Wall clock time and date at job start Tue Mar 31 2020 11:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47365 * 2 1 4 4 C 1.53002 * 109.46769 * 119.99601 * 2 1 3 5 5 C 1.50704 * 109.47039 * 185.00059 * 4 2 1 6 6 C 1.38235 * 120.00754 * 264.72063 * 5 4 2 7 7 C 1.38218 * 120.00867 * 179.76703 * 6 5 4 8 8 C 1.38267 * 120.03186 * 0.51165 * 7 6 5 9 9 C 1.38196 * 120.00727 * 359.74736 * 8 7 6 10 10 C 1.38332 * 120.00604 * 85.00196 * 5 4 2 11 11 Cl 1.73608 * 120.01262 * 359.95401 * 10 5 4 12 12 N 1.46496 * 109.47549 * 239.99349 * 2 1 3 13 13 C 1.38858 * 119.99652 * 85.00251 * 12 2 1 14 14 C 1.39566 * 119.84261 * 359.72536 * 13 12 2 15 15 C 1.36347 * 120.16028 * 179.71844 * 14 13 12 16 16 C 1.40882 * 119.83387 * 0.55496 * 15 14 13 17 17 C 1.41138 * 120.15464 * 179.69492 * 16 15 14 18 18 H 1.07992 * 119.99968 * 155.11070 * 17 16 15 19 19 C 1.39863 * 119.99887 * 335.11580 * 17 16 15 20 20 N 1.30905 * 120.00165 * 342.12508 * 19 17 16 21 21 Si 1.86806 * 119.99942 * 162.12555 * 19 17 16 22 22 H 1.48495 * 109.46908 * 94.65113 * 21 19 17 23 23 H 1.48495 * 109.46905 * 214.65056 * 21 19 17 24 24 H 1.48495 * 109.47122 * 334.65267 * 21 19 17 25 25 C 1.40885 * 119.69175 * 359.72278 * 16 15 14 26 26 C 1.36342 * 119.83454 * 359.97438 * 25 16 15 27 27 H 1.09007 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47545 * 300.00049 * 1 2 3 29 29 H 1.08994 * 109.47057 * 60.00714 * 1 2 3 30 30 H 1.09001 * 109.47293 * 65.00452 * 4 2 1 31 31 H 1.09001 * 109.47565 * 305.00136 * 4 2 1 32 32 H 1.07999 * 119.99300 * 0.02562 * 6 5 4 33 33 H 1.08009 * 119.98730 * 180.23908 * 7 6 5 34 34 H 1.07994 * 119.99437 * 179.76339 * 8 7 6 35 35 H 1.07993 * 119.99909 * 180.02562 * 9 8 7 36 36 H 0.96994 * 120.00257 * 265.00041 * 12 2 1 37 37 H 1.08001 * 119.91805 * 359.97438 * 14 13 12 38 38 H 1.08001 * 120.07885 * 180.27625 * 15 14 13 39 39 H 0.97003 * 119.99789 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.08393 * 180.02562 * 25 16 15 41 41 H 1.08007 * 119.91484 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3129 6 6 4.3289 -1.6350 0.8121 7 6 5.7064 -1.5353 0.8660 8 6 6.2980 -0.4202 1.4303 9 6 5.5121 0.5978 1.9360 10 6 4.1331 0.5010 1.8776 11 17 3.1452 1.7798 2.5122 12 7 2.0184 -0.6907 -1.1960 13 6 2.1511 0.0020 -2.3922 14 6 1.8127 1.3546 -2.4526 15 6 1.9459 2.0425 -3.6223 16 6 2.4153 1.3815 -4.7745 17 6 2.5497 2.0854 -5.9905 18 1 3.2507 1.7438 -6.7375 19 6 1.7749 3.2254 -6.2279 20 7 0.7006 3.4471 -5.5135 21 14 2.2733 4.4317 -7.5643 22 1 1.5522 4.1043 -8.8205 23 1 1.9265 5.8117 -7.1398 24 1 3.7372 4.3378 -7.7950 25 6 2.7494 0.0145 -4.7075 26 6 2.6171 -0.6592 -3.5295 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.7516 -1.7715 1.2057 31 1 1.6052 -0.2617 2.1371 32 1 3.8674 -2.5081 0.3750 33 1 6.3211 -2.3309 0.4712 34 1 7.3744 -0.3447 1.4755 35 1 5.9743 1.4688 2.3763 36 1 2.2491 -1.6318 -1.1524 37 1 1.4484 1.8588 -1.5697 38 1 1.6879 3.0903 -3.6665 39 1 0.1635 4.2379 -5.6780 40 1 3.1102 -0.4984 -5.5868 41 1 2.8724 -1.7073 -3.4768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325601965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:40 Heat of formation + Delta-G solvation = 17.193435 kcal Electronic energy + Delta-G solvation = -23183.805406 eV Core-core repulsion = 19859.818798 eV Total energy + Delta-G solvation = -3323.986608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.61728 -39.68334 -37.53834 -37.35572 -35.35525 -33.44598 -31.82643 -31.51044 -31.24614 -29.71484 -27.45544 -26.13847 -23.68058 -23.42629 -22.85575 -22.14366 -20.92327 -19.12945 -18.06766 -17.83928 -16.99279 -16.68071 -16.34504 -16.14588 -15.62389 -15.07627 -14.92570 -14.72825 -14.51712 -14.29433 -14.06694 -13.79472 -13.63294 -13.41275 -13.10239 -13.02208 -12.84061 -12.72299 -12.57102 -12.46554 -12.29777 -12.22532 -12.13052 -11.79727 -11.58089 -11.52776 -11.11694 -11.03570 -10.26096 -9.78235 -9.53780 -9.35979 -8.52890 -8.10179 -5.97392 0.25643 0.37778 1.13917 1.22041 1.22331 1.39465 1.52369 1.60589 2.27926 2.72274 2.87141 2.93701 3.71899 3.85436 3.89387 4.03017 4.15716 4.31519 4.41141 4.45085 4.51223 4.54173 4.56334 4.73028 4.76676 4.87436 4.91933 5.04135 5.07424 5.15597 5.21060 5.31228 5.32003 5.41976 5.48820 5.49368 5.54570 5.73543 5.85680 5.94023 6.00806 6.22117 6.42969 6.70896 6.92008 7.11302 7.20370 7.40012 8.50467 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.003449 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.661799 B = 8116.454677 C = 8190.919517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.165 3.835 3 H 0.053 0.947 4 C -0.083 4.083 5 C -0.075 4.075 6 C -0.106 4.106 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.124 4.124 10 C -0.053 4.053 11 Cl -0.078 7.078 12 N -0.738 5.738 13 C 0.126 3.874 14 C -0.174 4.174 15 C -0.143 4.143 16 C 0.033 3.967 17 C -0.507 4.507 18 H 0.066 0.934 19 C 0.032 3.968 20 N -0.844 5.844 21 Si 0.973 3.027 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.261 1.261 25 C -0.194 4.194 26 C -0.166 4.166 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.395 0.605 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.280 0.720 40 H 0.095 0.905 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.989 -8.598 17.025 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.059 3.941 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.076 4.076 6 C -0.124 4.124 7 C -0.136 4.136 8 C -0.137 4.137 9 C -0.142 4.142 10 C -0.079 4.079 11 Cl -0.049 7.049 12 N -0.372 5.372 13 C 0.026 3.974 14 C -0.196 4.196 15 C -0.163 4.163 16 C 0.031 3.969 17 C -0.539 4.539 18 H 0.085 0.915 19 C -0.179 4.179 20 N -0.472 5.472 21 Si 0.795 3.205 22 H -0.190 1.190 23 H -0.194 1.194 24 H -0.185 1.185 25 C -0.214 4.214 26 C -0.188 4.188 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.157 0.843 36 H 0.230 0.770 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.635 -8.185 17.233 19.893 hybrid contribution -0.077 0.780 -0.791 1.114 sum 5.558 -7.405 16.442 18.870 Atomic orbital electron populations 1.22243 0.95991 1.02513 1.01420 1.20600 0.93170 0.96035 0.84291 0.92933 1.20928 0.90164 1.03057 0.97879 1.19825 0.96794 0.93219 0.97720 1.21260 0.93974 0.98659 0.98555 1.21583 0.95064 0.98763 0.98157 1.21417 1.01139 0.93240 0.97892 1.21272 0.91373 1.00618 1.00969 1.21050 0.92241 0.91256 1.03366 1.98351 1.70646 1.50502 1.85431 1.43906 1.75967 1.11369 1.05972 1.17362 1.01735 0.91239 0.87066 1.20206 1.08144 0.93993 0.97304 1.20825 1.04196 0.98981 0.92309 1.17778 0.93882 0.91895 0.93382 1.19576 1.21379 1.10501 1.02430 0.91547 1.26578 0.92976 0.99211 0.99151 1.69932 1.11824 1.26306 1.39153 0.85338 0.79649 0.77387 0.78154 1.18957 1.19415 1.18523 1.20746 1.09388 0.94031 0.97273 1.20074 1.07468 0.98975 0.92312 0.91375 0.90857 0.94756 0.88286 0.88775 0.83734 0.83294 0.83073 0.84298 0.76964 0.88455 0.88861 0.90928 0.88680 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 9.40 71.98 0.68 -3.61 16 2 C 0.17 4.54 2.25 44.99 0.10 4.64 16 3 H 0.05 1.73 6.26 -2.39 -0.01 1.72 16 4 C -0.08 -1.71 4.40 29.85 0.13 -1.58 16 5 C -0.07 -1.69 4.89 -19.84 -0.10 -1.79 16 6 C -0.11 -2.11 9.38 22.26 0.21 -1.90 16 7 C -0.12 -2.15 10.05 22.27 0.22 -1.92 16 8 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 9 C -0.12 -2.68 9.83 22.29 0.22 -2.46 16 10 C -0.05 -1.27 6.31 22.32 0.14 -1.13 16 11 Cl -0.08 -1.89 27.21 -2.72 -0.07 -1.96 16 12 N -0.74 -22.93 4.82 -318.55 -1.54 -24.47 16 13 C 0.13 5.27 6.65 38.67 0.26 5.52 16 14 C -0.17 -8.35 8.73 22.15 0.19 -8.16 16 15 C -0.14 -7.92 8.63 22.48 0.19 -7.73 16 16 C 0.03 1.90 5.57 -21.27 -0.12 1.78 16 17 C -0.51 -29.14 9.03 23.38 0.21 -28.93 16 18 H 0.07 3.70 7.91 -2.91 -0.02 3.68 16 19 C 0.03 1.74 5.13 85.22 0.44 2.18 16 20 N -0.84 -47.27 10.98 21.82 0.24 -47.03 16 21 Si 0.97 41.06 29.60 68.60 2.03 43.09 16 22 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 25 C -0.19 -9.80 9.74 22.48 0.22 -9.58 16 26 C -0.17 -7.20 9.82 22.15 0.22 -6.98 16 27 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.03 1.12 7.63 -2.39 -0.02 1.10 16 30 H 0.10 1.62 8.05 -2.39 -0.02 1.60 16 31 H 0.09 1.82 7.13 -2.39 -0.02 1.80 16 32 H 0.14 2.25 8.03 -2.91 -0.02 2.23 16 33 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 34 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.40 10.27 8.40 -92.71 -0.78 9.50 16 37 H 0.10 4.38 6.02 -2.91 -0.02 4.37 16 38 H 0.09 5.50 6.18 -2.91 -0.02 5.48 16 39 H 0.28 14.33 8.30 -92.71 -0.77 13.57 16 40 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -65.20 354.24 4.37 -60.83 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.27 Total: 33.16 kcal Atomic # 6 Polarization: -67.07 SS G_CDS: 3.44 Total: -63.63 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -1.30 Total: -71.50 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.07 Total: -1.96 kcal Total: -65.20 4.37 -60.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325601965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.028 kcal (2) G-P(sol) polarization free energy of solvation -65.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds