Wall clock time and date at job start Tue Mar 31 2020 10:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 H 1.08997 * 109.47909 * 54.99226 * 3 2 1 5 5 N 1.46501 * 109.46803 * 294.99452 * 3 2 1 6 6 C 1.34783 * 120.00137 * 155.00274 * 5 3 2 7 7 O 1.21276 * 119.99605 * 359.97438 * 6 5 3 8 8 C 1.50697 * 119.99993 * 180.02562 * 6 5 3 9 9 H 1.09006 * 109.47001 * 300.00134 * 8 6 5 10 10 C 1.50696 * 109.47329 * 59.99646 * 8 6 5 11 11 H 1.08001 * 119.99833 * 26.77931 * 10 8 6 12 12 C 1.37878 * 120.00147 * 206.77011 * 10 8 6 13 13 N 1.31517 * 120.00191 * 353.17942 * 12 10 8 14 14 Si 1.86801 * 120.00124 * 173.44443 * 12 10 8 15 15 H 1.48496 * 109.47362 * 269.73309 * 14 12 10 16 16 H 1.48501 * 109.46823 * 29.72934 * 14 12 10 17 17 H 1.48503 * 109.47193 * 149.72589 * 14 12 10 18 18 C 1.50695 * 109.47015 * 180.02562 * 8 6 5 19 19 C 1.38243 * 120.00066 * 292.98700 * 18 8 6 20 20 C 1.38230 * 119.99726 * 179.78629 * 19 18 8 21 21 C 1.38228 * 120.00685 * 0.44545 * 20 19 18 22 22 C 1.38242 * 119.99727 * 359.80984 * 21 20 19 23 23 C 1.38232 * 120.00141 * 113.26393 * 18 8 6 24 24 C 1.52999 * 109.47160 * 175.00053 * 3 2 1 25 25 F 1.39898 * 109.47401 * 179.97438 * 24 3 2 26 26 F 1.39905 * 109.46961 * 299.99578 * 24 3 2 27 27 F 1.39902 * 109.47151 * 59.99200 * 24 3 2 28 28 H 1.09005 * 109.47294 * 300.00985 * 1 2 3 29 29 H 1.09007 * 109.47069 * 60.00179 * 1 2 3 30 30 H 1.08996 * 109.47573 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47277 * 239.99043 * 2 1 3 32 32 H 1.09006 * 109.46375 * 119.99550 * 2 1 3 33 33 H 0.97005 * 119.99926 * 335.00243 * 5 3 2 34 34 H 0.96997 * 119.99908 * 354.82939 * 13 12 10 35 35 H 1.08004 * 119.99357 * 0.02562 * 19 18 8 36 36 H 1.08007 * 119.99376 * 180.27416 * 20 19 18 37 37 H 1.08003 * 120.00550 * 179.83252 * 21 20 19 38 38 H 1.07998 * 119.99657 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00069 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6525 2.0973 -1.2519 6 6 1.5258 3.4383 -1.2998 7 8 1.7320 4.1027 -0.3064 8 6 1.1266 4.1119 -2.5874 9 1 1.8650 3.8894 -3.3579 10 6 -0.2231 3.6028 -3.0233 11 1 -0.9234 3.2326 -2.2892 12 6 -0.5640 3.6098 -4.3593 13 7 0.2302 4.1820 -5.2377 14 14 -2.1575 2.8130 -4.9208 15 1 -1.9079 1.3874 -5.2532 16 1 -3.1640 2.8984 -3.8322 17 1 -2.6676 3.5198 -6.1231 18 6 1.0571 5.6021 -2.3742 19 6 0.0874 6.1376 -1.5473 20 6 0.0265 7.5041 -1.3483 21 6 0.9294 8.3361 -1.9833 22 6 1.8958 7.8011 -2.8145 23 6 1.9595 6.4341 -3.0101 24 6 3.5648 1.4442 0.1257 25 9 4.0313 2.7632 0.1251 26 9 3.9349 0.8188 1.3212 27 9 4.1226 0.7522 -0.9547 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8898 32 1 1.8932 -0.5138 0.8901 33 1 1.4872 1.5658 -2.0464 34 1 1.0170 4.6638 -4.9385 35 1 -0.6202 5.4878 -1.0537 36 1 -0.7285 7.9220 -0.6987 37 1 0.8801 9.4040 -1.8300 38 1 2.6010 8.4511 -3.3109 39 1 2.7146 6.0161 -3.6593 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585416680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:36 Heat of formation + Delta-G solvation = -187.179522 kcal Electronic energy + Delta-G solvation = -27468.416709 eV Core-core repulsion = 23153.001920 eV Total energy + Delta-G solvation = -4315.414790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.89404 -47.44719 -47.30354 -39.54511 -38.07267 -35.93513 -34.05443 -31.99663 -30.91149 -30.07010 -28.71668 -26.97389 -23.96414 -23.64278 -21.79957 -21.62262 -20.86098 -19.77320 -18.34923 -18.10265 -17.64795 -17.38555 -16.25636 -15.93838 -15.63530 -14.54917 -14.40800 -14.23786 -14.10894 -13.91297 -13.87873 -13.81389 -13.61514 -13.49121 -13.44159 -13.26426 -12.87469 -12.72032 -12.52541 -12.24375 -12.21090 -11.65296 -11.52270 -11.27485 -11.08374 -10.99975 -10.91862 -10.36139 -10.26753 -10.21551 -9.09754 -8.99355 -8.88196 -8.68547 -8.06977 -7.71378 -6.61715 -4.40470 2.23458 2.28123 2.81155 3.28662 3.32361 3.39854 3.48550 3.49308 3.94952 4.13646 4.33989 4.46964 4.70830 4.82200 4.93133 5.10089 5.19526 5.41691 5.57009 5.62850 5.65824 5.77503 5.82963 5.91387 6.02614 6.06500 6.25947 6.34622 6.41201 6.55255 6.70671 6.81830 6.92771 7.25046 7.30289 7.50831 7.75762 7.86964 7.99212 8.13599 8.53323 8.88946 9.32518 10.75797 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.005955 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.689030 B = 4700.998526 C = 6244.956030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.109 3.891 4 H 0.124 0.876 5 N -0.719 5.719 6 C 0.536 3.464 7 O -0.545 6.545 8 C 0.047 3.953 9 H 0.066 0.934 10 C -0.596 4.596 11 H 0.060 0.940 12 C 0.033 3.967 13 N -0.892 5.892 14 Si 1.069 2.931 15 H -0.285 1.285 16 H -0.287 1.287 17 H -0.284 1.284 18 C -0.023 4.023 19 C -0.078 4.078 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.128 4.128 23 C -0.126 4.126 24 C 0.431 3.569 25 F -0.171 7.171 26 F -0.188 7.188 27 F -0.185 7.185 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.415 0.585 34 H 0.276 0.724 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 -5.887 7.733 9.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.000 4.000 4 H 0.142 0.858 5 N -0.373 5.373 6 C 0.326 3.674 7 O -0.421 6.421 8 C 0.026 3.974 9 H 0.084 0.916 10 C -0.633 4.633 11 H 0.078 0.922 12 C -0.175 4.175 13 N -0.525 5.525 14 Si 0.897 3.103 15 H -0.211 1.211 16 H -0.213 1.213 17 H -0.209 1.209 18 C -0.024 4.024 19 C -0.096 4.096 20 C -0.150 4.150 21 C -0.163 4.163 22 C -0.146 4.146 23 C -0.144 4.144 24 C 0.375 3.625 25 F -0.153 7.153 26 F -0.170 7.170 27 F -0.167 7.167 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.252 0.748 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.579 -5.744 7.076 9.249 hybrid contribution 1.171 0.239 0.975 1.542 sum 2.750 -5.505 8.051 10.133 Atomic orbital electron populations 1.21731 0.93350 1.02211 1.03442 1.21821 0.98464 0.92539 1.04139 1.22005 0.86874 0.97738 0.93398 0.85823 1.45944 1.71624 1.08195 1.11500 1.21538 0.73317 0.80885 0.91708 1.90630 1.49868 1.64018 1.37602 1.18146 1.00123 0.88515 0.90653 0.91576 1.21571 0.99167 1.47134 0.95421 0.92209 1.25860 1.03228 0.95612 0.92796 1.70740 1.14548 1.30041 1.37171 0.83525 0.74590 0.76229 0.75973 1.21103 1.21250 1.20924 1.20093 0.92661 0.96305 0.93319 1.20785 0.97529 0.93991 0.97327 1.20983 0.99348 0.94047 1.00663 1.20835 0.97191 0.98591 0.99635 1.20892 0.99045 0.95047 0.99618 1.20975 0.99197 0.93496 1.00782 1.21529 0.93861 0.73854 0.73244 1.93251 1.90506 1.35494 1.96014 1.93138 1.93323 1.82917 1.47620 1.93151 1.87849 1.79732 1.55947 0.92398 0.90996 0.91993 0.90062 0.89723 0.74849 0.91279 0.86957 0.87379 0.87477 0.87348 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.80 37.16 0.36 -1.24 16 2 C -0.13 -1.43 5.23 -26.73 -0.14 -1.57 16 3 C 0.11 1.56 2.06 -67.93 -0.14 1.42 16 4 H 0.12 1.86 7.58 -51.93 -0.39 1.47 16 5 N -0.72 -12.21 4.35 -53.81 -0.23 -12.44 16 6 C 0.54 11.24 6.58 -10.98 -0.07 11.17 16 7 O -0.54 -12.54 14.03 5.56 0.08 -12.46 16 8 C 0.05 1.07 1.92 -94.08 -0.18 0.89 16 9 H 0.07 1.58 6.82 -51.93 -0.35 1.23 16 10 C -0.60 -14.30 7.43 -34.44 -0.26 -14.56 16 11 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 12 C 0.03 0.82 5.45 -17.82 -0.10 0.72 16 13 N -0.89 -24.11 13.56 55.43 0.75 -23.36 16 14 Si 1.07 22.58 29.91 -169.99 -5.08 17.50 16 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 C -0.02 -0.52 4.03 -104.62 -0.42 -0.94 16 19 C -0.08 -1.74 8.36 -39.58 -0.33 -2.07 16 20 C -0.13 -2.58 10.05 -39.59 -0.40 -2.98 16 21 C -0.14 -2.66 10.05 -39.58 -0.40 -3.06 16 22 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 23 C -0.13 -2.72 9.24 -39.58 -0.37 -3.08 16 24 C 0.43 6.59 2.82 37.16 0.10 6.70 16 25 F -0.17 -3.17 15.68 2.25 0.04 -3.14 16 26 F -0.19 -2.64 16.71 2.25 0.04 -2.60 16 27 F -0.19 -2.80 16.81 2.25 0.04 -2.76 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.90 7.75 -51.92 -0.40 0.50 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.83 7.94 -51.93 -0.41 0.42 16 32 H 0.08 0.79 7.66 -51.93 -0.40 0.39 16 33 H 0.41 6.65 8.49 -40.82 -0.35 6.31 16 34 H 0.28 7.42 6.29 -40.82 -0.26 7.16 16 35 H 0.11 2.52 7.86 -52.48 -0.41 2.11 16 36 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 37 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.11 2.23 7.96 -52.49 -0.42 1.81 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -28.75 342.04 -6.66 -35.41 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -4.71 Total: 10.15 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.73 Total: -11.45 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.52 Total: -35.80 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 9 Polarization: -8.61 SS G_CDS: 0.11 Total: -8.50 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.08 Total: 17.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.75 -6.66 -35.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585416680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.766 kcal (2) G-P(sol) polarization free energy of solvation -28.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds