Wall clock time and date at job start Tue Mar 31 2020 11:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.50697 * 109.47224 * 180.02562 * 13 12 2 15 15 C 1.38346 * 119.93499 * 269.72858 * 14 13 12 16 16 C 1.38311 * 120.23978 * 179.72134 * 15 14 13 17 17 C 1.38035 * 120.12046 * 0.55037 * 16 15 14 18 18 C 1.39320 * 119.87916 * 359.72421 * 17 16 15 19 19 C 1.48385 * 120.12398 * 180.02562 * 18 17 16 20 20 C 1.39337 * 120.11001 * 179.70268 * 19 18 17 21 21 C 1.38003 * 119.89352 * 179.72338 * 20 19 18 22 22 C 1.38437 * 120.10098 * 0.57464 * 21 20 19 23 23 Cl 1.73601 * 119.88992 * 179.69859 * 22 21 20 24 24 C 1.38445 * 120.22257 * 359.68165 * 22 21 20 25 25 C 1.37992 * 120.10501 * 0.04139 * 24 22 21 26 26 C 1.37996 * 119.94064 * 89.99833 * 14 13 12 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 32 32 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 33 33 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 34 34 H 1.07997 * 119.88121 * 359.97438 * 15 14 13 35 35 H 1.07995 * 119.93590 * 180.25107 * 16 15 14 36 36 H 1.07998 * 120.06066 * 179.70478 * 17 16 15 37 37 H 1.08007 * 120.05643 * 0.02562 * 20 19 18 38 38 H 1.07995 * 119.94998 * 180.25534 * 21 20 19 39 39 H 1.07994 * 119.94834 * 180.02562 * 24 22 21 40 40 H 1.07996 * 120.05604 * 180.02562 * 25 24 22 41 41 H 1.08000 * 120.06079 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5884 -0.5213 3.5558 15 6 1.6940 -1.1473 4.4055 16 6 2.1519 -1.8368 5.5136 17 6 3.5044 -1.8940 5.7837 18 6 4.4091 -1.2606 4.9345 19 6 5.8642 -1.3191 5.2193 20 6 6.7693 -0.6907 4.3664 21 6 8.1212 -0.7432 4.6387 22 6 8.5794 -1.4288 5.7507 23 17 10.2817 -1.4979 6.0836 24 6 7.6845 -2.0593 6.5982 25 6 6.3304 -2.0077 6.3375 26 6 3.9427 -0.5721 3.8162 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7088 1.1611 -3.4845 31 1 1.4496 -1.4978 1.4101 32 1 2.7588 1.0463 2.1182 33 1 1.0870 0.6164 2.5525 34 1 0.6347 -1.1010 4.2006 35 1 1.4497 -2.3271 6.1714 36 1 3.8605 -2.4286 6.6519 37 1 6.4131 -0.1593 3.4962 38 1 8.8231 -0.2530 3.9805 39 1 8.0468 -2.5926 7.4646 40 1 5.6330 -2.4995 6.9994 41 1 4.6397 -0.0797 3.1543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651494700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:22 Heat of formation + Delta-G solvation = 35.365535 kcal Electronic energy + Delta-G solvation = -22134.402830 eV Core-core repulsion = 18811.204223 eV Total energy + Delta-G solvation = -3323.198607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07361 -38.65428 -36.71308 -35.97292 -33.23992 -32.38377 -31.62422 -30.87831 -28.93316 -27.99558 -25.22040 -24.55895 -23.71047 -22.98245 -21.37604 -20.34527 -20.16308 -17.82189 -16.54019 -16.12353 -15.91780 -15.78262 -14.81095 -14.74302 -14.30603 -14.14567 -13.96542 -13.87585 -13.72686 -13.36784 -12.88240 -12.69608 -12.50667 -12.00372 -11.92725 -11.78887 -11.57120 -11.50197 -11.15983 -11.10627 -10.92422 -10.77963 -10.70341 -10.45023 -10.16056 -9.91105 -9.57452 -9.30807 -9.04908 -8.67226 -8.36956 -8.05302 -7.26816 -5.99455 -4.02846 0.45871 1.06389 1.48896 1.74900 1.89015 3.34329 3.37420 3.38126 3.41920 3.99690 4.42973 4.44611 4.47225 4.60890 4.93316 4.94685 5.01033 5.10993 5.20304 5.32085 5.34881 5.47148 5.56460 5.59812 5.67794 5.73034 5.96813 5.97208 6.03042 6.10354 6.21233 6.25121 6.46557 6.56678 6.62649 6.65930 6.79096 6.84562 7.04417 7.06803 7.32687 7.71897 7.86605 8.24732 8.49959 8.58593 9.04175 9.62543 11.07509 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.002698 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.954880 B =10376.155161 C =12035.836863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.289 1.289 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.677 5.677 13 C 0.093 3.907 14 C -0.063 4.063 15 C -0.109 4.109 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.059 4.059 19 C -0.027 4.027 20 C -0.099 4.099 21 C -0.105 4.105 22 C -0.041 4.041 23 Cl -0.077 7.077 24 C -0.109 4.109 25 C -0.104 4.104 26 C -0.083 4.083 27 H 0.028 0.972 28 H 0.005 0.995 29 H 0.089 0.911 30 H 0.260 0.740 31 H 0.326 0.674 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.879 -3.815 20.366 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.215 1.215 10 H -0.203 1.203 11 H -0.204 1.204 12 N -0.307 5.307 13 C -0.036 4.036 14 C -0.063 4.063 15 C -0.128 4.128 16 C -0.138 4.138 17 C -0.134 4.134 18 C -0.059 4.059 19 C -0.028 4.028 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.067 4.067 23 Cl -0.048 7.048 24 C -0.127 4.127 25 C -0.122 4.122 26 C -0.102 4.102 27 H 0.047 0.953 28 H 0.024 0.976 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.143 0.857 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.623 -3.603 20.061 22.984 hybrid contribution -0.578 -0.370 -0.654 0.948 sum 10.045 -3.973 19.407 22.211 Atomic orbital electron populations 1.22441 1.00704 0.99227 1.00528 1.19197 0.89619 0.94436 0.86368 0.94828 1.21115 1.30286 1.12479 0.89554 0.91978 1.24950 0.95322 0.95208 0.99038 1.69873 1.37254 1.23198 1.23471 0.86562 0.79211 0.79610 0.82003 1.21465 1.20258 1.20368 1.60891 1.58242 1.08793 1.02772 1.20923 0.98738 0.95228 0.88714 1.20013 0.93142 0.97351 0.95811 1.21195 0.99703 0.97288 0.94621 1.20994 0.95272 0.99763 0.97799 1.21091 0.93071 0.99918 0.99276 1.18669 0.91021 0.99929 0.96298 1.18935 0.92419 0.96786 0.94613 1.21334 0.91873 0.98915 0.99529 1.21025 0.96110 0.99046 0.96202 1.20990 0.84756 1.02822 0.98135 1.98367 1.13852 1.97438 1.95117 1.20949 0.92507 0.99822 0.99461 1.21184 0.94727 0.99095 0.97196 1.21137 0.95382 0.98096 0.95564 0.95323 0.97626 0.89194 0.93001 0.85715 0.90814 0.95253 0.86171 0.86097 0.86166 0.84272 0.84693 0.84936 0.84822 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.94 37.16 0.33 -3.68 16 2 C 0.21 5.21 2.57 -68.87 -0.18 5.03 16 3 H 0.03 0.91 7.80 -51.92 -0.40 0.50 16 4 C -0.50 -13.61 8.84 -34.44 -0.30 -13.91 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.51 11.32 55.43 0.63 -24.88 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.68 -14.05 6.22 -109.22 -0.68 -14.73 16 13 C 0.09 1.61 5.61 -4.98 -0.03 1.58 16 14 C -0.06 -0.93 5.39 -104.67 -0.56 -1.49 16 15 C -0.11 -1.43 9.69 -39.51 -0.38 -1.82 16 16 C -0.12 -1.36 10.03 -39.63 -0.40 -1.76 16 17 C -0.12 -1.29 9.43 -39.25 -0.37 -1.66 16 18 C -0.06 -0.74 5.88 -104.90 -0.62 -1.35 16 19 C -0.03 -0.31 5.88 -104.90 -0.62 -0.93 16 20 C -0.10 -1.08 9.43 -39.26 -0.37 -1.45 16 21 C -0.11 -1.07 9.81 -39.59 -0.39 -1.46 16 22 C -0.04 -0.41 6.32 -39.43 -0.25 -0.65 16 23 Cl -0.08 -0.71 28.95 -51.86 -1.50 -2.22 16 24 C -0.11 -1.00 9.81 -39.59 -0.39 -1.39 16 25 C -0.10 -1.00 9.43 -39.26 -0.37 -1.37 16 26 C -0.08 -1.17 9.08 -39.25 -0.36 -1.52 16 27 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 28 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 29 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.33 6.54 8.46 -39.30 -0.33 6.20 16 32 H 0.07 1.29 8.00 -51.93 -0.42 0.88 16 33 H 0.03 0.50 7.38 -51.93 -0.38 0.12 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.03 6.21 -52.49 -0.33 0.70 16 37 H 0.14 1.45 6.21 -52.48 -0.33 1.12 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.00 6.21 -52.49 -0.33 0.67 16 41 H 0.13 1.73 6.21 -52.49 -0.33 1.40 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -28.87 355.25 -11.76 -40.64 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.20 Total: 5.81 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -5.34 Total: -26.38 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: -0.05 Total: -39.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.87 -11.76 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.001 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds