Wall clock time and date at job start Tue Mar 31 2020 11:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.46988 * 2 1 4 4 C 1.46897 * 111.00000 * 72.00990 * 3 2 1 5 5 C 1.50700 * 109.47140 * 199.84071 * 4 3 2 6 6 C 1.38634 * 119.74920 * 265.53663 * 5 4 3 7 7 C 1.37618 * 120.24876 * 179.72190 * 6 5 4 8 8 C 1.40718 * 119.74290 * 0.56788 * 7 6 5 9 9 C 1.41395 * 120.24265 * 179.68436 * 8 7 6 10 10 H 1.08005 * 120.00113 * 28.91819 * 9 8 7 11 11 C 1.39951 * 119.99828 * 208.92015 * 9 8 7 12 12 N 1.30818 * 119.99958 * 10.73074 * 11 9 8 13 13 Si 1.86800 * 120.00014 * 190.72508 * 11 9 8 14 14 H 1.48508 * 109.46978 * 90.00208 * 13 11 9 15 15 H 1.48496 * 109.47309 * 210.00175 * 13 11 9 16 16 H 1.48500 * 109.47046 * 330.00688 * 13 11 9 17 17 C 1.40710 * 119.51097 * 359.70328 * 8 7 6 18 18 C 1.37620 * 119.74833 * 0.02562 * 17 8 7 19 19 C 1.39758 * 111.00116 * 195.96384 * 3 2 1 20 20 C 1.38876 * 120.07641 * 296.04430 * 19 3 2 21 21 C 1.38114 * 119.93885 * 179.97438 * 20 19 3 22 22 C 1.38290 * 120.09521 * 0.02562 * 21 20 19 23 23 C 1.38274 * 120.15483 * 359.97268 * 22 21 20 24 24 C 1.38211 * 120.06047 * 0.02732 * 23 22 21 25 25 Cl 1.73607 * 120.04760 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.47475 * 300.70611 * 1 2 3 27 27 H 1.09002 * 109.47595 * 60.71259 * 1 2 3 28 28 H 1.09004 * 109.46563 * 180.71070 * 1 2 3 29 29 H 1.09007 * 109.47200 * 240.00079 * 2 1 3 30 30 H 1.09004 * 109.47798 * 119.99979 * 2 1 3 31 31 H 1.09004 * 109.46878 * 319.83371 * 4 3 2 32 32 H 1.09002 * 109.47409 * 79.83982 * 4 3 2 33 33 H 1.07996 * 119.87638 * 359.97246 * 6 5 4 34 34 H 1.07996 * 120.12977 * 180.27403 * 7 6 5 35 35 H 0.96997 * 119.99813 * 179.97438 * 12 11 9 36 36 H 1.08005 * 120.12750 * 179.97438 * 17 8 7 37 37 H 1.07999 * 119.87813 * 179.97438 * 18 17 8 38 38 H 1.08008 * 120.03502 * 359.97438 * 20 19 3 39 39 H 1.08007 * 119.95482 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.92563 * 180.02562 * 22 21 20 41 41 H 1.07997 * 119.97102 * 179.75185 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7957 2.0225 1.3044 5 6 1.8420 3.5204 1.1459 6 6 3.0285 4.2000 1.3751 7 6 3.0838 5.5672 1.2279 8 6 1.9272 6.2766 0.8548 9 6 1.9706 7.6821 0.7071 10 1 2.8910 8.1665 0.4161 11 6 0.8206 8.4457 0.9378 12 7 -0.2303 7.8953 1.4890 13 14 0.7866 10.2510 0.4590 14 1 0.2938 10.3840 -0.9356 15 1 -0.1181 10.9895 1.3762 16 1 2.1571 10.8146 0.5555 17 6 0.7272 5.5770 0.6304 18 6 0.6964 4.2091 0.7780 19 6 3.3692 1.4391 -0.3588 20 6 4.3285 0.8420 0.4485 21 6 5.6614 0.8968 0.0909 22 6 6.0420 1.5457 -1.0695 23 6 5.0901 2.1415 -1.8763 24 6 3.7545 2.0906 -1.5246 25 17 2.5597 2.8393 -2.5374 26 1 -0.3634 0.5247 0.8835 27 1 -0.3634 0.5027 -0.8963 28 1 -0.3632 -1.0277 0.0127 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.8196 1.7280 1.6899 32 1 2.5721 1.7067 2.0012 33 1 3.9136 3.6541 1.6663 34 1 4.0102 6.0942 1.4026 35 1 -1.0272 8.4246 1.6493 36 1 -0.1665 6.1115 0.3441 37 1 -0.2236 3.6700 0.6066 38 1 4.0326 0.3353 1.3553 39 1 6.4077 0.4322 0.7184 40 1 7.0850 1.5865 -1.3467 41 1 5.3910 2.6509 -2.7798 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559785891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:33 Heat of formation + Delta-G solvation = 41.602398 kcal Electronic energy + Delta-G solvation = -23736.901907 eV Core-core repulsion = 20413.973751 eV Total energy + Delta-G solvation = -3322.928156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.88387 -37.62004 -36.48513 -35.85835 -33.61906 -31.35801 -30.60908 -30.54419 -29.15547 -28.25623 -26.30046 -23.69045 -22.92907 -22.15277 -20.85141 -20.75433 -19.60041 -17.28411 -17.17447 -15.91507 -15.62779 -15.18043 -15.05330 -14.55547 -14.15174 -13.88180 -13.71215 -13.53525 -13.29847 -12.89375 -12.48210 -12.17381 -11.94191 -11.85325 -11.65336 -11.61114 -11.44433 -11.36725 -11.08352 -11.04951 -10.91282 -10.79335 -10.38457 -10.29937 -10.20799 -9.55415 -9.24827 -9.12815 -8.75721 -8.35582 -8.12860 -7.32167 -7.15364 -6.62175 -4.27966 1.34059 1.35518 2.65366 2.81283 3.11789 3.15440 3.18847 3.22245 3.74281 4.00462 4.10357 4.76874 4.92728 4.99739 5.12553 5.23130 5.35422 5.46881 5.54720 5.62512 5.72885 5.80331 5.80921 5.85833 5.98653 6.09253 6.23650 6.28928 6.35064 6.39635 6.46922 6.49957 6.53688 6.81022 7.03958 7.17348 7.28813 7.38927 7.45622 7.62344 7.73196 7.96335 8.16141 8.23944 8.41098 8.75384 9.00117 9.07886 10.31978 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.004287 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.594684 B = 6530.090629 C = 7093.255669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 N -0.495 5.495 4 C 0.120 3.880 5 C -0.196 4.196 6 C -0.081 4.081 7 C -0.221 4.221 8 C 0.114 3.886 9 C -0.465 4.465 10 H 0.074 0.926 11 C 0.074 3.926 12 N -0.804 5.804 13 Si 0.908 3.092 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.264 1.264 17 C -0.158 4.158 18 C -0.077 4.077 19 C 0.121 3.879 20 C -0.143 4.143 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.112 4.112 24 C -0.003 4.003 25 Cl -0.047 7.047 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.278 0.722 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.780 -14.004 -3.646 15.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 N -0.216 5.216 4 C -0.004 4.004 5 C -0.197 4.197 6 C -0.099 4.099 7 C -0.241 4.241 8 C 0.112 3.888 9 C -0.495 4.495 10 H 0.092 0.908 11 C -0.142 4.142 12 N -0.431 5.431 13 Si 0.733 3.267 14 H -0.194 1.194 15 H -0.204 1.204 16 H -0.188 1.188 17 C -0.177 4.177 18 C -0.096 4.096 19 C 0.026 3.974 20 C -0.163 4.163 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.031 4.031 25 Cl -0.018 7.018 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.117 -13.627 -3.984 15.091 hybrid contribution 0.341 0.582 0.441 0.805 sum 5.458 -13.045 -3.543 14.578 Atomic orbital electron populations 1.21776 0.94562 1.00893 1.03123 1.22075 0.96366 0.88181 1.00236 1.59839 1.13173 1.16290 1.32342 1.20943 0.99795 0.93380 0.86303 1.18753 0.94736 0.91677 1.14565 1.20281 0.95088 0.94217 1.00359 1.20937 0.98641 0.93521 1.10958 1.17599 0.90964 0.93043 0.87241 1.19565 0.96465 0.91858 1.41645 0.90796 1.25847 0.94872 1.00757 0.92683 1.69796 1.03715 1.38017 1.31547 0.86324 0.79115 0.82103 0.79185 1.19434 1.20404 1.18780 1.21311 0.99389 0.92191 1.04847 1.20423 0.95586 0.94347 0.99200 1.18514 0.89607 0.96261 0.93029 1.21585 0.93584 1.01180 1.00000 1.21007 0.95636 0.99659 0.96966 1.21014 0.99116 0.98590 0.94957 1.21021 0.90907 1.00392 1.00801 1.20928 0.90263 0.98328 0.93552 1.98378 1.56893 1.80118 1.66407 0.92321 0.91645 0.92716 0.91351 0.95013 0.90960 0.95171 0.90392 0.89457 0.91163 0.86545 0.89753 0.85960 0.86039 0.85612 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.99 37.15 0.37 -1.35 16 2 C 0.06 0.74 5.26 -3.83 -0.02 0.72 16 3 N -0.49 -7.80 3.76 -172.43 -0.65 -8.45 16 4 C 0.12 2.07 4.87 -4.98 -0.02 2.04 16 5 C -0.20 -4.19 5.15 -104.33 -0.54 -4.73 16 6 C -0.08 -1.82 9.33 -39.66 -0.37 -2.19 16 7 C -0.22 -5.55 9.80 -38.87 -0.38 -5.93 16 8 C 0.11 3.09 5.55 -106.83 -0.59 2.50 16 9 C -0.46 -12.66 9.06 -37.74 -0.34 -13.00 16 10 H 0.07 1.95 7.87 -52.48 -0.41 1.54 16 11 C 0.07 1.92 5.25 -17.34 -0.09 1.82 16 12 N -0.80 -21.29 10.85 55.55 0.60 -20.69 16 13 Si 0.91 19.29 29.57 -169.99 -5.03 14.26 16 14 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 15 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 17 C -0.16 -4.16 8.66 -38.87 -0.34 -4.49 16 18 C -0.08 -1.79 9.69 -39.66 -0.38 -2.18 16 19 C 0.12 1.89 3.98 -83.73 -0.33 1.55 16 20 C -0.14 -1.93 8.52 -39.39 -0.34 -2.27 16 21 C -0.11 -1.35 10.04 -39.61 -0.40 -1.75 16 22 C -0.12 -1.41 10.04 -39.55 -0.40 -1.80 16 23 C -0.11 -1.54 9.82 -39.58 -0.39 -1.93 16 24 C 0.00 -0.05 6.34 -39.31 -0.25 -0.29 16 25 Cl -0.05 -0.82 28.44 -51.86 -1.47 -2.29 16 26 H 0.06 0.73 6.52 -51.93 -0.34 0.39 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.84 7.97 -51.92 -0.41 0.43 16 30 H 0.03 0.37 7.84 -51.93 -0.41 -0.04 16 31 H 0.07 1.18 6.20 -51.93 -0.32 0.86 16 32 H 0.03 0.50 6.61 -51.93 -0.34 0.15 16 33 H 0.08 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 36 H 0.12 3.21 6.23 -52.48 -0.33 2.88 16 37 H 0.08 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.12 1.49 7.29 -52.48 -0.38 1.11 16 39 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -28.30 354.75 -11.48 -39.78 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.46 Total: 5.33 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: -4.81 Total: -33.28 kcal Atomic # 7 Polarization: -29.09 SS G_CDS: -0.05 Total: -29.14 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.47 Total: -2.29 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.30 -11.48 -39.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559785891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.378 kcal (2) G-P(sol) polarization free energy of solvation -28.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds