Wall clock time and date at job start Tue Mar 31 2020 11:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86794 * 119.99915 * 2 1 4 4 H 1.48498 * 109.47318 * 240.00240 * 3 2 1 5 5 H 1.48499 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47316 * 120.00123 * 3 2 1 7 7 C 1.39899 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99854 * 190.64050 * 7 2 1 9 9 C 1.41151 * 120.00473 * 10.36886 * 7 2 1 10 10 C 1.40868 * 120.16379 * 28.91669 * 9 7 2 11 11 C 1.36372 * 119.83240 * 179.71956 * 10 9 7 12 12 C 1.39490 * 120.16590 * 0.53937 * 11 10 9 13 13 N 1.39232 * 119.83432 * 179.73557 * 12 11 10 14 14 C 1.34774 * 120.00159 * 326.16996 * 13 12 11 15 15 O 1.21278 * 120.00026 * 355.53530 * 14 13 12 16 16 C 1.50699 * 119.99970 * 175.53933 * 14 13 12 17 17 H 1.08997 * 109.64197 * 23.15327 * 16 14 13 18 18 C 1.53024 * 109.64277 * 143.79342 * 16 14 13 19 19 C 1.50065 * 110.14750 * 70.24595 * 18 16 14 20 20 C 1.29450 * 124.07583 * 17.13499 * 19 18 16 21 21 C 1.50066 * 124.07350 * 359.52827 * 20 19 18 22 22 C 1.53022 * 110.14628 * 17.13246 * 21 20 19 23 23 H 1.08999 * 109.64319 * 70.25394 * 22 21 20 24 24 C 1.50706 * 109.63872 * 190.88214 * 22 21 20 25 25 O 1.20822 * 120.00240 * 118.94979 * 24 22 21 26 26 O 1.34228 * 119.99584 * 298.93863 * 24 22 21 27 27 C 1.39481 * 120.33097 * 359.75555 * 12 11 10 28 28 C 1.36381 * 120.16800 * 359.96126 * 27 12 11 29 29 H 0.96996 * 119.99961 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.08464 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.92170 * 180.27735 * 11 10 9 32 32 H 0.97005 * 120.00122 * 146.16275 * 13 12 11 33 33 H 1.08997 * 109.35753 * 190.45151 * 18 16 14 34 34 H 1.08995 * 109.35869 * 310.03788 * 18 16 14 35 35 H 1.07999 * 117.96554 * 197.15062 * 19 18 16 36 36 H 1.07999 * 117.95893 * 179.50616 * 20 19 18 37 37 H 1.09003 * 109.35647 * 256.92724 * 21 20 19 38 38 H 1.09001 * 109.35813 * 137.34447 * 21 20 19 39 39 H 0.96708 * 117.00019 * 179.97438 * 26 24 22 40 40 H 1.07997 * 119.91665 * 179.97438 * 27 12 11 41 41 H 1.07999 * 120.08246 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0965 1.6964 1.2124 7 6 2.0082 -1.2116 -0.0005 8 1 3.0743 -1.2197 0.1722 9 6 1.3198 -2.4239 -0.2211 10 6 0.1507 -2.4412 -1.0067 11 6 -0.5059 -3.6173 -1.2201 12 6 -0.0288 -4.7993 -0.6535 13 7 -0.7077 -5.9952 -0.8714 14 6 -2.0503 -5.9963 -0.9883 15 8 -2.6742 -4.9695 -0.8234 16 6 -2.7764 -7.2735 -1.3239 17 1 -2.1639 -8.1289 -1.0389 18 6 -4.1106 -7.3185 -0.5759 19 6 -5.0583 -6.3053 -1.1479 20 6 -4.9095 -5.7454 -2.3055 21 6 -3.7630 -6.0238 -3.2329 22 6 -3.0628 -7.3234 -2.8300 23 1 -3.7096 -8.1722 -3.0522 24 6 -1.7670 -7.4565 -3.5879 25 8 -0.7190 -7.5069 -2.9886 26 8 -1.7771 -7.5194 -4.9287 27 6 1.1247 -4.7891 0.1306 28 6 1.7952 -3.6216 0.3481 29 1 -0.4850 0.8400 0.0004 30 1 -0.2225 -1.5261 -1.4422 31 1 -1.3998 -3.6329 -1.8258 32 1 -0.2143 -6.8276 -0.9392 33 1 -4.5448 -8.3137 -0.6713 34 1 -3.9412 -7.1000 0.4784 35 1 -5.9179 -6.0257 -0.5569 36 1 -5.6571 -5.0340 -2.6237 37 1 -3.0510 -5.1998 -3.1847 38 1 -4.1372 -6.1160 -4.2525 39 1 -0.9212 -7.6042 -5.3707 40 1 1.4879 -5.7080 0.5664 41 1 2.6885 -3.6153 0.9551 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013468450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:58 Heat of formation + Delta-G solvation = -89.053437 kcal Electronic energy + Delta-G solvation = -26511.075112 eV Core-core repulsion = 22741.772130 eV Total energy + Delta-G solvation = -3769.302983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.17033 -39.52609 -37.92777 -36.48572 -36.22862 -34.23268 -32.84592 -31.60569 -31.12688 -29.43037 -28.81751 -25.49436 -24.61189 -23.58260 -21.75155 -21.19672 -20.62496 -19.52191 -18.17365 -18.12394 -17.25699 -17.19528 -16.20150 -16.04967 -15.72265 -15.28240 -15.03679 -14.55759 -13.93069 -13.85590 -13.47134 -13.30939 -13.03927 -12.87455 -12.68784 -12.42411 -12.33159 -12.04827 -11.85316 -11.69064 -11.58014 -11.39483 -11.07671 -11.02729 -10.90988 -10.68779 -10.44622 -10.27894 -9.83184 -9.74741 -9.35307 -9.07722 -8.71755 -8.52093 -7.45133 -6.84045 -6.61295 -4.23590 2.08200 2.47590 2.63701 2.85727 3.06651 3.11081 3.14198 3.16339 3.46157 3.84770 4.00070 4.38887 4.60569 4.66725 4.76053 5.06720 5.12644 5.19973 5.25128 5.35346 5.49611 5.66552 5.70617 5.76857 5.84273 5.97667 6.10640 6.23626 6.37494 6.45166 6.69924 6.91840 7.07270 7.08844 7.12738 7.25645 7.38210 7.67362 7.73909 7.80612 8.06601 8.12383 8.31402 8.46469 8.70802 8.93269 8.96736 9.11336 10.31510 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.003629 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.700921 B = 7714.053085 C = 8078.607013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.463 4.463 8 H 0.075 0.925 9 C 0.103 3.897 10 C -0.148 4.148 11 C -0.090 4.090 12 C 0.010 3.990 13 N -0.638 5.638 14 C 0.499 3.501 15 O -0.519 6.519 16 C -0.096 4.096 17 H 0.096 0.904 18 C -0.069 4.069 19 C -0.142 4.142 20 C -0.137 4.137 21 C -0.081 4.081 22 C -0.066 4.066 23 H 0.119 0.881 24 C 0.479 3.521 25 O -0.501 6.501 26 O -0.515 6.515 27 C -0.111 4.111 28 C -0.210 4.210 29 H 0.279 0.721 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.400 0.600 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.411 0.589 40 H 0.089 0.911 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.050 -14.990 -6.912 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.100 3.900 10 C -0.168 4.168 11 C -0.110 4.110 12 C -0.083 4.083 13 N -0.281 5.281 14 C 0.285 3.715 15 O -0.395 6.395 16 C -0.117 4.117 17 H 0.114 0.886 18 C -0.107 4.107 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.118 4.118 22 C -0.085 4.085 23 H 0.137 0.863 24 C 0.321 3.679 25 O -0.387 6.387 26 O -0.327 6.327 27 C -0.131 4.131 28 C -0.230 4.230 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.117 0.883 32 H 0.235 0.765 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.269 0.731 40 H 0.107 0.893 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.802 -14.069 -6.431 17.798 hybrid contribution 1.228 0.341 -0.177 1.286 sum -7.574 -13.728 -6.608 17.015 Atomic orbital electron populations 1.69825 1.07351 1.29017 1.36441 1.25892 0.94819 1.01137 0.92599 0.86334 0.79950 0.80375 0.79786 1.18973 1.20407 1.19127 1.19473 0.95762 0.90579 1.43480 0.90651 1.17652 0.91653 0.92054 0.88622 1.21042 0.98201 0.96370 1.01160 1.20412 0.98926 0.92116 0.99588 1.17245 0.97688 0.85604 1.07751 1.43104 1.06017 1.09563 1.69455 1.20126 0.82619 0.90015 0.78778 1.90735 1.66412 1.33453 1.48932 1.21297 0.98236 0.98560 0.93648 0.88554 1.20284 0.91751 0.98679 0.99953 1.21725 0.99394 0.98959 0.95968 1.21634 0.97754 1.00005 0.96123 1.20420 0.97034 0.95144 0.99183 1.20986 0.92275 1.02431 0.92855 0.86304 1.23387 0.91785 0.71988 0.80758 1.90686 1.33739 1.44923 1.69393 1.84505 1.41333 1.85169 1.21716 1.20060 0.96577 0.97208 0.99261 1.20596 1.02920 0.93109 1.06374 0.90958 0.86083 0.88290 0.76504 0.90154 0.90015 0.87775 0.87616 0.89683 0.89944 0.73060 0.89295 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.76 10.82 55.55 0.60 -21.16 16 2 C 0.07 1.88 5.26 -17.34 -0.09 1.79 16 3 Si 0.91 19.33 29.57 -169.99 -5.03 14.30 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.66 9.05 -37.86 -0.34 -13.00 16 8 H 0.08 1.96 7.87 -52.48 -0.41 1.55 16 9 C 0.10 2.84 5.55 -106.80 -0.59 2.25 16 10 C -0.15 -4.08 8.60 -39.26 -0.34 -4.42 16 11 C -0.09 -2.32 8.57 -39.79 -0.34 -2.67 16 12 C 0.01 0.23 6.29 -83.57 -0.53 -0.30 16 13 N -0.64 -12.25 4.32 -9.74 -0.04 -12.29 16 14 C 0.50 8.97 5.13 -10.99 -0.06 8.91 16 15 O -0.52 -11.20 11.18 5.56 0.06 -11.13 16 16 C -0.10 -1.20 2.21 -91.56 -0.20 -1.41 16 17 H 0.10 1.05 7.84 -51.93 -0.41 0.64 16 18 C -0.07 -0.77 5.44 -28.18 -0.15 -0.92 16 19 C -0.14 -1.73 8.77 -35.90 -0.31 -2.05 16 20 C -0.14 -1.72 8.85 -35.90 -0.32 -2.03 16 21 C -0.08 -1.00 4.74 -28.18 -0.13 -1.13 16 22 C -0.07 -0.73 2.48 -91.55 -0.23 -0.95 16 23 H 0.12 0.95 8.12 -51.93 -0.42 0.53 16 24 C 0.48 5.73 7.37 36.01 0.27 5.99 16 25 O -0.50 -7.30 13.78 -18.75 -0.26 -7.56 16 26 O -0.52 -4.83 13.37 -39.25 -0.52 -5.35 16 27 C -0.11 -2.58 9.89 -39.79 -0.39 -2.97 16 28 C -0.21 -5.31 9.74 -39.26 -0.38 -5.69 16 29 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 30 H 0.12 3.47 6.20 -52.48 -0.33 3.14 16 31 H 0.10 2.53 6.40 -52.49 -0.34 2.19 16 32 H 0.40 6.80 7.30 -40.82 -0.30 6.50 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 35 H 0.10 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.08 1.35 6.92 -51.93 -0.36 0.99 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.41 2.32 9.10 45.56 0.41 2.74 16 40 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -33.09 336.99 -8.50 -41.59 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -4.24 Total: 15.12 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -4.15 Total: -18.59 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.56 Total: -33.45 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.72 Total: -24.04 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.09 -8.50 -41.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013468450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.466 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds