Wall clock time and date at job start Tue Mar 31 2020 10:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 H 1.08997 * 109.47909 * 54.99226 * 3 2 1 5 5 N 1.46501 * 109.46803 * 294.99452 * 3 2 1 6 6 C 1.34783 * 120.00137 * 155.00274 * 5 3 2 7 7 O 1.21276 * 119.99605 * 359.97438 * 6 5 3 8 8 C 1.50697 * 119.99993 * 180.02562 * 6 5 3 9 9 H 1.09006 * 109.47001 * 300.00134 * 8 6 5 10 10 C 1.50696 * 109.47329 * 59.99646 * 8 6 5 11 11 H 1.08001 * 119.99833 * 26.77931 * 10 8 6 12 12 C 1.37878 * 120.00147 * 206.77011 * 10 8 6 13 13 N 1.31517 * 120.00191 * 353.17942 * 12 10 8 14 14 Si 1.86801 * 120.00124 * 173.44443 * 12 10 8 15 15 H 1.48496 * 109.47362 * 269.73309 * 14 12 10 16 16 H 1.48501 * 109.46823 * 29.72934 * 14 12 10 17 17 H 1.48503 * 109.47193 * 149.72589 * 14 12 10 18 18 C 1.50695 * 109.47015 * 180.02562 * 8 6 5 19 19 C 1.38243 * 120.00066 * 292.98700 * 18 8 6 20 20 C 1.38230 * 119.99726 * 179.78629 * 19 18 8 21 21 C 1.38228 * 120.00685 * 0.44545 * 20 19 18 22 22 C 1.38242 * 119.99727 * 359.80984 * 21 20 19 23 23 C 1.38232 * 120.00141 * 113.26393 * 18 8 6 24 24 C 1.52999 * 109.47160 * 175.00053 * 3 2 1 25 25 F 1.39898 * 109.47401 * 179.97438 * 24 3 2 26 26 F 1.39905 * 109.46961 * 299.99578 * 24 3 2 27 27 F 1.39902 * 109.47151 * 59.99200 * 24 3 2 28 28 H 1.09005 * 109.47294 * 300.00985 * 1 2 3 29 29 H 1.09007 * 109.47069 * 60.00179 * 1 2 3 30 30 H 1.08996 * 109.47573 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47277 * 239.99043 * 2 1 3 32 32 H 1.09006 * 109.46375 * 119.99550 * 2 1 3 33 33 H 0.97005 * 119.99926 * 335.00243 * 5 3 2 34 34 H 0.96997 * 119.99908 * 354.82939 * 13 12 10 35 35 H 1.08004 * 119.99357 * 0.02562 * 19 18 8 36 36 H 1.08007 * 119.99376 * 180.27416 * 20 19 18 37 37 H 1.08003 * 120.00550 * 179.83252 * 21 20 19 38 38 H 1.07998 * 119.99657 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00069 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6525 2.0973 -1.2519 6 6 1.5258 3.4383 -1.2998 7 8 1.7320 4.1027 -0.3064 8 6 1.1266 4.1119 -2.5874 9 1 1.8650 3.8894 -3.3579 10 6 -0.2231 3.6028 -3.0233 11 1 -0.9234 3.2326 -2.2892 12 6 -0.5640 3.6098 -4.3593 13 7 0.2302 4.1820 -5.2377 14 14 -2.1575 2.8130 -4.9208 15 1 -1.9079 1.3874 -5.2532 16 1 -3.1640 2.8984 -3.8322 17 1 -2.6676 3.5198 -6.1231 18 6 1.0571 5.6021 -2.3742 19 6 0.0874 6.1376 -1.5473 20 6 0.0265 7.5041 -1.3483 21 6 0.9294 8.3361 -1.9833 22 6 1.8958 7.8011 -2.8145 23 6 1.9595 6.4341 -3.0101 24 6 3.5648 1.4442 0.1257 25 9 4.0313 2.7632 0.1251 26 9 3.9349 0.8188 1.3212 27 9 4.1226 0.7522 -0.9547 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8898 32 1 1.8932 -0.5138 0.8901 33 1 1.4872 1.5658 -2.0464 34 1 1.0170 4.6638 -4.9385 35 1 -0.6202 5.4878 -1.0537 36 1 -0.7285 7.9220 -0.6987 37 1 0.8801 9.4040 -1.8300 38 1 2.6010 8.4511 -3.3109 39 1 2.7146 6.0161 -3.6593 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585416680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:35 Heat of formation + Delta-G solvation = -202.214981 kcal Electronic energy + Delta-G solvation = -27469.068696 eV Core-core repulsion = 23153.001920 eV Total energy + Delta-G solvation = -4316.066776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.16105 -48.66591 -48.64264 -41.15760 -39.60885 -37.25822 -35.87801 -33.29891 -32.61265 -31.65034 -29.98186 -28.58934 -25.70681 -24.88699 -23.31325 -23.02659 -22.20099 -21.39126 -19.64666 -19.40562 -19.20046 -18.85291 -17.80615 -17.52400 -17.03426 -16.19786 -15.83107 -15.62095 -15.55444 -15.41720 -15.24141 -15.09868 -14.88869 -14.81738 -14.79379 -14.71982 -14.24207 -14.08417 -14.02605 -13.84026 -13.61858 -13.25396 -12.86219 -12.59941 -12.55497 -12.26030 -11.98103 -11.97018 -11.92121 -11.79688 -10.91011 -10.71742 -10.58479 -10.35406 -9.66639 -9.35643 -8.60241 -6.38285 0.64089 0.69187 1.45283 1.59000 1.65902 1.82166 1.86875 2.06523 2.58501 2.73558 2.92318 3.07066 3.19215 3.25580 3.68688 3.89254 4.08575 4.19532 4.20430 4.31901 4.37014 4.37945 4.47164 4.64788 4.72547 4.82587 4.89132 5.01302 5.05329 5.23870 5.28982 5.31886 5.38776 5.67873 5.71344 5.72706 6.04019 6.15963 6.29797 6.44260 6.56063 7.26043 7.41190 8.77481 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.005955 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.689030 B = 4700.998526 C = 6244.956030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.109 3.891 4 H 0.118 0.882 5 N -0.708 5.708 6 C 0.537 3.463 7 O -0.568 6.568 8 C 0.045 3.955 9 H 0.046 0.954 10 C -0.585 4.585 11 H 0.055 0.945 12 C -0.010 4.010 13 N -0.923 5.923 14 Si 1.110 2.890 15 H -0.265 1.265 16 H -0.274 1.274 17 H -0.294 1.294 18 C -0.049 4.049 19 C -0.105 4.105 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.128 4.128 23 C -0.151 4.151 24 C 0.432 3.568 25 F -0.193 7.193 26 F -0.177 7.177 27 F -0.183 7.183 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.419 0.581 34 H 0.265 0.735 35 H 0.098 0.902 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 -6.206 8.573 10.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.001 3.999 4 H 0.136 0.864 5 N -0.361 5.361 6 C 0.326 3.674 7 O -0.447 6.447 8 C 0.024 3.976 9 H 0.064 0.936 10 C -0.623 4.623 11 H 0.074 0.926 12 C -0.211 4.211 13 N -0.558 5.558 14 Si 0.933 3.067 15 H -0.190 1.190 16 H -0.199 1.199 17 H -0.220 1.220 18 C -0.050 4.050 19 C -0.123 4.123 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.169 4.169 24 C 0.376 3.624 25 F -0.175 7.175 26 F -0.159 7.159 27 F -0.165 7.165 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.257 0.743 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.981 -6.107 7.934 10.060 hybrid contribution 1.425 0.373 0.790 1.672 sum 2.406 -5.734 8.724 10.713 Atomic orbital electron populations 1.21722 0.93081 1.03431 1.02311 1.21883 0.98528 0.89914 1.05815 1.22251 0.86294 0.99755 0.91586 0.86412 1.45783 1.70456 1.07013 1.12857 1.21193 0.73394 0.82108 0.90694 1.90603 1.51168 1.64909 1.37991 1.18085 0.99050 0.89456 0.91044 0.93627 1.21654 0.99448 1.45994 0.95159 0.92647 1.27030 1.05140 0.95644 0.93326 1.70833 1.15235 1.32016 1.37703 0.82997 0.71796 0.76453 0.75453 1.18958 1.19934 1.22030 1.20183 0.93902 0.96307 0.94628 1.20838 0.97772 0.95439 0.98270 1.21366 1.00090 0.93013 1.00632 1.21315 0.95800 1.00578 0.98091 1.21308 0.99625 0.94314 0.99303 1.21159 0.99496 0.94941 1.01335 1.21599 0.94120 0.73045 0.73619 1.93212 1.90824 1.37304 1.96152 1.93158 1.93261 1.82527 1.46916 1.93155 1.87885 1.79511 1.55941 0.92508 0.93148 0.89596 0.89042 0.87296 0.74323 0.92420 0.88355 0.84392 0.83341 0.84167 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.80 71.98 0.71 -2.19 16 2 C -0.12 -2.42 5.23 30.59 0.16 -2.26 16 3 C 0.11 3.06 2.06 44.99 0.09 3.15 16 4 H 0.12 3.50 7.58 -2.39 -0.02 3.48 16 5 N -0.71 -24.31 4.35 -442.54 -1.92 -26.23 16 6 C 0.54 23.20 6.58 87.65 0.58 23.78 16 7 O -0.57 -26.87 14.03 -3.02 -0.04 -26.91 16 8 C 0.04 2.14 1.92 -13.04 -0.02 2.11 16 9 H 0.05 2.32 6.82 -2.38 -0.02 2.30 16 10 C -0.59 -28.78 7.43 25.60 0.19 -28.59 16 11 H 0.06 2.72 7.82 -2.91 -0.02 2.70 16 12 C -0.01 -0.50 5.45 84.65 0.46 -0.04 16 13 N -0.92 -51.23 13.56 21.45 0.29 -50.94 16 14 Si 1.11 45.44 29.91 68.60 2.05 47.49 16 15 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 16 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 17 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 18 C -0.05 -2.33 4.03 -19.87 -0.08 -2.41 16 19 C -0.10 -4.73 8.36 22.27 0.19 -4.54 16 20 C -0.13 -5.01 10.05 22.27 0.22 -4.79 16 21 C -0.14 -4.80 10.05 22.27 0.22 -4.58 16 22 C -0.13 -4.71 10.05 22.27 0.22 -4.49 16 23 C -0.15 -6.63 9.24 22.27 0.21 -6.42 16 24 C 0.43 12.90 2.82 71.98 0.20 13.11 16 25 F -0.19 -7.23 15.68 44.97 0.71 -6.53 16 26 F -0.18 -4.68 16.71 44.97 0.75 -3.93 16 27 F -0.18 -5.37 16.81 44.97 0.76 -4.62 16 28 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.05 1.21 7.75 -2.38 -0.02 1.19 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.65 7.94 -2.39 -0.02 1.63 16 32 H 0.11 1.67 7.66 -2.38 -0.02 1.66 16 33 H 0.42 13.56 8.49 -92.70 -0.79 12.78 16 34 H 0.27 14.90 6.29 -92.71 -0.58 14.32 16 35 H 0.10 4.56 7.86 -2.91 -0.02 4.54 16 36 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 37 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 38 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.11 4.53 7.96 -2.91 -0.02 4.51 16 Total: -1.00 -63.42 342.04 6.42 -57.00 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.48 Total: 32.83 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 3.35 Total: -18.16 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -1.63 Total: -77.17 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.04 Total: -26.91 kcal Atomic # 9 Polarization: -17.29 SS G_CDS: 2.21 Total: -15.08 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.05 Total: 47.49 kcal Total: -63.42 6.42 -57.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585416680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.217 kcal (2) G-P(sol) polarization free energy of solvation -63.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds