Wall clock time and date at job start Tue Mar 31 2020 11:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46450 * 2 1 4 4 C 1.46502 * 119.99901 * 269.99630 * 3 2 1 5 5 C 1.50705 * 109.47170 * 270.00476 * 4 3 2 6 6 C 1.38634 * 119.74821 * 269.72976 * 5 4 3 7 7 C 1.37621 * 120.24688 * 179.72286 * 6 5 4 8 8 C 1.40714 * 119.74091 * 0.56882 * 7 6 5 9 9 C 1.41397 * 120.24030 * 179.68687 * 8 7 6 10 10 H 1.08000 * 119.99636 * 204.40763 * 9 8 7 11 11 C 1.39945 * 120.00160 * 24.39937 * 9 8 7 12 12 N 1.30819 * 119.99922 * 17.85268 * 11 9 8 13 13 Si 1.86804 * 119.99894 * 197.84937 * 11 9 8 14 14 H 1.48497 * 109.47223 * 60.00192 * 13 11 9 15 15 H 1.48500 * 109.46992 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47100 * 300.00038 * 13 11 9 17 17 C 1.40709 * 119.51711 * 359.70339 * 8 7 6 18 18 C 1.37622 * 119.74204 * 0.02562 * 17 8 7 19 19 C 1.39674 * 120.00129 * 90.00058 * 3 2 1 20 20 C 1.38939 * 120.06366 * 179.71894 * 19 3 2 21 21 C 1.38092 * 119.94585 * 180.23212 * 20 19 3 22 22 C 1.38290 * 120.08798 * 0.06780 * 21 20 19 23 23 C 1.38379 * 120.13450 * 359.95616 * 22 21 20 24 24 Cl 1.73608 * 119.97118 * 180.02562 * 23 22 21 25 25 C 1.38239 * 120.05117 * 0.02562 * 23 22 21 26 26 H 1.08999 * 109.47392 * 60.00109 * 1 2 3 27 27 H 1.09004 * 109.46533 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47501 * 299.99722 * 1 2 3 29 29 H 1.08996 * 109.47501 * 240.00277 * 2 1 3 30 30 H 1.08998 * 109.46998 * 119.99226 * 2 1 3 31 31 H 1.08997 * 109.47041 * 30.00276 * 4 3 2 32 32 H 1.09002 * 109.47061 * 150.00318 * 4 3 2 33 33 H 1.07996 * 119.87547 * 359.97330 * 6 5 4 34 34 H 1.08000 * 120.12637 * 180.27366 * 7 6 5 35 35 H 0.97005 * 120.00206 * 179.97438 * 12 11 9 36 36 H 1.08004 * 120.13444 * 179.97438 * 17 8 7 37 37 H 1.08003 * 119.87392 * 180.02562 * 18 17 8 38 38 H 1.07993 * 120.02903 * 0.25321 * 20 19 3 39 39 H 1.08005 * 119.95516 * 180.02562 * 21 20 19 40 40 H 1.07998 * 119.92882 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.04127 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7038 6 6 4.6819 2.7131 -1.3052 7 6 5.9860 2.5035 -1.6918 8 6 6.3044 1.3999 -2.5046 9 6 7.6397 1.1782 -2.9134 10 1 7.8428 0.6129 -3.8110 11 6 8.6980 1.6915 -2.1552 12 7 8.4961 2.0621 -0.9169 13 14 10.3991 1.8474 -2.9112 14 1 10.3355 2.7453 -4.0923 15 1 11.3365 2.4137 -1.9083 16 1 10.8777 0.5067 -3.3339 17 6 5.2842 0.5186 -2.9078 18 6 3.9879 0.7446 -2.5046 19 6 2.2510 2.0398 1.2096 20 6 2.7195 3.3478 1.2111 21 6 2.9533 3.9949 2.4084 22 6 2.7231 3.3422 3.6057 23 6 2.2569 2.0393 3.6083 24 17 1.9687 1.2243 5.1138 25 6 2.0206 1.3863 2.4130 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0953 3.1412 -1.1384 33 1 4.4343 3.5623 -0.6857 34 1 6.7612 3.1862 -1.3765 35 1 9.2297 2.4175 -0.3912 36 1 5.5173 -0.3314 -3.5320 37 1 3.2033 0.0693 -2.8125 38 1 2.9004 3.8582 0.2767 39 1 3.3172 5.0118 2.4098 40 1 2.9072 3.8506 4.5406 41 1 1.6564 0.3696 2.4151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652727195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:36 Heat of formation + Delta-G solvation = 36.295720 kcal Electronic energy + Delta-G solvation = -23245.894532 eV Core-core repulsion = 19922.736261 eV Total energy + Delta-G solvation = -3323.158271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.61006 -37.74630 -36.63312 -35.81833 -33.82743 -31.81065 -30.74126 -30.16147 -29.37474 -28.47335 -26.39000 -24.07373 -23.16458 -21.98085 -21.05477 -20.70983 -19.61154 -17.54500 -17.35014 -15.86315 -15.43729 -15.39171 -14.82392 -14.80248 -14.19691 -14.09850 -13.64859 -13.45823 -13.37270 -13.06375 -12.83306 -12.49315 -12.14453 -12.04825 -11.68658 -11.58493 -11.48541 -11.35612 -11.17322 -11.07006 -11.00609 -10.82981 -10.73579 -10.57227 -10.43869 -9.90132 -9.46461 -9.34740 -9.16508 -8.55745 -7.51054 -7.39995 -6.98312 -6.80752 -4.40695 1.48435 1.76848 2.27216 2.65821 3.02070 3.03767 3.04852 3.10257 3.60054 3.88948 4.01074 4.58292 4.97911 5.09212 5.28380 5.31972 5.40521 5.43672 5.57080 5.62834 5.65416 5.75126 5.85054 5.94371 5.96288 6.00489 6.08832 6.23367 6.28276 6.31006 6.45690 6.53812 6.70038 6.89536 6.92506 7.02057 7.22322 7.30991 7.55102 7.59340 7.74856 7.81945 8.00150 8.06663 8.24838 8.59006 8.84142 8.92322 10.13012 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.003693 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.832599 B = 7579.956651 C = 8714.289827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.610 5.610 4 C 0.183 3.817 5 C -0.240 4.240 6 C -0.084 4.084 7 C -0.167 4.167 8 C 0.115 3.885 9 C -0.463 4.463 10 H 0.077 0.923 11 C 0.077 3.923 12 N -0.788 5.788 13 Si 0.907 3.093 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.265 1.265 17 C -0.230 4.230 18 C -0.075 4.075 19 C 0.246 3.754 20 C -0.189 4.189 21 C -0.060 4.060 22 C -0.183 4.183 23 C 0.015 3.985 24 Cl -0.087 7.087 25 C -0.201 4.201 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.282 0.718 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 1.063 5.485 12.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.007 4.007 3 N -0.317 5.317 4 C 0.062 3.938 5 C -0.242 4.242 6 C -0.103 4.103 7 C -0.186 4.186 8 C 0.113 3.887 9 C -0.492 4.492 10 H 0.095 0.905 11 C -0.142 4.142 12 N -0.413 5.413 13 Si 0.732 3.268 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.190 1.190 17 C -0.249 4.249 18 C -0.094 4.094 19 C 0.141 3.859 20 C -0.212 4.212 21 C -0.079 4.079 22 C -0.204 4.204 23 C -0.012 4.012 24 Cl -0.059 7.059 25 C -0.225 4.225 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.640 0.966 5.630 12.966 hybrid contribution 0.974 -0.175 -0.070 0.992 sum -10.666 0.791 5.560 12.054 Atomic orbital electron populations 1.22228 0.96766 1.01590 1.02229 1.21355 0.93267 0.83179 1.02888 1.47036 1.68993 1.12742 1.02947 1.20130 0.94357 0.96002 0.83323 1.19335 0.94108 1.01581 1.09215 1.20590 0.93481 0.97630 0.98605 1.21302 0.94563 0.99183 1.03560 1.17622 0.92534 0.89345 0.89246 1.19598 0.90482 1.30205 1.08909 0.90491 1.25919 1.01476 0.92810 0.93978 1.69821 1.34447 1.30259 1.06770 0.86380 0.80817 0.79733 0.79899 1.18769 1.20266 1.18986 1.20939 0.93347 1.01360 1.09285 1.20312 0.95414 0.95879 0.97816 1.17644 0.91504 0.91115 0.85617 1.20929 1.06827 0.94388 0.99037 1.20792 0.96586 0.99268 0.91262 1.20654 1.07239 0.93803 0.98726 1.20520 1.01554 0.93268 0.85821 1.98337 1.94801 1.79667 1.33050 1.20409 1.11321 1.01027 0.89708 0.92568 0.92094 0.92548 0.90524 0.91134 0.91623 0.91476 0.89389 0.86547 0.90711 0.89200 0.89895 0.85113 0.85612 0.85957 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 10.24 37.16 0.38 -1.44 16 2 C 0.12 1.54 5.88 -4.04 -0.02 1.52 16 3 N -0.61 -9.36 2.59 -173.12 -0.45 -9.81 16 4 C 0.18 2.92 5.35 -5.19 -0.03 2.89 16 5 C -0.24 -4.83 5.49 -104.33 -0.57 -5.41 16 6 C -0.08 -1.87 9.30 -39.66 -0.37 -2.24 16 7 C -0.17 -4.23 8.70 -38.87 -0.34 -4.56 16 8 C 0.12 3.01 5.57 -106.83 -0.60 2.41 16 9 C -0.46 -12.13 9.05 -37.74 -0.34 -12.47 16 10 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 11 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 12 N -0.79 -20.28 10.95 55.55 0.61 -19.67 16 13 Si 0.91 18.45 29.60 -169.99 -5.03 13.42 16 14 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 15 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 17 C -0.23 -5.49 9.80 -38.87 -0.38 -5.87 16 18 C -0.08 -1.59 9.67 -39.66 -0.38 -1.97 16 19 C 0.25 3.91 6.55 -83.80 -0.55 3.36 16 20 C -0.19 -2.93 8.47 -39.38 -0.33 -3.26 16 21 C -0.06 -0.84 10.04 -39.62 -0.40 -1.24 16 22 C -0.18 -2.55 9.83 -39.51 -0.39 -2.94 16 23 C 0.02 0.22 6.32 -39.53 -0.25 -0.02 16 24 Cl -0.09 -1.14 28.95 -51.86 -1.50 -2.64 16 25 C -0.20 -3.03 8.99 -39.35 -0.35 -3.38 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 30 H 0.07 0.93 6.20 -51.93 -0.32 0.61 16 31 H 0.07 0.95 8.01 -51.93 -0.42 0.53 16 32 H 0.07 1.01 6.14 -51.93 -0.32 0.69 16 33 H 0.09 1.77 5.79 -52.49 -0.30 1.47 16 34 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 35 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 36 H 0.09 2.04 8.06 -52.48 -0.42 1.62 16 37 H 0.08 1.53 8.05 -52.48 -0.42 1.10 16 38 H 0.13 2.00 4.33 -52.49 -0.23 1.78 16 39 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.13 1.78 6.14 -52.49 -0.32 1.46 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -26.86 351.48 -11.25 -38.11 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.16 Total: 8.10 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -5.01 Total: -32.81 kcal Atomic # 7 Polarization: -29.64 SS G_CDS: 0.16 Total: -29.48 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -26.86 -11.25 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652727195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.403 kcal (2) G-P(sol) polarization free energy of solvation -26.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds