Wall clock time and date at job start Tue Mar 31 2020 11:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99762 * 2 1 4 4 H 1.48495 * 109.46994 * 269.99554 * 3 2 1 5 5 H 1.48496 * 109.46900 * 29.99491 * 3 2 1 6 6 H 1.48494 * 109.47129 * 149.99244 * 3 2 1 7 7 C 1.37874 * 120.00543 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99773 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00248 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46864 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.46753 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54355 * 68.37432 * 11 10 9 13 13 O 1.42094 * 110.54110 * 291.62268 * 11 10 9 14 14 N 1.65604 * 104.44853 * 179.97438 * 11 10 9 15 15 C 1.34782 * 119.99690 * 64.99745 * 14 11 10 16 16 O 1.21282 * 120.00200 * 0.02562 * 15 14 11 17 17 C 1.50695 * 119.99878 * 179.97438 * 15 14 11 18 18 C 1.52996 * 109.47114 * 186.39273 * 17 15 14 19 19 C 1.53005 * 109.47105 * 186.11360 * 18 17 15 20 20 C 1.53008 * 117.49692 * 124.89953 * 19 18 17 21 21 C 1.52997 * 117.49910 * 56.23962 * 19 18 17 22 22 C 1.53002 * 109.47228 * 66.11523 * 18 17 15 23 23 C 1.53004 * 117.49977 * 248.74669 * 22 18 17 24 24 C 1.53002 * 117.49633 * 180.08738 * 22 18 17 25 25 H 0.97000 * 120.00366 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47192 * 59.99566 * 9 7 2 27 27 H 1.08999 * 109.46705 * 299.99965 * 9 7 2 28 28 H 1.08994 * 109.47735 * 59.99696 * 10 9 7 29 29 H 1.08999 * 109.47266 * 299.99420 * 10 9 7 30 30 H 0.96995 * 120.00158 * 244.99846 * 14 11 10 31 31 H 1.08997 * 109.47320 * 66.39307 * 17 15 14 32 32 H 1.09006 * 109.47475 * 306.39290 * 17 15 14 33 33 H 1.08997 * 109.47295 * 306.11252 * 18 17 15 34 34 H 1.08999 * 115.54842 * 270.56365 * 19 18 17 35 35 H 1.09000 * 117.49516 * 359.97438 * 20 19 18 36 36 H 1.08993 * 117.49814 * 145.02002 * 20 19 18 37 37 H 1.09002 * 117.49977 * 214.98196 * 21 19 18 38 38 H 1.09007 * 117.49724 * 359.97438 * 21 19 18 39 39 H 1.09000 * 115.55090 * 34.42000 * 22 18 17 40 40 H 1.09000 * 117.49460 * 359.97438 * 23 22 18 41 41 H 1.08992 * 117.49612 * 145.02064 * 23 22 18 42 42 H 1.09009 * 117.49712 * 214.97464 * 24 22 18 43 43 H 1.09001 * 117.50480 * 359.97438 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 16 5.8357 -2.6363 0.0009 12 8 6.3343 -2.1459 1.2379 13 8 6.3342 -2.1458 -1.2360 14 7 6.2490 -4.2399 0.0015 15 6 5.9394 -5.0159 -1.0561 16 8 5.3585 -4.5397 -2.0083 17 6 6.3160 -6.4751 -1.0558 18 6 5.9973 -7.0842 -2.4226 19 6 6.2359 -8.5948 -2.3759 20 6 5.0760 -9.5062 -2.7824 21 6 5.4843 -9.3962 -1.3112 22 6 6.9035 -6.4574 -3.4842 23 6 6.2485 -5.5433 -4.5217 24 6 6.7364 -6.9363 -4.9277 25 1 -0.4851 0.8400 -0.0004 26 1 3.8746 -0.6798 0.8910 27 1 3.8752 -0.6802 -0.8889 28 1 3.6587 -3.1501 -0.8891 29 1 3.6581 -3.1504 0.8908 30 1 6.7139 -4.6207 0.7629 31 1 5.7491 -6.9965 -0.2846 32 1 7.3824 -6.5751 -0.8532 33 1 4.9548 -6.8887 -2.6734 34 1 7.2446 -8.9196 -2.6315 35 1 4.1429 -9.0295 -3.0827 36 1 5.3216 -10.4306 -3.3050 37 1 5.9983 -10.2483 -0.8664 38 1 4.8200 -8.8471 -0.6437 39 1 7.9097 -6.2019 -3.1520 40 1 5.1721 -5.3889 -4.4482 41 1 6.8240 -4.6866 -4.8723 42 1 7.6327 -6.9953 -5.5454 43 1 5.9812 -7.6982 -5.1211 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337261359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:46 Heat of formation + Delta-G solvation = -73.989222 kcal Electronic energy + Delta-G solvation = -24739.382484 eV Core-core repulsion = 21106.176686 eV Total energy + Delta-G solvation = -3633.205798 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45652 -38.55576 -36.81225 -36.29349 -35.73514 -34.44614 -33.95083 -32.00110 -31.49456 -26.26589 -25.93426 -22.79153 -22.43291 -21.72031 -21.45459 -21.24520 -19.87219 -19.35543 -17.97112 -17.60267 -16.89842 -16.26578 -15.88621 -15.57339 -15.28103 -15.06015 -14.65888 -14.36275 -14.18720 -13.90658 -13.65522 -12.85988 -12.74167 -12.67838 -12.29416 -11.93466 -11.85665 -11.83032 -11.73526 -11.72038 -11.44817 -11.34744 -11.28003 -11.23592 -10.87513 -10.58869 -10.49301 -10.42965 -10.23100 -10.11932 -10.03221 -9.80999 -9.63431 -9.35053 -8.65779 -6.16017 -4.17407 0.39904 2.11056 2.64374 3.27530 3.34414 3.38068 3.47710 3.76387 3.91383 4.16807 4.29427 4.36258 4.50166 4.56261 4.64883 4.74537 4.83980 4.92975 5.02814 5.07322 5.11899 5.15477 5.25826 5.34892 5.44853 5.45756 5.49734 5.55447 5.63893 5.66792 5.74033 5.84677 6.00271 6.08954 6.20557 6.25956 6.30404 6.60471 6.79980 6.92898 7.49379 7.54325 8.36707 8.84871 9.43220 10.96321 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.003445 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.560315 B = 8124.611075 C = 8425.254999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.518 4.518 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.569 4.569 11 S 2.564 3.436 12 O -0.957 6.957 13 O -0.938 6.938 14 N -1.060 6.060 15 C 0.529 3.471 16 O -0.479 6.479 17 C -0.135 4.135 18 C -0.016 4.016 19 C -0.142 4.142 20 C -0.178 4.178 21 C -0.185 4.185 22 C -0.149 4.149 23 C -0.154 4.154 24 C -0.183 4.183 25 H 0.267 0.733 26 H 0.033 0.967 27 H 0.030 0.970 28 H 0.137 0.863 29 H 0.126 0.874 30 H 0.428 0.572 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.990 -19.817 -2.777 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.557 4.557 8 H 0.096 0.904 9 C -0.045 4.045 10 C -0.703 4.703 11 S 2.664 3.336 12 O -0.948 6.948 13 O -0.928 6.928 14 N -0.822 5.822 15 C 0.316 3.684 16 O -0.349 6.349 17 C -0.176 4.176 18 C -0.035 4.035 19 C -0.160 4.160 20 C -0.215 4.215 21 C -0.221 4.221 22 C -0.167 4.167 23 C -0.191 4.191 24 C -0.220 4.220 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.155 0.845 29 H 0.145 0.855 30 H 0.263 0.737 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.066 -18.658 -3.513 24.238 hybrid contribution 0.110 0.303 0.538 0.627 sum 15.176 -18.355 -2.975 24.001 Atomic orbital electron populations 1.69877 1.06192 1.27265 1.49950 1.24971 0.94823 0.99133 0.94108 0.86925 0.80653 0.83687 0.79190 1.19602 1.20728 1.18649 1.20810 0.87617 0.94977 1.52334 0.90365 1.19424 1.00034 0.87074 0.97947 1.30175 1.18816 1.09824 1.11524 1.06656 0.80064 0.72390 0.74485 1.93592 1.79507 1.76534 1.45133 1.93601 1.78376 1.76355 1.44464 1.55371 1.67048 1.32660 1.27141 1.20712 0.77217 0.89806 0.80712 1.90907 1.37385 1.74662 1.31938 1.21872 1.04372 0.91052 1.00350 1.20181 1.00348 0.91114 0.91885 1.22271 0.97284 0.92292 1.04152 1.23033 0.99184 1.01483 0.97757 1.23015 1.04122 1.02806 0.92203 1.22152 0.99727 1.04567 0.90229 1.22934 1.01707 0.92871 1.01593 1.22945 1.03154 0.98802 0.97085 0.92354 0.94913 0.95153 0.84516 0.85536 0.73694 0.87603 0.88066 0.89515 0.87563 0.88674 0.88945 0.88839 0.88630 0.88387 0.88146 0.89165 0.89420 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.96 55.43 0.77 -26.44 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.65 9.66 -34.44 -0.33 -14.99 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 10 C -0.57 -10.78 5.82 37.16 0.22 -10.57 16 11 S 2.56 43.84 5.11 -107.50 -0.55 43.29 16 12 O -0.96 -17.91 18.08 -57.54 -1.04 -18.95 16 13 O -0.94 -19.29 17.04 -64.79 -1.10 -20.40 16 14 N -1.06 -12.31 5.60 31.22 0.17 -12.13 16 15 C 0.53 6.37 7.25 -10.99 -0.08 6.29 16 16 O -0.48 -7.55 11.92 -11.56 -0.14 -7.69 16 17 C -0.13 -1.06 5.04 -27.89 -0.14 -1.20 16 18 C -0.02 -0.14 1.84 -90.62 -0.17 -0.31 16 19 C -0.14 -0.99 4.87 -90.61 -0.44 -1.43 16 20 C -0.18 -1.23 10.18 -26.69 -0.27 -1.50 16 21 C -0.18 -1.16 9.64 -26.69 -0.26 -1.41 16 22 C -0.15 -1.47 4.36 -90.62 -0.39 -1.87 16 23 C -0.15 -1.83 8.80 -26.69 -0.23 -2.06 16 24 C -0.18 -1.70 9.88 -26.69 -0.26 -1.96 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 27 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16 28 H 0.14 2.57 7.19 -51.93 -0.37 2.20 16 29 H 0.13 2.09 8.14 -51.92 -0.42 1.66 16 30 H 0.43 3.18 8.79 -34.47 -0.30 2.88 16 31 H 0.11 0.60 6.85 -51.93 -0.36 0.24 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.90 7.32 -51.93 -0.38 0.52 16 34 H 0.11 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.59 7.34 -51.92 -0.38 0.21 16 39 H 0.10 0.94 8.11 -51.93 -0.42 0.51 16 40 H 0.10 1.32 7.84 -51.93 -0.41 0.92 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -35.88 364.41 -10.41 -46.29 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.77 Total: 2.79 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: -2.58 Total: -29.23 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.95 Total: -38.58 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -2.28 Total: -47.03 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 43.84 SS G_CDS: -0.55 Total: 43.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.88 -10.41 -46.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337261359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.700 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds