Wall clock time and date at job start Tue Mar 31 2020 11:08:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30878 * 1
3 3 Si 1.86794 * 119.99915 * 2 1
4 4 H 1.48498 * 109.47318 * 240.00240 * 3 2 1
5 5 H 1.48499 * 109.47175 * 0.02562 * 3 2 1
6 6 H 1.48493 * 109.47316 * 120.00123 * 3 2 1
7 7 C 1.39899 * 119.99774 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99854 * 190.64050 * 7 2 1
9 9 C 1.41151 * 120.00473 * 10.36886 * 7 2 1
10 10 C 1.40868 * 120.16379 * 28.91669 * 9 7 2
11 11 C 1.36372 * 119.83240 * 179.71956 * 10 9 7
12 12 C 1.39490 * 120.16590 * 0.53937 * 11 10 9
13 13 N 1.39232 * 119.83432 * 179.73557 * 12 11 10
14 14 C 1.34774 * 120.00159 * 326.16996 * 13 12 11
15 15 O 1.21278 * 120.00026 * 355.53530 * 14 13 12
16 16 C 1.50699 * 119.99970 * 175.53933 * 14 13 12
17 17 H 1.08997 * 109.64197 * 23.15327 * 16 14 13
18 18 C 1.53024 * 109.64277 * 143.79342 * 16 14 13
19 19 C 1.50065 * 110.14750 * 70.24595 * 18 16 14
20 20 C 1.29450 * 124.07583 * 17.13499 * 19 18 16
21 21 C 1.50066 * 124.07350 * 359.52827 * 20 19 18
22 22 C 1.53022 * 110.14628 * 17.13246 * 21 20 19
23 23 H 1.08999 * 109.64319 * 70.25394 * 22 21 20
24 24 C 1.50706 * 109.63872 * 190.88214 * 22 21 20
25 25 O 1.20822 * 120.00240 * 118.94979 * 24 22 21
26 26 O 1.34228 * 119.99584 * 298.93863 * 24 22 21
27 27 C 1.39481 * 120.33097 * 359.75555 * 12 11 10
28 28 C 1.36381 * 120.16800 * 359.96126 * 27 12 11
29 29 H 0.96996 * 119.99961 * 359.97438 * 1 2 3
30 30 H 1.08003 * 120.08464 * 359.97438 * 10 9 7
31 31 H 1.07994 * 119.92170 * 180.27735 * 11 10 9
32 32 H 0.97005 * 120.00122 * 146.16275 * 13 12 11
33 33 H 1.08997 * 109.35753 * 190.45151 * 18 16 14
34 34 H 1.08995 * 109.35869 * 310.03788 * 18 16 14
35 35 H 1.07999 * 117.96554 * 197.15062 * 19 18 16
36 36 H 1.07999 * 117.95893 * 179.50616 * 20 19 18
37 37 H 1.09003 * 109.35647 * 256.92724 * 21 20 19
38 38 H 1.09001 * 109.35813 * 137.34447 * 21 20 19
39 39 H 0.96708 * 117.00019 * 179.97438 * 26 24 22
40 40 H 1.07997 * 119.91665 * 179.97438 * 27 12 11
41 41 H 1.07999 * 120.08246 * 180.02562 * 28 27 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3088 0.0000 0.0000
3 14 2.2427 1.6177 0.0000
4 1 3.0964 1.6964 -1.2125
5 1 1.2777 2.7464 0.0006
6 1 3.0965 1.6964 1.2124
7 6 2.0082 -1.2116 -0.0005
8 1 3.0743 -1.2197 0.1722
9 6 1.3198 -2.4239 -0.2211
10 6 0.1507 -2.4412 -1.0067
11 6 -0.5059 -3.6173 -1.2201
12 6 -0.0288 -4.7993 -0.6535
13 7 -0.7077 -5.9952 -0.8714
14 6 -2.0503 -5.9963 -0.9883
15 8 -2.6742 -4.9695 -0.8234
16 6 -2.7764 -7.2735 -1.3239
17 1 -2.1639 -8.1289 -1.0389
18 6 -4.1106 -7.3185 -0.5759
19 6 -5.0583 -6.3053 -1.1479
20 6 -4.9095 -5.7454 -2.3055
21 6 -3.7630 -6.0238 -3.2329
22 6 -3.0628 -7.3234 -2.8300
23 1 -3.7096 -8.1722 -3.0522
24 6 -1.7670 -7.4565 -3.5879
25 8 -0.7190 -7.5069 -2.9886
26 8 -1.7771 -7.5194 -4.9287
27 6 1.1247 -4.7891 0.1306
28 6 1.7952 -3.6216 0.3481
29 1 -0.4850 0.8400 0.0004
30 1 -0.2225 -1.5261 -1.4422
31 1 -1.3998 -3.6329 -1.8258
32 1 -0.2143 -6.8276 -0.9392
33 1 -4.5448 -8.3137 -0.6713
34 1 -3.9412 -7.1000 0.4784
35 1 -5.9179 -6.0257 -0.5569
36 1 -5.6571 -5.0340 -2.6237
37 1 -3.0510 -5.1998 -3.1847
38 1 -4.1372 -6.1160 -4.2525
39 1 -0.9212 -7.6042 -5.3707
40 1 1.4879 -5.7080 0.5664
41 1 2.6885 -3.6153 0.9551
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000013468450.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:08:55
Heat of formation + Delta-G solvation = -110.001194 kcal
Electronic energy + Delta-G solvation = -26511.983475 eV
Core-core repulsion = 22741.772130 eV
Total energy + Delta-G solvation = -3770.211346 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 1.91 seconds
Orbital eigenvalues (eV)
-42.26862 -40.75627 -39.50332 -37.94517 -37.11193 -36.01906 -34.64897 -32.61386
-32.14363 -31.41513 -30.67777 -27.15319 -25.73354 -24.79918 -23.27991 -22.89474
-22.06483 -20.91964 -19.43295 -19.19796 -19.06018 -18.35313 -17.64484 -17.36840
-16.87932 -16.75116 -16.26556 -15.84375 -15.68591 -15.22560 -14.86587 -14.64768
-14.39326 -14.17398 -14.01958 -13.86974 -13.58380 -13.54380 -13.30156 -13.23042
-12.92984 -12.79149 -12.67992 -12.47962 -12.32359 -11.97902 -11.72929 -11.71450
-11.58217 -11.21854 -11.17739 -10.66036 -10.38569 -9.69323 -9.46142 -8.77515
-8.56070 -6.28985 0.81596 1.11312 1.17550 1.36903 1.45087 1.50170
1.54414 1.86533 2.07613 2.21520 2.45803 2.79157 3.42855 3.60371
3.71679 3.72684 4.12530 4.17818 4.26300 4.35610 4.40989 4.42685
4.44307 4.57826 4.77798 4.84801 4.93766 4.95837 5.05022 5.09954
5.19200 5.20341 5.31243 5.46651 5.60896 5.67547 5.76928 5.88106
6.07962 6.13322 6.15582 6.34410 6.67487 6.82599 6.93411 6.97663
7.02360 7.53197 8.38535
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.018918 B = 0.003629 C = 0.003465
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1479.700921 B = 7714.053085 C = 8078.607013
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.840 5.840
2 C 0.027 3.973
3 Si 0.988 3.012
4 H -0.258 1.258
5 H -0.271 1.271
6 H -0.257 1.257
7 C -0.498 4.498
8 H 0.080 0.920
9 C 0.070 3.930
10 C -0.171 4.171
11 C -0.102 4.102
12 C 0.022 3.978
13 N -0.636 5.636
14 C 0.496 3.504
15 O -0.559 6.559
16 C -0.088 4.088
17 H 0.122 0.878
18 C -0.069 4.069
19 C -0.147 4.147
20 C -0.156 4.156
21 C -0.077 4.077
22 C -0.062 4.062
23 H 0.164 0.836
24 C 0.480 3.520
25 O -0.533 6.533
26 O -0.509 6.509
27 C -0.111 4.111
28 C -0.217 4.217
29 H 0.285 0.715
30 H 0.098 0.902
31 H 0.090 0.910
32 H 0.413 0.587
33 H 0.126 0.874
34 H 0.072 0.928
35 H 0.110 0.890
36 H 0.106 0.894
37 H 0.040 0.960
38 H 0.103 0.897
39 H 0.427 0.573
40 H 0.128 0.872
41 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.237 -17.324 -7.002 20.420
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.467 5.467
2 C -0.186 4.186
3 Si 0.809 3.191
4 H -0.183 1.183
5 H -0.195 1.195
6 H -0.181 1.181
7 C -0.528 4.528
8 H 0.098 0.902
9 C 0.067 3.933
10 C -0.191 4.191
11 C -0.122 4.122
12 C -0.072 4.072
13 N -0.282 5.282
14 C 0.284 3.716
15 O -0.437 6.437
16 C -0.109 4.109
17 H 0.141 0.859
18 C -0.106 4.106
19 C -0.165 4.165
20 C -0.174 4.174
21 C -0.115 4.115
22 C -0.081 4.081
23 H 0.181 0.819
24 C 0.323 3.677
25 O -0.422 6.422
26 O -0.322 6.322
27 C -0.131 4.131
28 C -0.237 4.237
29 H 0.095 0.905
30 H 0.116 0.884
31 H 0.108 0.892
32 H 0.251 0.749
33 H 0.144 0.856
34 H 0.091 0.909
35 H 0.128 0.872
36 H 0.124 0.876
37 H 0.059 0.941
38 H 0.121 0.879
39 H 0.288 0.712
40 H 0.146 0.854
41 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -8.992 -16.458 -6.549 19.864
hybrid contribution 1.188 0.932 -0.204 1.524
sum -7.804 -15.526 -6.753 18.643
Atomic orbital electron populations
1.69926 1.09115 1.30230 1.37404 1.26844 0.95558 1.04765 0.91406
0.85165 0.78519 0.75300 0.80146 1.18273 1.19542 1.18124 1.19771
0.96168 0.91564 1.45275 0.90182 1.17989 0.92199 0.93513 0.89582
1.20938 0.99335 0.96276 1.02544 1.20417 0.98754 0.92830 1.00179
1.17363 0.97511 0.86492 1.05838 1.43141 1.06742 1.08510 1.69766
1.21196 0.81985 0.91605 0.76815 1.90725 1.67077 1.35730 1.50139
1.21355 0.98627 0.95777 0.95139 0.85950 1.20406 0.90632 1.00674
0.98870 1.21991 0.99850 0.98998 0.95633 1.21744 0.98142 1.00650
0.96827 1.20349 0.96094 0.94418 1.00590 1.21078 0.92444 1.03129
0.91432 0.81914 1.23559 0.91609 0.71120 0.81383 1.90668 1.34796
1.46619 1.70111 1.84465 1.42687 1.84465 1.20581 1.20412 0.95986
0.98110 0.98576 1.20864 1.03531 0.93100 1.06200 0.90507 0.88366
0.89150 0.74880 0.85625 0.90924 0.87154 0.87594 0.94108 0.87879
0.71154 0.85414 0.87219
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -47.68 10.82 21.82 0.24 -47.44 16
2 C 0.03 1.44 5.26 85.24 0.45 1.89 16
3 Si 0.99 40.29 29.57 68.60 2.03 42.32 16
4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16
5 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16
6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16
7 C -0.50 -28.13 9.05 23.39 0.21 -27.92 16
8 H 0.08 4.27 7.87 -2.91 -0.02 4.24 16
9 C 0.07 4.00 5.55 -21.28 -0.12 3.88 16
10 C -0.17 -9.97 8.60 22.48 0.19 -9.78 16
11 C -0.10 -5.45 8.57 22.14 0.19 -5.26 16
12 C 0.02 1.03 6.29 38.57 0.24 1.27 16
13 N -0.64 -23.84 4.32 -303.12 -1.31 -25.16 16
14 C 0.50 17.44 5.13 87.66 0.45 17.89 16
15 O -0.56 -24.51 11.18 -3.02 -0.03 -24.55 16
16 C -0.09 -1.96 2.21 -11.40 -0.03 -1.98 16
17 H 0.12 2.15 7.84 -2.39 -0.02 2.14 16
18 C -0.07 -1.30 5.44 29.66 0.16 -1.14 16
19 C -0.15 -3.31 8.77 27.03 0.24 -3.07 16
20 C -0.16 -3.76 8.85 27.03 0.24 -3.52 16
21 C -0.08 -1.83 4.74 29.66 0.14 -1.69 16
22 C -0.06 -1.18 2.48 -11.40 -0.03 -1.21 16
23 H 0.16 1.76 8.12 -2.39 -0.02 1.74 16
24 C 0.48 10.37 7.37 71.24 0.53 10.89 16
25 O -0.53 -14.53 13.78 21.98 0.30 -14.22 16
26 O -0.51 -8.30 13.37 -51.40 -0.69 -8.99 16
27 C -0.11 -5.07 9.89 22.14 0.22 -4.85 16
28 C -0.22 -11.06 9.74 22.48 0.22 -10.84 16
29 H 0.28 14.76 8.30 -92.71 -0.77 13.99 16
30 H 0.10 6.06 6.20 -2.91 -0.02 6.04 16
31 H 0.09 4.91 6.40 -2.91 -0.02 4.90 16
32 H 0.41 13.25 7.30 -92.70 -0.68 12.57 16
33 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16
34 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16
35 H 0.11 2.30 8.06 -2.91 -0.02 2.28 16
36 H 0.11 2.45 8.06 -2.91 -0.02 2.42 16
37 H 0.04 1.33 6.92 -2.39 -0.02 1.32 16
38 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16
39 H 0.43 3.92 9.10 -74.05 -0.67 3.25 16
40 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16
41 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16
Total: -1.00 -76.18 336.99 3.57 -72.60
By element:
Atomic # 1 Polarization: 41.13 SS G_CDS: -0.27 Total: 40.86 kcal
Atomic # 6 Polarization: -38.73 SS G_CDS: 3.30 Total: -35.43 kcal
Atomic # 7 Polarization: -71.52 SS G_CDS: -1.07 Total: -72.60 kcal
Atomic # 8 Polarization: -47.34 SS G_CDS: -0.42 Total: -47.76 kcal
Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal
Total: -76.18 3.57 -72.60 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000013468450.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.398 kcal
(2) G-P(sol) polarization free energy of solvation -76.177 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.575 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.603 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.92 seconds