.97784 * 21 20 19 24 24 F 1.39899 * 109.47151 * 149.97898 * 21 20 19 25 25 C 1.38401 * 120.34740 * 359.69215 * 20 19 18 26 26 C 1.37888 * 120.17412 * 0.04708 * 25 20 19 27 27 H 1.08999 * 109.47388 * 179.31288 * 1 2 3 28 28 H 1.08996 * 109.47139 * 299.31696 * 1 2 3 29 29 H 1.09008 * 109.47127 * 59.31396 * 1 2 3 30 30 H 1.09001 * 109.47445 * 240.00143 * 2 1 3 31 31 H 1.09003 * 109.47157 * 120.00080 * 2 1 3 32 32 H 0.97003 * 119.99473 * 180.02562 * 8 7 5 33 33 H 1.00895 * 111.00807 * 28.98454 * 13 3 2 34 34 H 1.09004 * 109.46602 * 294.67147 * 14 13 3 35 35 H 1.09001 * 109.47152 * 54.66338 * 14 13 3 36 36 H 1.08002 * 120.08661 * 0.02562 * 18 17 15 37 37 H 1.07999 * 119.91065 * 180.24791 * 19 18 17 38 38 H 1.08006 * 119.91249 * 180.02562 * 25 20 19 39 39 H 1.08003 * 120.08882 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9847 0.8352 5 6 3.5406 1.4448 0.1396 6 1 4.1540 1.8864 -0.6317 7 6 4.1302 0.8829 1.2521 8 7 3.3832 0.3455 2.1916 9 14 5.9901 0.8863 1.4255 10 1 6.4196 2.1218 2.1286 11 1 6.4165 -0.3018 2.2076 12 1 6.6130 0.8416 0.0781 13 7 1.6646 2.0946 -1.2616 14 6 1.5366 3.5474 -1.0856 15 6 1.2803 4.1947 -2.4222 16 8 1.2116 3.5131 -3.4226 17 6 1.1135 5.6541 -2.5130 18 6 1.1864 6.4430 -1.3606 19 6 1.0339 7.8102 -1.4547 20 6 0.7982 8.4009 -2.6840 21 6 0.6265 9.8951 -2.7769 22 9 -0.7257 10.2195 -2.6235 23 9 1.3719 10.5138 -1.7677 24 9 1.0737 10.3392 -4.0259 25 6 0.7200 7.6264 -3.8284 26 6 0.8756 6.2585 -3.7515 27 1 -0.3634 -1.0276 -0.0123 28 1 -0.3633 0.5032 0.8960 29 1 -0.3634 0.5245 -0.8838 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7981 -0.0494 2.9745 33 1 0.8144 1.6992 -1.6341 34 1 0.7052 3.7601 -0.4136 35 1 2.4583 3.9445 -0.6602 36 1 1.3658 5.9830 -0.4001 37 1 1.0939 8.4212 -0.5662 38 1 0.5363 8.0948 -4.7841 39 1 0.8139 5.6555 -4.6454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:40 Heat of formation + Delta-G solvation = -178.923454 kcal Electronic energy + Delta-G solvation = -25448.677154 eV Core-core repulsion = 21133.620374 eV Total energy + Delta-G solvation = -4315.056780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.21993 -48.73074 -48.68374 -41.21317 -39.50469 -37.86426 -34.46883 -33.59435 -32.80991 -32.22207 -29.33193 -28.09510 -26.48042 -24.55458 -23.97012 -23.35686 -21.51796 -20.83727 -19.60728 -19.52854 -19.39709 -18.40905 -17.79881 -17.08957 -16.67819 -16.41719 -15.99905 -15.78474 -15.55091 -15.48747 -15.37168 -15.13383 -15.02131 -14.93268 -14.83246 -14.54527 -14.49235 -14.36732 -13.90414 -13.76347 -13.56960 -13.11405 -12.91039 -12.76982 -12.73876 -12.53922 -12.30943 -11.97597 -11.76517 -11.50822 -11.05648 -10.68038 -10.41445 -10.39006 -10.20691 -9.02719 -8.05713 -6.17431 -0.75060 0.16661 1.18724 1.42558 1.45400 1.55147 1.56143 2.45133 2.46469 2.59635 2.81064 2.94564 3.20252 3.35250 3.67100 3.73781 3.76625 4.08878 4.12647 4.28557 4.43786 4.49801 4.52889 4.56769 4.62490 4.73549 4.83162 4.97118 5.00553 5.10111 5.17086 5.23389 5.35733 5.55024 5.57336 5.75377 5.88144 6.33065 6.39698 6.56433 6.91462 6.95404 7.51709 8.97193 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.017754 B = 0.002806 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.747473 B = 9975.159152 C =10739.211833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.227 3.773 4 H -0.015 1.015 5 C -0.514 4.514 6 H 0.047 0.953 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.687 5.687 14 C 0.021 3.979 15 C 0.399 3.601 16 O -0.464 6.464 17 C -0.142 4.142 18 C -0.071 4.071 19 C -0.080 4.080 20 C -0.164 4.164 21 C 0.513 3.487 22 F -0.177 7.177 23 F -0.176 7.176 24 F -0.177 7.177 25 C -0.079 4.079 26 C -0.071 4.071 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.261 0.739 33 H 0.330 0.670 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.157 18.581 -7.820 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.119 3.881 4 H 0.003 0.997 5 C -0.553 4.553 6 H 0.066 0.934 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.320 5.320 14 C -0.109 4.109 15 C 0.277 3.723 16 O -0.339 6.339 17 C -0.143 4.143 18 C -0.089 4.089 19 C -0.098 4.098 20 C -0.165 4.165 21 C 0.459 3.541 22 F -0.159 7.159 23 F -0.157 7.157 24 F -0.158 7.158 25 C -0.097 4.097 26 C -0.089 4.089 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.149 0.851 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.177 0.823 37 H 0.181 0.819 38 H 0.179 0.821 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.535 18.199 -8.406 21.416 hybrid contribution 0.239 0.032 0.799 0.835 sum -7.296 18.231 -7.606 21.058 Atomic orbital electron populations 1.21755 0.96242 1.01273 1.00451 1.21630 0.94281 0.99186 1.01165 1.18955 0.94116 0.90686 0.84320 0.99724 1.21453 0.92794 1.36971 1.04052 0.93421 1.25610 1.01973 0.95220 0.95611 1.69981 1.36136 1.39731 1.09801 0.85648 0.81079 0.77628 0.77790 1.19915 1.21033 1.20122 1.60335 1.38936 1.01899 1.30839 1.22244 1.03131 0.90694 0.94852 1.22847 0.70933 0.88112 0.90411 1.90487 1.37545 1.66511 1.39386 1.20806 1.03379 0.94495 0.95650 1.21710 0.95222 0.93094 0.98825 1.21181 0.96252 0.95159 0.97169 1.20350 1.07911 0.91126 0.97131 1.18220 0.73934 0.88277 0.73661 1.93236 1.33358 1.93952 1.95327 1.93205 1.76796 1.84919 1.60822 1.93200 1.89177 1.91014 1.42413 1.21095 0.96969 0.93097 0.98568 1.21503 0.95220 0.94571 0.97582 0.92448 0.93809 0.92916 0.95013 0.91018 0.92997 0.85071 0.90656 0.87686 0.82262 0.81912 0.82116 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 9.77 71.98 0.70 -4.41 16 2 C -0.12 -5.75 5.35 30.60 0.16 -5.59 16 3 C 0.23 10.93 2.02 44.17 0.09 11.02 16 4 H -0.01 -0.76 7.83 -2.39 -0.02 -0.78 16 5 C -0.51 -27.81 8.64 25.60 0.22 -27.59 16 6 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -50.94 11.29 21.45 0.24 -50.69 16 9 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 N -0.69 -28.60 5.83 -499.46 -2.91 -31.52 16 14 C 0.02 0.68 4.54 85.55 0.39 1.07 16 15 C 0.40 12.08 7.17 28.03 0.20 12.28 16 16 O -0.46 -16.85 16.31 -2.93 -0.05 -16.90 16 17 C -0.14 -3.28 5.87 -20.15 -0.12 -3.40 16 18 C -0.07 -1.31 9.47 22.58 0.21 -1.10 16 19 C -0.08 -1.28 9.38 22.23 0.21 -1.07 16 20 C -0.16 -2.73 5.46 -19.79 -0.11 -2.84 16 21 C 0.51 8.37 3.36 71.23 0.24 8.61 16 22 F -0.18 -3.07 17.30 44.97 0.78 -2.29 16 23 F -0.18 -2.98 16.45 44.97 0.74 -2.24 16 24 F -0.18 -2.96 16.45 44.97 0.74 -2.22 16 25 C -0.08 -1.31 9.38 22.23 0.21 -1.10 16 26 C -0.07 -1.43 9.60 22.58 0.22 -1.21 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.74 6.45 -2.38 -0.02 1.72 16 30 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 3.77 5.94 -2.39 -0.01 3.75 16 32 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 33 H 0.33 12.92 6.39 -89.70 -0.57 12.34 16 34 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 35 H 0.11 3.62 7.95 -2.39 -0.02 3.60 16 36 H 0.16 2.57 7.05 -2.91 -0.02 2.55 16 37 H 0.16 1.89 7.59 -2.91 -0.02 1.87 16 38 H 0.16 1.91 7.59 -2.91 -0.02 1.89 16 39 H 0.15 2.90 7.65 -2.91 -0.02 2.88 16 Total: -1.00 -62.40 342.84 5.16 -57.24 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.52 Total: 17.56 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 3.07 Total: -14.10 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.67 Total: -82.21 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.05 Total: -16.90 kcal Atomic # 9 Polarization: -9.01 SS G_CDS: 2.26 Total: -6.76 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -62.40 5.16 -57.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.683 kcal (2) G-P(sol) polarization free energy of solvation -62.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds