Wall clock time and date at job start Tue Mar 31 2020 11:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.50697 * 109.47224 * 180.02562 * 13 12 2 15 15 C 1.38346 * 119.93499 * 269.72858 * 14 13 12 16 16 C 1.38311 * 120.23978 * 179.72134 * 15 14 13 17 17 C 1.38035 * 120.12046 * 0.55037 * 16 15 14 18 18 C 1.39320 * 119.87916 * 359.72421 * 17 16 15 19 19 C 1.48385 * 120.12398 * 180.02562 * 18 17 16 20 20 C 1.39337 * 120.11001 * 179.70268 * 19 18 17 21 21 C 1.38003 * 119.89352 * 179.72338 * 20 19 18 22 22 C 1.38437 * 120.10098 * 0.57464 * 21 20 19 23 23 Cl 1.73601 * 119.88992 * 179.69859 * 22 21 20 24 24 C 1.38445 * 120.22257 * 359.68165 * 22 21 20 25 25 C 1.37992 * 120.10501 * 0.04139 * 24 22 21 26 26 C 1.37996 * 119.94064 * 89.99833 * 14 13 12 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 32 32 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 33 33 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 34 34 H 1.07997 * 119.88121 * 359.97438 * 15 14 13 35 35 H 1.07995 * 119.93590 * 180.25107 * 16 15 14 36 36 H 1.07998 * 120.06066 * 179.70478 * 17 16 15 37 37 H 1.08007 * 120.05643 * 0.02562 * 20 19 18 38 38 H 1.07995 * 119.94998 * 180.25534 * 21 20 19 39 39 H 1.07994 * 119.94834 * 180.02562 * 24 22 21 40 40 H 1.07996 * 120.05604 * 180.02562 * 25 24 22 41 41 H 1.08000 * 120.06079 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5884 -0.5213 3.5558 15 6 1.6940 -1.1473 4.4055 16 6 2.1519 -1.8368 5.5136 17 6 3.5044 -1.8940 5.7837 18 6 4.4091 -1.2606 4.9345 19 6 5.8642 -1.3191 5.2193 20 6 6.7693 -0.6907 4.3664 21 6 8.1212 -0.7432 4.6387 22 6 8.5794 -1.4288 5.7507 23 17 10.2817 -1.4979 6.0836 24 6 7.6845 -2.0593 6.5982 25 6 6.3304 -2.0077 6.3375 26 6 3.9427 -0.5721 3.8162 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7088 1.1611 -3.4845 31 1 1.4496 -1.4978 1.4101 32 1 2.7588 1.0463 2.1182 33 1 1.0870 0.6164 2.5525 34 1 0.6347 -1.1010 4.2006 35 1 1.4497 -2.3271 6.1714 36 1 3.8605 -2.4286 6.6519 37 1 6.4131 -0.1593 3.4962 38 1 8.8231 -0.2530 3.9805 39 1 8.0468 -2.5926 7.4646 40 1 5.6330 -2.4995 6.9994 41 1 4.6397 -0.0797 3.1543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651494700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:22 Heat of formation + Delta-G solvation = 21.910919 kcal Electronic energy + Delta-G solvation = -22134.986266 eV Core-core repulsion = 18811.204223 eV Total energy + Delta-G solvation = -3323.782043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.94590 -39.57596 -37.77729 -37.34476 -34.85747 -33.49795 -32.72343 -31.95333 -30.03100 -29.39497 -27.25577 -25.93218 -24.58316 -23.90757 -22.28140 -22.13337 -21.29322 -18.75401 -18.28842 -17.10556 -16.92321 -16.77286 -16.67119 -15.99520 -15.47583 -15.39456 -14.96874 -14.76415 -14.64881 -14.52547 -14.40156 -13.85041 -13.75618 -13.50217 -13.21200 -12.88471 -12.81877 -12.74271 -12.67510 -12.44625 -12.34976 -12.16116 -12.10644 -11.93605 -11.80487 -11.49490 -11.05209 -10.48655 -10.44900 -10.05940 -9.71051 -9.01269 -8.88770 -8.09885 -6.21217 -0.39052 0.31161 0.49874 0.85265 1.13573 1.43299 1.44753 1.52623 2.43551 2.54465 3.05657 3.18266 3.56511 3.66982 3.78926 3.89308 4.02198 4.08679 4.21157 4.31269 4.35092 4.41954 4.47205 4.66378 4.70276 4.76889 4.78423 4.88314 4.94239 5.01427 5.09047 5.15136 5.23426 5.24715 5.30505 5.39741 5.56424 5.68240 5.71984 5.75319 5.80246 5.82515 6.09367 6.26516 6.62972 6.79784 6.93312 7.48717 8.95264 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.002698 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.954880 B =10376.155161 C =12035.836863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.002 0.998 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.284 1.284 10 H -0.274 1.274 11 H -0.271 1.271 12 N -0.680 5.680 13 C 0.100 3.900 14 C -0.082 4.082 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.111 4.111 18 C -0.062 4.062 19 C -0.045 4.045 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.047 4.047 23 Cl -0.072 7.072 24 C -0.108 4.108 25 C -0.099 4.099 26 C -0.102 4.102 27 H 0.032 0.968 28 H 0.026 0.974 29 H 0.062 0.938 30 H 0.261 0.739 31 H 0.331 0.669 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.128 0.872 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.289 -5.610 22.448 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.108 3.892 3 H 0.020 0.980 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.209 1.209 10 H -0.200 1.200 11 H -0.196 1.196 12 N -0.310 5.310 13 C -0.029 4.029 14 C -0.082 4.082 15 C -0.137 4.137 16 C -0.133 4.133 17 C -0.128 4.128 18 C -0.062 4.062 19 C -0.045 4.045 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.074 4.074 23 Cl -0.043 7.043 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.120 4.120 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.145 0.855 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.174 0.826 40 H 0.178 0.822 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.037 -5.401 22.160 25.339 hybrid contribution -0.627 0.195 -1.198 1.366 sum 10.410 -5.206 20.962 23.977 Atomic orbital electron populations 1.22240 0.99862 0.99308 1.00188 1.18949 0.90150 0.92705 0.87430 0.97976 1.21416 1.30495 1.12491 0.91087 0.92868 1.25707 0.95453 0.95877 1.01839 1.69999 1.37959 1.24227 1.24069 0.85590 0.78644 0.78713 0.78529 1.20921 1.19962 1.19649 1.60726 1.57986 1.09329 1.02994 1.20831 0.98679 0.94691 0.88701 1.19787 0.93885 0.98974 0.95596 1.21346 0.99818 0.97433 0.95090 1.21351 0.96043 0.98691 0.97180 1.21503 0.92800 0.98914 0.99612 1.18833 0.92047 0.99476 0.95824 1.19025 0.91845 0.97945 0.95691 1.21400 0.92470 0.99446 0.99753 1.21146 0.95951 0.99363 0.96731 1.21166 0.85260 1.02771 0.98195 1.98369 1.13487 1.97401 1.95041 1.21249 0.92250 0.99283 0.99814 1.21454 0.95382 0.98232 0.96598 1.21160 0.95046 0.99191 0.96651 0.94881 0.95458 0.91914 0.92965 0.85145 0.92138 0.95004 0.85452 0.82907 0.82867 0.84918 0.83907 0.82570 0.82228 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.50 8.94 71.98 0.64 -6.85 16 2 C 0.22 10.98 2.57 44.17 0.11 11.10 16 3 H 0.00 0.13 7.80 -2.38 -0.02 0.11 16 4 C -0.52 -28.96 8.84 25.60 0.23 -28.73 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.53 5.30 84.66 0.45 0.97 16 7 N -0.92 -53.37 11.32 21.45 0.24 -53.13 16 8 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 N -0.68 -28.94 6.22 -499.46 -3.11 -32.04 16 13 C 0.10 3.57 5.61 85.56 0.48 4.05 16 14 C -0.08 -2.45 5.39 -19.90 -0.11 -2.55 16 15 C -0.12 -2.93 9.69 22.31 0.22 -2.72 16 16 C -0.11 -2.24 10.03 22.24 0.22 -2.02 16 17 C -0.11 -2.11 9.43 22.48 0.21 -1.90 16 18 C -0.06 -1.46 5.88 -20.04 -0.12 -1.58 16 19 C -0.04 -0.96 5.88 -20.04 -0.12 -1.08 16 20 C -0.11 -2.49 9.43 22.48 0.21 -2.28 16 21 C -0.11 -2.26 9.81 22.26 0.22 -2.04 16 22 C -0.05 -0.88 6.32 22.37 0.14 -0.73 16 23 Cl -0.07 -1.23 28.95 -2.72 -0.08 -1.31 16 24 C -0.11 -1.69 9.81 22.26 0.22 -1.47 16 25 C -0.10 -1.62 9.43 22.48 0.21 -1.40 16 26 C -0.10 -2.90 9.08 22.48 0.20 -2.70 16 27 H 0.03 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.03 1.14 7.45 -2.39 -0.02 1.12 16 29 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 30 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.33 13.39 8.46 -89.70 -0.76 12.63 16 32 H 0.06 2.26 8.00 -2.39 -0.02 2.25 16 33 H 0.03 1.11 7.38 -2.39 -0.02 1.09 16 34 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.15 1.87 6.21 -2.91 -0.02 1.85 16 37 H 0.13 2.98 6.21 -2.91 -0.02 2.96 16 38 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.16 1.68 6.21 -2.91 -0.02 1.66 16 41 H 0.12 3.43 6.21 -2.91 -0.02 3.41 16 Total: -1.00 -62.71 355.25 2.81 -59.91 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.30 Total: 22.24 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 3.43 Total: -41.95 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -2.86 Total: -85.17 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -62.71 2.81 -59.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.820 kcal (2) G-P(sol) polarization free energy of solvation -62.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds