Wall clock time and date at job start Tue Mar 31 2020 11:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.46988 * 2 1 4 4 C 1.46897 * 111.00000 * 72.00990 * 3 2 1 5 5 C 1.50700 * 109.47140 * 199.84071 * 4 3 2 6 6 C 1.38634 * 119.74920 * 265.53663 * 5 4 3 7 7 C 1.37618 * 120.24876 * 179.72190 * 6 5 4 8 8 C 1.40718 * 119.74290 * 0.56788 * 7 6 5 9 9 C 1.41395 * 120.24265 * 179.68436 * 8 7 6 10 10 H 1.08005 * 120.00113 * 28.91819 * 9 8 7 11 11 C 1.39951 * 119.99828 * 208.92015 * 9 8 7 12 12 N 1.30818 * 119.99958 * 10.73074 * 11 9 8 13 13 Si 1.86800 * 120.00014 * 190.72508 * 11 9 8 14 14 H 1.48508 * 109.46978 * 90.00208 * 13 11 9 15 15 H 1.48496 * 109.47309 * 210.00175 * 13 11 9 16 16 H 1.48500 * 109.47046 * 330.00688 * 13 11 9 17 17 C 1.40710 * 119.51097 * 359.70328 * 8 7 6 18 18 C 1.37620 * 119.74833 * 0.02562 * 17 8 7 19 19 C 1.39758 * 111.00116 * 195.96384 * 3 2 1 20 20 C 1.38876 * 120.07641 * 296.04430 * 19 3 2 21 21 C 1.38114 * 119.93885 * 179.97438 * 20 19 3 22 22 C 1.38290 * 120.09521 * 0.02562 * 21 20 19 23 23 C 1.38274 * 120.15483 * 359.97268 * 22 21 20 24 24 C 1.38211 * 120.06047 * 0.02732 * 23 22 21 25 25 Cl 1.73607 * 120.04760 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.47475 * 300.70611 * 1 2 3 27 27 H 1.09002 * 109.47595 * 60.71259 * 1 2 3 28 28 H 1.09004 * 109.46563 * 180.71070 * 1 2 3 29 29 H 1.09007 * 109.47200 * 240.00079 * 2 1 3 30 30 H 1.09004 * 109.47798 * 119.99979 * 2 1 3 31 31 H 1.09004 * 109.46878 * 319.83371 * 4 3 2 32 32 H 1.09002 * 109.47409 * 79.83982 * 4 3 2 33 33 H 1.07996 * 119.87638 * 359.97246 * 6 5 4 34 34 H 1.07996 * 120.12977 * 180.27403 * 7 6 5 35 35 H 0.96997 * 119.99813 * 179.97438 * 12 11 9 36 36 H 1.08005 * 120.12750 * 179.97438 * 17 8 7 37 37 H 1.07999 * 119.87813 * 179.97438 * 18 17 8 38 38 H 1.08008 * 120.03502 * 359.97438 * 20 19 3 39 39 H 1.08007 * 119.95482 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.92563 * 180.02562 * 22 21 20 41 41 H 1.07997 * 119.97102 * 179.75185 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7957 2.0225 1.3044 5 6 1.8420 3.5204 1.1459 6 6 3.0285 4.2000 1.3751 7 6 3.0838 5.5672 1.2279 8 6 1.9272 6.2766 0.8548 9 6 1.9706 7.6821 0.7071 10 1 2.8910 8.1665 0.4161 11 6 0.8206 8.4457 0.9378 12 7 -0.2303 7.8953 1.4890 13 14 0.7866 10.2510 0.4590 14 1 0.2938 10.3840 -0.9356 15 1 -0.1181 10.9895 1.3762 16 1 2.1571 10.8146 0.5555 17 6 0.7272 5.5770 0.6304 18 6 0.6964 4.2091 0.7780 19 6 3.3692 1.4391 -0.3588 20 6 4.3285 0.8420 0.4485 21 6 5.6614 0.8968 0.0909 22 6 6.0420 1.5457 -1.0695 23 6 5.0901 2.1415 -1.8763 24 6 3.7545 2.0906 -1.5246 25 17 2.5597 2.8393 -2.5374 26 1 -0.3634 0.5247 0.8835 27 1 -0.3634 0.5027 -0.8963 28 1 -0.3632 -1.0277 0.0127 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.8196 1.7280 1.6899 32 1 2.5721 1.7067 2.0012 33 1 3.9136 3.6541 1.6663 34 1 4.0102 6.0942 1.4026 35 1 -1.0272 8.4246 1.6493 36 1 -0.1665 6.1115 0.3441 37 1 -0.2236 3.6700 0.6066 38 1 4.0326 0.3353 1.3553 39 1 6.4077 0.4322 0.7184 40 1 7.0850 1.5865 -1.3467 41 1 5.3910 2.6509 -2.7798 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559785891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:32 Heat of formation + Delta-G solvation = 29.685189 kcal Electronic energy + Delta-G solvation = -23737.418676 eV Core-core repulsion = 20413.973751 eV Total energy + Delta-G solvation = -3323.444925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.01815 -39.29750 -37.77752 -37.06430 -35.49261 -32.58372 -32.09587 -31.58420 -31.05802 -29.63954 -27.82678 -25.33384 -23.94626 -23.20207 -22.73757 -22.18749 -21.09063 -19.16031 -18.33687 -17.23589 -16.99181 -16.63634 -16.22332 -15.86949 -15.59473 -15.44787 -15.01808 -14.85766 -14.68764 -14.21020 -14.02505 -13.75230 -13.39603 -13.25702 -13.12242 -12.86956 -12.76442 -12.62818 -12.51347 -12.41053 -12.28892 -12.19900 -12.04075 -11.74205 -11.47976 -11.39352 -11.16263 -11.02982 -9.78980 -9.47564 -9.29696 -9.22572 -9.06170 -8.53942 -6.30286 0.30781 0.33332 1.00988 1.23451 1.37086 1.48369 1.49523 1.52215 2.22836 2.69285 2.75328 3.06035 3.82576 3.94390 4.10170 4.14726 4.25100 4.30407 4.41128 4.43547 4.51656 4.56703 4.64266 4.65418 4.69283 4.76520 4.87838 5.01386 5.09779 5.14544 5.20809 5.30211 5.37787 5.43166 5.48526 5.50835 5.53916 5.78372 5.84276 5.99124 6.15061 6.18160 6.31475 6.46859 6.53242 6.78512 7.01232 7.11085 8.42251 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.004287 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.594684 B = 6530.090629 C = 7093.255669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.060 3.940 3 N -0.508 5.508 4 C 0.126 3.874 5 C -0.174 4.174 6 C -0.079 4.079 7 C -0.236 4.236 8 C 0.081 3.919 9 C -0.505 4.505 10 H 0.068 0.932 11 C 0.033 3.967 12 N -0.837 5.837 13 Si 0.980 3.020 14 H -0.264 1.264 15 H -0.267 1.267 16 H -0.260 1.260 17 C -0.179 4.179 18 C -0.081 4.081 19 C 0.100 3.900 20 C -0.148 4.148 21 C -0.107 4.107 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.030 4.030 25 Cl -0.076 7.076 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.284 0.716 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.284 -15.895 -2.989 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 N -0.230 5.230 4 C 0.001 3.999 5 C -0.176 4.176 6 C -0.097 4.097 7 C -0.256 4.256 8 C 0.079 3.921 9 C -0.535 4.535 10 H 0.086 0.914 11 C -0.180 4.180 12 N -0.464 5.464 13 Si 0.801 3.199 14 H -0.189 1.189 15 H -0.192 1.192 16 H -0.184 1.184 17 C -0.198 4.198 18 C -0.100 4.100 19 C 0.006 3.994 20 C -0.168 4.168 21 C -0.126 4.126 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.058 4.058 25 Cl -0.047 7.047 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.156 0.844 39 H 0.173 0.827 40 H 0.176 0.824 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.629 -15.545 -3.328 17.224 hybrid contribution -0.021 0.935 0.241 0.966 sum 6.608 -14.609 -3.087 16.329 Atomic orbital electron populations 1.21759 0.94122 1.02195 1.01928 1.22133 0.96626 0.86576 1.01211 1.59614 1.14033 1.18223 1.31107 1.20844 1.01106 0.90285 0.87704 1.19173 0.93264 0.94323 1.10813 1.20492 0.96322 0.93316 0.99601 1.21101 0.98158 0.94834 1.11460 1.17889 0.91963 0.93648 0.88601 1.19775 0.97229 0.92569 1.43971 0.91382 1.26664 0.94053 1.05243 0.92019 1.69863 1.04359 1.39863 1.32310 0.85240 0.79306 0.76345 0.78997 1.18927 1.19163 1.18397 1.21228 0.98625 0.93444 1.06542 1.20613 0.97051 0.93426 0.98906 1.18662 0.89871 0.97372 0.93532 1.21794 0.93923 1.00899 1.00186 1.21432 0.95707 0.98512 0.96940 1.21421 1.00244 0.97118 0.94340 1.21278 0.90492 1.00765 1.01667 1.21211 0.90628 0.99726 0.94206 1.98361 1.58143 1.80819 1.67346 0.92908 0.93345 0.90226 0.91052 0.93152 0.89856 0.93659 0.88149 0.89424 0.90555 0.88738 0.88447 0.84424 0.82732 0.82438 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.99 71.98 0.72 -2.37 16 2 C 0.06 1.38 5.26 86.30 0.45 1.83 16 3 N -0.51 -15.07 3.76 -699.46 -2.63 -17.70 16 4 C 0.13 4.04 4.87 85.56 0.42 4.45 16 5 C -0.17 -7.31 5.15 -19.67 -0.10 -7.41 16 6 C -0.08 -3.50 9.33 22.22 0.21 -3.29 16 7 C -0.24 -12.09 9.80 22.73 0.22 -11.87 16 8 C 0.08 4.58 5.55 -21.29 -0.12 4.46 16 9 C -0.50 -28.72 9.06 23.46 0.21 -28.51 16 10 H 0.07 3.78 7.87 -2.91 -0.02 3.75 16 11 C 0.03 1.75 5.25 85.26 0.45 2.20 16 12 N -0.84 -45.87 10.85 21.83 0.24 -45.64 16 13 Si 0.98 40.44 29.57 68.60 2.03 42.47 16 14 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 15 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 16 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 17 C -0.18 -9.81 8.66 22.73 0.20 -9.61 16 18 C -0.08 -3.85 9.69 22.22 0.22 -3.63 16 19 C 0.10 2.92 3.98 38.21 0.15 3.08 16 20 C -0.15 -3.47 8.52 22.39 0.19 -3.28 16 21 C -0.11 -2.09 10.04 22.25 0.22 -1.87 16 22 C -0.11 -2.29 10.04 22.29 0.22 -2.06 16 23 C -0.12 -3.17 9.82 22.27 0.22 -2.95 16 24 C -0.03 -0.94 6.34 22.44 0.14 -0.80 16 25 Cl -0.08 -2.67 28.44 -2.72 -0.08 -2.75 16 26 H 0.05 1.20 6.52 -2.39 -0.02 1.18 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.07 1.61 7.97 -2.38 -0.02 1.59 16 30 H 0.05 0.98 7.84 -2.38 -0.02 0.97 16 31 H 0.08 2.51 6.20 -2.39 -0.01 2.49 16 32 H 0.05 1.33 6.61 -2.39 -0.02 1.32 16 33 H 0.10 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 35 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 36 H 0.09 5.51 6.23 -2.91 -0.02 5.50 16 37 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 38 H 0.14 2.76 7.29 -2.91 -0.02 2.73 16 39 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 40 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -64.03 354.75 4.61 -59.42 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 1.03 Total: 25.82 kcal Atomic # 6 Polarization: -65.66 SS G_CDS: 4.02 Total: -61.63 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -2.39 Total: -63.34 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -0.08 Total: -2.75 kcal Total: -64.03 4.61 -59.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559785891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.106 kcal (2) G-P(sol) polarization free energy of solvation -64.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds