Wall clock time and date at job start Tue Mar 31 2020 11:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46450 * 2 1 4 4 C 1.46502 * 119.99901 * 269.99630 * 3 2 1 5 5 C 1.50705 * 109.47170 * 270.00476 * 4 3 2 6 6 C 1.38634 * 119.74821 * 269.72976 * 5 4 3 7 7 C 1.37621 * 120.24688 * 179.72286 * 6 5 4 8 8 C 1.40714 * 119.74091 * 0.56882 * 7 6 5 9 9 C 1.41397 * 120.24030 * 179.68687 * 8 7 6 10 10 H 1.08000 * 119.99636 * 204.40763 * 9 8 7 11 11 C 1.39945 * 120.00160 * 24.39937 * 9 8 7 12 12 N 1.30819 * 119.99922 * 17.85268 * 11 9 8 13 13 Si 1.86804 * 119.99894 * 197.84937 * 11 9 8 14 14 H 1.48497 * 109.47223 * 60.00192 * 13 11 9 15 15 H 1.48500 * 109.46992 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47100 * 300.00038 * 13 11 9 17 17 C 1.40709 * 119.51711 * 359.70339 * 8 7 6 18 18 C 1.37622 * 119.74204 * 0.02562 * 17 8 7 19 19 C 1.39674 * 120.00129 * 90.00058 * 3 2 1 20 20 C 1.38939 * 120.06366 * 179.71894 * 19 3 2 21 21 C 1.38092 * 119.94585 * 180.23212 * 20 19 3 22 22 C 1.38290 * 120.08798 * 0.06780 * 21 20 19 23 23 C 1.38379 * 120.13450 * 359.95616 * 22 21 20 24 24 Cl 1.73608 * 119.97118 * 180.02562 * 23 22 21 25 25 C 1.38239 * 120.05117 * 0.02562 * 23 22 21 26 26 H 1.08999 * 109.47392 * 60.00109 * 1 2 3 27 27 H 1.09004 * 109.46533 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47501 * 299.99722 * 1 2 3 29 29 H 1.08996 * 109.47501 * 240.00277 * 2 1 3 30 30 H 1.08998 * 109.46998 * 119.99226 * 2 1 3 31 31 H 1.08997 * 109.47041 * 30.00276 * 4 3 2 32 32 H 1.09002 * 109.47061 * 150.00318 * 4 3 2 33 33 H 1.07996 * 119.87547 * 359.97330 * 6 5 4 34 34 H 1.08000 * 120.12637 * 180.27366 * 7 6 5 35 35 H 0.97005 * 120.00206 * 179.97438 * 12 11 9 36 36 H 1.08004 * 120.13444 * 179.97438 * 17 8 7 37 37 H 1.08003 * 119.87392 * 180.02562 * 18 17 8 38 38 H 1.07993 * 120.02903 * 0.25321 * 20 19 3 39 39 H 1.08005 * 119.95516 * 180.02562 * 21 20 19 40 40 H 1.07998 * 119.92882 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.04127 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7038 6 6 4.6819 2.7131 -1.3052 7 6 5.9860 2.5035 -1.6918 8 6 6.3044 1.3999 -2.5046 9 6 7.6397 1.1782 -2.9134 10 1 7.8428 0.6129 -3.8110 11 6 8.6980 1.6915 -2.1552 12 7 8.4961 2.0621 -0.9169 13 14 10.3991 1.8474 -2.9112 14 1 10.3355 2.7453 -4.0923 15 1 11.3365 2.4137 -1.9083 16 1 10.8777 0.5067 -3.3339 17 6 5.2842 0.5186 -2.9078 18 6 3.9879 0.7446 -2.5046 19 6 2.2510 2.0398 1.2096 20 6 2.7195 3.3478 1.2111 21 6 2.9533 3.9949 2.4084 22 6 2.7231 3.3422 3.6057 23 6 2.2569 2.0393 3.6083 24 17 1.9687 1.2243 5.1138 25 6 2.0206 1.3863 2.4130 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0953 3.1412 -1.1384 33 1 4.4343 3.5623 -0.6857 34 1 6.7612 3.1862 -1.3765 35 1 9.2297 2.4175 -0.3912 36 1 5.5173 -0.3314 -3.5320 37 1 3.2033 0.0693 -2.8125 38 1 2.9004 3.8582 0.2767 39 1 3.3172 5.0118 2.4098 40 1 2.9072 3.8506 4.5406 41 1 1.6564 0.3696 2.4151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652727195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:36 Heat of formation + Delta-G solvation = 26.765478 kcal Electronic energy + Delta-G solvation = -23246.307794 eV Core-core repulsion = 19922.736261 eV Total energy + Delta-G solvation = -3323.571533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79876 -39.36745 -37.84315 -36.96343 -35.57611 -33.13405 -31.97675 -31.42209 -31.15209 -29.86875 -27.85397 -25.56961 -24.30475 -23.16909 -22.83792 -22.11295 -21.02318 -19.22286 -18.69409 -17.17236 -17.00082 -16.62732 -16.24564 -15.96103 -15.70746 -15.31995 -15.23905 -14.79558 -14.66763 -14.26030 -14.07897 -13.82101 -13.73517 -13.44524 -13.15159 -12.95081 -12.75552 -12.66758 -12.57266 -12.45043 -12.32785 -12.13753 -12.12555 -11.84469 -11.71238 -11.55373 -11.19465 -10.97880 -10.63560 -9.68288 -9.33193 -9.22391 -8.64259 -8.16308 -6.33946 0.34650 0.63319 0.93203 1.17243 1.19635 1.36185 1.46889 1.50966 2.19073 2.33095 2.79670 2.87253 3.76811 3.92777 4.01188 4.17121 4.26563 4.31263 4.36968 4.48380 4.49372 4.57979 4.61590 4.63767 4.68472 4.83657 4.91039 4.97924 5.01744 5.07236 5.15302 5.29792 5.35070 5.38584 5.44307 5.48152 5.59382 5.71610 5.82297 5.98409 6.11277 6.22743 6.40510 6.44882 6.62716 6.72372 6.94815 7.05500 8.32086 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.003693 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.832599 B = 7579.956651 C = 8714.289827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.112 3.888 3 N -0.615 5.615 4 C 0.188 3.812 5 C -0.221 4.221 6 C -0.087 4.087 7 C -0.193 4.193 8 C 0.081 3.919 9 C -0.505 4.505 10 H 0.073 0.927 11 C 0.037 3.963 12 N -0.825 5.825 13 Si 0.979 3.021 14 H -0.260 1.260 15 H -0.268 1.268 16 H -0.260 1.260 17 C -0.247 4.247 18 C -0.075 4.075 19 C 0.229 3.771 20 C -0.206 4.206 21 C -0.062 4.062 22 C -0.186 4.186 23 C 0.005 3.995 24 Cl -0.076 7.076 25 C -0.208 4.208 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.287 0.713 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.179 1.105 5.920 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.011 4.011 3 N -0.322 5.322 4 C 0.066 3.934 5 C -0.223 4.223 6 C -0.106 4.106 7 C -0.213 4.213 8 C 0.079 3.921 9 C -0.535 4.535 10 H 0.091 0.909 11 C -0.178 4.178 12 N -0.451 5.451 13 Si 0.800 3.200 14 H -0.184 1.184 15 H -0.192 1.192 16 H -0.184 1.184 17 C -0.267 4.267 18 C -0.094 4.094 19 C 0.125 3.875 20 C -0.228 4.228 21 C -0.081 4.081 22 C -0.207 4.207 23 C -0.022 4.022 24 Cl -0.047 7.047 25 C -0.231 4.231 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.135 0.865 38 H 0.147 0.853 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.154 0.997 6.077 14.524 hybrid contribution 1.237 -0.199 -0.100 1.257 sum -11.917 0.798 5.977 13.356 Atomic orbital electron populations 1.22117 0.94635 1.02783 1.02122 1.21502 0.94953 0.81977 1.02633 1.46968 1.69359 1.13481 1.02404 1.20099 0.91711 0.97250 0.84340 1.19847 0.96076 0.99699 1.06682 1.20855 0.92770 0.98625 0.98363 1.21266 0.95578 0.99368 1.05047 1.17955 0.93401 0.90340 0.90420 1.19837 0.91613 1.32340 1.09681 0.90907 1.26723 1.05140 0.91903 0.94044 1.69885 1.35822 1.31420 1.07953 0.85305 0.75869 0.79810 0.79056 1.18402 1.19203 1.18445 1.21156 0.94385 1.01346 1.09799 1.20672 0.95112 0.96519 0.97095 1.17835 0.92118 0.91516 0.86049 1.21071 1.07554 0.94622 0.99590 1.21103 0.95858 1.00316 0.90825 1.20944 1.06459 0.93690 0.99562 1.20706 1.01505 0.93721 0.86273 1.98338 1.94714 1.79488 1.32186 1.20537 1.11433 1.01428 0.89751 0.92208 0.90252 0.93044 0.90734 0.91456 0.89181 0.90303 0.87598 0.88662 0.90250 0.89004 0.86518 0.85287 0.83354 0.84133 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 10.24 71.98 0.74 -2.20 16 2 C 0.11 2.70 5.88 86.38 0.51 3.21 16 3 N -0.61 -17.50 2.59 -701.62 -1.82 -19.32 16 4 C 0.19 5.49 5.35 85.63 0.46 5.95 16 5 C -0.22 -8.56 5.49 -19.67 -0.11 -8.67 16 6 C -0.09 -3.87 9.30 22.22 0.21 -3.67 16 7 C -0.19 -10.13 8.70 22.73 0.20 -9.93 16 8 C 0.08 4.40 5.57 -21.29 -0.12 4.28 16 9 C -0.51 -27.68 9.05 23.46 0.21 -27.47 16 10 H 0.07 3.85 7.91 -2.91 -0.02 3.83 16 11 C 0.04 1.88 5.14 85.26 0.44 2.32 16 12 N -0.82 -44.06 10.95 21.83 0.24 -43.82 16 13 Si 0.98 38.72 29.60 68.60 2.03 40.75 16 14 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 15 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 16 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 17 C -0.25 -11.98 9.80 22.73 0.22 -11.76 16 18 C -0.08 -3.08 9.67 22.22 0.21 -2.87 16 19 C 0.23 6.90 6.55 38.21 0.25 7.15 16 20 C -0.21 -6.06 8.47 22.40 0.19 -5.87 16 21 C -0.06 -1.63 10.04 22.25 0.22 -1.40 16 22 C -0.19 -4.81 9.83 22.32 0.22 -4.59 16 23 C 0.01 0.14 6.32 22.30 0.14 0.28 16 24 Cl -0.08 -1.86 28.95 -2.72 -0.08 -1.94 16 25 C -0.21 -5.96 8.99 22.42 0.20 -5.76 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.82 8.07 -2.39 -0.02 1.80 16 30 H 0.07 1.65 6.20 -2.39 -0.01 1.64 16 31 H 0.09 2.24 8.01 -2.39 -0.02 2.22 16 32 H 0.08 2.16 6.14 -2.39 -0.01 2.14 16 33 H 0.11 4.21 5.79 -2.91 -0.02 4.20 16 34 H 0.10 5.31 6.16 -2.91 -0.02 5.30 16 35 H 0.29 13.94 8.30 -92.70 -0.77 13.17 16 36 H 0.09 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.12 3.95 8.05 -2.91 -0.02 3.92 16 38 H 0.13 3.75 4.33 -2.91 -0.01 3.74 16 39 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 40 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 41 H 0.13 3.55 6.14 -2.91 -0.02 3.53 16 Total: -1.00 -59.75 351.48 5.61 -54.14 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 1.04 Total: 31.16 kcal Atomic # 6 Polarization: -65.17 SS G_CDS: 4.19 Total: -60.98 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -1.58 Total: -63.14 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.94 kcal Total: -59.75 5.61 -54.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652727195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.909 kcal (2) G-P(sol) polarization free energy of solvation -59.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds