Wall clock time and date at job start Tue Mar 31 2020 11:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86794 * 119.99915 * 2 1 4 4 H 1.48498 * 109.47318 * 240.00240 * 3 2 1 5 5 H 1.48499 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47316 * 120.00123 * 3 2 1 7 7 C 1.39899 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99854 * 190.64050 * 7 2 1 9 9 C 1.41151 * 120.00473 * 10.36886 * 7 2 1 10 10 C 1.40868 * 120.16379 * 28.91669 * 9 7 2 11 11 C 1.36372 * 119.83240 * 179.71956 * 10 9 7 12 12 C 1.39490 * 120.16590 * 0.53937 * 11 10 9 13 13 N 1.39232 * 119.83432 * 179.73557 * 12 11 10 14 14 C 1.34774 * 120.00159 * 326.16996 * 13 12 11 15 15 O 1.21278 * 120.00026 * 355.53530 * 14 13 12 16 16 C 1.50699 * 119.99970 * 175.53933 * 14 13 12 17 17 H 1.08997 * 109.64197 * 23.15327 * 16 14 13 18 18 C 1.53024 * 109.64277 * 143.79342 * 16 14 13 19 19 C 1.50065 * 110.14750 * 70.24595 * 18 16 14 20 20 C 1.29450 * 124.07583 * 17.13499 * 19 18 16 21 21 C 1.50066 * 124.07350 * 359.52827 * 20 19 18 22 22 C 1.53022 * 110.14628 * 17.13246 * 21 20 19 23 23 H 1.08999 * 109.64319 * 70.25394 * 22 21 20 24 24 C 1.50706 * 109.63872 * 190.88214 * 22 21 20 25 25 O 1.20822 * 120.00240 * 118.94979 * 24 22 21 26 26 O 1.34228 * 119.99584 * 298.93863 * 24 22 21 27 27 C 1.39481 * 120.33097 * 359.75555 * 12 11 10 28 28 C 1.36381 * 120.16800 * 359.96126 * 27 12 11 29 29 H 0.96996 * 119.99961 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.08464 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.92170 * 180.27735 * 11 10 9 32 32 H 0.97005 * 120.00122 * 146.16275 * 13 12 11 33 33 H 1.08997 * 109.35753 * 190.45151 * 18 16 14 34 34 H 1.08995 * 109.35869 * 310.03788 * 18 16 14 35 35 H 1.07999 * 117.96554 * 197.15062 * 19 18 16 36 36 H 1.07999 * 117.95893 * 179.50616 * 20 19 18 37 37 H 1.09003 * 109.35647 * 256.92724 * 21 20 19 38 38 H 1.09001 * 109.35813 * 137.34447 * 21 20 19 39 39 H 0.96708 * 117.00019 * 179.97438 * 26 24 22 40 40 H 1.07997 * 119.91665 * 179.97438 * 27 12 11 41 41 H 1.07999 * 120.08246 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0965 1.6964 1.2124 7 6 2.0082 -1.2116 -0.0005 8 1 3.0743 -1.2197 0.1722 9 6 1.3198 -2.4239 -0.2211 10 6 0.1507 -2.4412 -1.0067 11 6 -0.5059 -3.6173 -1.2201 12 6 -0.0288 -4.7993 -0.6535 13 7 -0.7077 -5.9952 -0.8714 14 6 -2.0503 -5.9963 -0.9883 15 8 -2.6742 -4.9695 -0.8234 16 6 -2.7764 -7.2735 -1.3239 17 1 -2.1639 -8.1289 -1.0389 18 6 -4.1106 -7.3185 -0.5759 19 6 -5.0583 -6.3053 -1.1479 20 6 -4.9095 -5.7454 -2.3055 21 6 -3.7630 -6.0238 -3.2329 22 6 -3.0628 -7.3234 -2.8300 23 1 -3.7096 -8.1722 -3.0522 24 6 -1.7670 -7.4565 -3.5879 25 8 -0.7190 -7.5069 -2.9886 26 8 -1.7771 -7.5194 -4.9287 27 6 1.1247 -4.7891 0.1306 28 6 1.7952 -3.6216 0.3481 29 1 -0.4850 0.8400 0.0004 30 1 -0.2225 -1.5261 -1.4422 31 1 -1.3998 -3.6329 -1.8258 32 1 -0.2143 -6.8276 -0.9392 33 1 -4.5448 -8.3137 -0.6713 34 1 -3.9412 -7.1000 0.4784 35 1 -5.9179 -6.0257 -0.5569 36 1 -5.6571 -5.0340 -2.6237 37 1 -3.0510 -5.1998 -3.1847 38 1 -4.1372 -6.1160 -4.2525 39 1 -0.9212 -7.6042 -5.3707 40 1 1.4879 -5.7080 0.5664 41 1 2.6885 -3.6153 0.9551 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013468450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:55 Heat of formation + Delta-G solvation = -110.001194 kcal Electronic energy + Delta-G solvation = -26511.983475 eV Core-core repulsion = 22741.772130 eV Total energy + Delta-G solvation = -3770.211346 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -42.26862 -40.75627 -39.50332 -37.94517 -37.11193 -36.01906 -34.64897 -32.61386 -32.14363 -31.41513 -30.67777 -27.15319 -25.73354 -24.79918 -23.27991 -22.89474 -22.06483 -20.91964 -19.43295 -19.19796 -19.06018 -18.35313 -17.64484 -17.36840 -16.87932 -16.75116 -16.26556 -15.84375 -15.68591 -15.22560 -14.86587 -14.64768 -14.39326 -14.17398 -14.01958 -13.86974 -13.58380 -13.54380 -13.30156 -13.23042 -12.92984 -12.79149 -12.67992 -12.47962 -12.32359 -11.97902 -11.72929 -11.71450 -11.58217 -11.21854 -11.17739 -10.66036 -10.38569 -9.69323 -9.46142 -8.77515 -8.56070 -6.28985 0.81596 1.11312 1.17550 1.36903 1.45087 1.50170 1.54414 1.86533 2.07613 2.21520 2.45803 2.79157 3.42855 3.60371 3.71679 3.72684 4.12530 4.17818 4.26300 4.35610 4.40989 4.42685 4.44307 4.57826 4.77798 4.84801 4.93766 4.95837 5.05022 5.09954 5.19200 5.20341 5.31243 5.46651 5.60896 5.67547 5.76928 5.88106 6.07962 6.13322 6.15582 6.34410 6.67487 6.82599 6.93411 6.97663 7.02360 7.53197 8.38535 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.003629 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.700921 B = 7714.053085 C = 8078.607013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.498 4.498 8 H 0.080 0.920 9 C 0.070 3.930 10 C -0.171 4.171 11 C -0.102 4.102 12 C 0.022 3.978 13 N -0.636 5.636 14 C 0.496 3.504 15 O -0.559 6.559 16 C -0.088 4.088 17 H 0.122 0.878 18 C -0.069 4.069 19 C -0.147 4.147 20 C -0.156 4.156 21 C -0.077 4.077 22 C -0.062 4.062 23 H 0.164 0.836 24 C 0.480 3.520 25 O -0.533 6.533 26 O -0.509 6.509 27 C -0.111 4.111 28 C -0.217 4.217 29 H 0.285 0.715 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.413 0.587 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.040 0.960 38 H 0.103 0.897 39 H 0.427 0.573 40 H 0.128 0.872 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.237 -17.324 -7.002 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.186 4.186 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.528 4.528 8 H 0.098 0.902 9 C 0.067 3.933 10 C -0.191 4.191 11 C -0.122 4.122 12 C -0.072 4.072 13 N -0.282 5.282 14 C 0.284 3.716 15 O -0.437 6.437 16 C -0.109 4.109 17 H 0.141 0.859 18 C -0.106 4.106 19 C -0.165 4.165 20 C -0.174 4.174 21 C -0.115 4.115 22 C -0.081 4.081 23 H 0.181 0.819 24 C 0.323 3.677 25 O -0.422 6.422 26 O -0.322 6.322 27 C -0.131 4.131 28 C -0.237 4.237 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.251 0.749 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.059 0.941 38 H 0.121 0.879 39 H 0.288 0.712 40 H 0.146 0.854 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.992 -16.458 -6.549 19.864 hybrid contribution 1.188 0.932 -0.204 1.524 sum -7.804 -15.526 -6.753 18.643 Atomic orbital electron populations 1.69926 1.09115 1.30230 1.37404 1.26844 0.95558 1.04765 0.91406 0.85165 0.78519 0.75300 0.80146 1.18273 1.19542 1.18124 1.19771 0.96168 0.91564 1.45275 0.90182 1.17989 0.92199 0.93513 0.89582 1.20938 0.99335 0.96276 1.02544 1.20417 0.98754 0.92830 1.00179 1.17363 0.97511 0.86492 1.05838 1.43141 1.06742 1.08510 1.69766 1.21196 0.81985 0.91605 0.76815 1.90725 1.67077 1.35730 1.50139 1.21355 0.98627 0.95777 0.95139 0.85950 1.20406 0.90632 1.00674 0.98870 1.21991 0.99850 0.98998 0.95633 1.21744 0.98142 1.00650 0.96827 1.20349 0.96094 0.94418 1.00590 1.21078 0.92444 1.03129 0.91432 0.81914 1.23559 0.91609 0.71120 0.81383 1.90668 1.34796 1.46619 1.70111 1.84465 1.42687 1.84465 1.20581 1.20412 0.95986 0.98110 0.98576 1.20864 1.03531 0.93100 1.06200 0.90507 0.88366 0.89150 0.74880 0.85625 0.90924 0.87154 0.87594 0.94108 0.87879 0.71154 0.85414 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.68 10.82 21.82 0.24 -47.44 16 2 C 0.03 1.44 5.26 85.24 0.45 1.89 16 3 Si 0.99 40.29 29.57 68.60 2.03 42.32 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.50 -28.13 9.05 23.39 0.21 -27.92 16 8 H 0.08 4.27 7.87 -2.91 -0.02 4.24 16 9 C 0.07 4.00 5.55 -21.28 -0.12 3.88 16 10 C -0.17 -9.97 8.60 22.48 0.19 -9.78 16 11 C -0.10 -5.45 8.57 22.14 0.19 -5.26 16 12 C 0.02 1.03 6.29 38.57 0.24 1.27 16 13 N -0.64 -23.84 4.32 -303.12 -1.31 -25.16 16 14 C 0.50 17.44 5.13 87.66 0.45 17.89 16 15 O -0.56 -24.51 11.18 -3.02 -0.03 -24.55 16 16 C -0.09 -1.96 2.21 -11.40 -0.03 -1.98 16 17 H 0.12 2.15 7.84 -2.39 -0.02 2.14 16 18 C -0.07 -1.30 5.44 29.66 0.16 -1.14 16 19 C -0.15 -3.31 8.77 27.03 0.24 -3.07 16 20 C -0.16 -3.76 8.85 27.03 0.24 -3.52 16 21 C -0.08 -1.83 4.74 29.66 0.14 -1.69 16 22 C -0.06 -1.18 2.48 -11.40 -0.03 -1.21 16 23 H 0.16 1.76 8.12 -2.39 -0.02 1.74 16 24 C 0.48 10.37 7.37 71.24 0.53 10.89 16 25 O -0.53 -14.53 13.78 21.98 0.30 -14.22 16 26 O -0.51 -8.30 13.37 -51.40 -0.69 -8.99 16 27 C -0.11 -5.07 9.89 22.14 0.22 -4.85 16 28 C -0.22 -11.06 9.74 22.48 0.22 -10.84 16 29 H 0.28 14.76 8.30 -92.71 -0.77 13.99 16 30 H 0.10 6.06 6.20 -2.91 -0.02 6.04 16 31 H 0.09 4.91 6.40 -2.91 -0.02 4.90 16 32 H 0.41 13.25 7.30 -92.70 -0.68 12.57 16 33 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 35 H 0.11 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.11 2.45 8.06 -2.91 -0.02 2.42 16 37 H 0.04 1.33 6.92 -2.39 -0.02 1.32 16 38 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16 39 H 0.43 3.92 9.10 -74.05 -0.67 3.25 16 40 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 41 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -76.18 336.99 3.57 -72.60 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: -0.27 Total: 40.86 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 3.30 Total: -35.43 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.07 Total: -72.60 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -0.42 Total: -47.76 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -76.18 3.57 -72.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013468450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.398 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds