Wall clock time and date at job start Tue Mar 31 2020 11:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00630 * 2 1 4 4 H 1.48507 * 109.46940 * 270.00716 * 3 2 1 5 5 H 1.48500 * 109.46843 * 29.99971 * 3 2 1 6 6 H 1.48496 * 109.47372 * 150.00553 * 3 2 1 7 7 C 1.38808 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99946 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00025 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00030 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47205 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00255 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99728 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99681 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46998 * 174.91785 * 14 13 11 16 16 C 1.52998 * 109.46847 * 305.37913 * 15 14 13 17 17 C 1.50700 * 109.47123 * 303.17212 * 16 15 14 18 18 O 1.20822 * 120.00026 * 353.97754 * 17 16 15 19 19 O 1.34229 * 120.00085 * 173.97081 * 17 16 15 20 20 C 1.53000 * 109.47217 * 65.37555 * 15 14 13 21 21 C 1.53005 * 109.47005 * 179.97438 * 20 15 14 22 22 C 1.52999 * 109.47276 * 300.00353 * 21 20 15 23 23 C 1.52996 * 109.47053 * 59.99857 * 22 21 20 24 24 C 1.52999 * 109.46927 * 185.37824 * 15 14 13 25 25 H 0.97008 * 119.99719 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46996 * 59.99835 * 10 9 7 27 27 H 1.09002 * 109.47026 * 300.00630 * 10 9 7 28 28 H 0.96998 * 120.00383 * 359.97438 * 13 11 10 29 29 H 1.08989 * 109.47250 * 54.91386 * 14 13 11 30 30 H 1.09006 * 109.47064 * 294.91179 * 14 13 11 31 31 H 1.09005 * 109.46793 * 183.17664 * 16 15 14 32 32 H 1.08994 * 109.47457 * 63.17896 * 16 15 14 33 33 H 0.96700 * 117.00222 * 179.97438 * 19 17 16 34 34 H 1.08995 * 109.47501 * 300.00502 * 20 15 14 35 35 H 1.09006 * 109.46932 * 60.00434 * 20 15 14 36 36 H 1.09003 * 109.46918 * 180.02562 * 21 20 15 37 37 H 1.08997 * 109.46645 * 60.00705 * 21 20 15 38 38 H 1.08994 * 109.47060 * 299.99758 * 22 21 20 39 39 H 1.08999 * 109.46977 * 179.97438 * 22 21 20 40 40 H 1.09005 * 109.47648 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.47357 * 60.00122 * 23 22 21 42 42 H 1.08994 * 109.47060 * 299.99713 * 24 15 14 43 43 H 1.09003 * 109.47141 * 60.00099 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4479 2.6526 0.7000 6 1 3.5480 1.4400 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1374 -0.0005 9 16 3.7722 -1.2022 -0.0012 10 6 4.0864 -2.9847 -0.0009 11 6 5.5728 -3.2328 -0.0008 12 8 6.3439 -2.2966 -0.0014 13 7 6.0453 -4.4950 -0.0011 14 6 7.4904 -4.7362 -0.0016 15 6 7.7570 -6.2374 0.1259 16 6 7.0410 -6.7790 1.3648 17 6 7.4986 -6.0179 2.5823 18 8 8.3912 -5.2090 2.4890 19 8 6.9145 -6.2387 3.7706 20 6 7.2345 -6.9558 -1.1199 21 6 7.5017 -8.4569 -0.9926 22 6 9.0067 -8.6976 -0.8585 23 6 9.5290 -7.9792 0.3872 24 6 9.2619 -6.4785 0.2603 25 1 -0.4850 0.8401 0.0004 26 1 3.6431 -3.4319 -0.8906 27 1 3.6437 -3.4316 0.8893 28 1 5.4287 -5.2438 -0.0011 29 1 7.9463 -4.2135 0.8392 30 1 7.9198 -4.3689 -0.9338 31 1 7.2765 -7.8362 1.4874 32 1 5.9645 -6.6583 1.2442 33 1 7.2423 -5.7269 4.5227 34 1 6.1625 -6.7839 -1.2157 35 1 7.7447 -6.5699 -2.0025 36 1 7.1299 -8.9686 -1.8803 37 1 6.9919 -8.8430 -0.1100 38 1 9.5164 -8.3114 -1.7412 39 1 9.1969 -9.7670 -0.7674 40 1 10.6012 -8.1510 0.4831 41 1 9.0193 -8.3654 1.2700 42 1 9.7719 -6.0926 -0.6223 43 1 9.6340 -5.9667 1.1478 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043413299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:40 Heat of formation + Delta-G solvation = -150.404357 kcal Electronic energy + Delta-G solvation = -24824.813796 eV Core-core repulsion = 21188.294389 eV Total energy + Delta-G solvation = -3636.519407 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -41.38141 -39.44067 -38.68722 -36.33361 -34.85123 -32.43814 -32.28865 -31.11553 -29.70350 -28.68875 -25.76040 -25.39673 -23.09112 -22.46124 -21.36571 -20.36700 -18.80284 -18.31985 -17.94258 -16.82255 -16.63073 -16.24949 -15.85724 -15.43003 -15.10203 -14.94137 -14.61788 -14.45619 -14.08178 -13.80639 -13.48897 -13.16557 -13.13089 -12.89084 -12.78380 -12.55169 -12.26112 -12.03825 -11.86907 -11.59240 -11.44852 -11.30087 -11.25560 -11.00015 -10.93798 -10.64200 -10.60057 -10.40250 -10.02847 -9.84542 -9.47425 -8.99978 -8.85337 -8.48420 -6.90570 -6.28381 -3.99758 1.98978 2.76740 2.82145 3.03151 3.32788 3.36504 3.51976 3.68645 4.09515 4.25924 4.34173 4.35183 4.54940 4.74506 4.77649 4.83868 4.88937 4.99866 5.10810 5.11679 5.13873 5.16027 5.25653 5.31383 5.36922 5.53490 5.62963 5.70472 5.74727 5.78246 5.81370 5.82499 5.91042 6.01450 6.04067 6.06323 6.10520 6.45818 6.57780 7.63039 7.69486 7.94777 8.42009 8.54346 9.18029 10.80878 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.003014 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.761927 B = 9288.871071 C = 9602.857178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.529 3.471 12 O -0.517 6.517 13 N -0.738 5.738 14 C 0.115 3.885 15 C -0.052 4.052 16 C -0.111 4.111 17 C 0.478 3.522 18 O -0.502 6.502 19 O -0.519 6.519 20 C -0.111 4.111 21 C -0.123 4.123 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.121 4.121 25 H 0.271 0.729 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.394 0.606 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.411 0.589 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.354 -21.623 1.818 27.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.314 3.686 12 O -0.391 6.391 13 N -0.393 5.393 14 C -0.008 4.008 15 C -0.052 4.052 16 C -0.149 4.149 17 C 0.321 3.679 18 O -0.390 6.390 19 O -0.331 6.331 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.158 4.158 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.229 0.771 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.270 0.730 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 18.578 -19.948 1.453 27.298 hybrid contribution -1.003 -0.375 0.445 1.159 sum 17.575 -20.323 1.897 26.935 Atomic orbital electron populations 1.69940 1.05919 1.27752 1.48153 1.24712 0.94448 0.98967 0.93181 0.86736 0.81913 0.83264 0.79949 1.19199 1.19954 1.15912 1.22325 0.88318 0.97514 1.58706 0.89409 1.84813 1.09186 1.00106 1.97410 1.23282 0.94165 1.04377 1.05674 1.20253 0.90493 0.82364 0.75441 1.90707 1.58762 1.42181 1.47468 1.46060 1.07591 1.07854 1.77831 1.21697 0.81275 0.94058 1.03813 1.20638 0.96633 0.94677 0.93270 1.21603 1.02850 1.01056 0.89369 1.23419 0.79373 0.80738 0.84411 1.90641 1.29505 1.33547 1.85271 1.84520 1.63169 1.65737 1.19704 1.21645 1.01310 0.95019 0.96854 1.21606 0.96398 0.95979 1.02060 1.21561 0.95885 0.99969 0.98416 1.21582 1.00896 0.95412 0.97937 1.21781 0.93526 0.96318 1.04222 0.91952 0.88540 0.88634 0.77103 0.88715 0.91667 0.86820 0.87814 0.73007 0.91404 0.90792 0.91659 0.91756 0.91822 0.92144 0.91818 0.92265 0.91367 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.72 13.97 55.49 0.78 -25.95 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 22.01 27.74 -169.99 -4.71 17.29 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 7 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 10 C -0.12 -2.43 6.16 36.00 0.22 -2.21 16 11 C 0.53 9.62 7.85 -10.99 -0.09 9.53 16 12 O -0.52 -11.61 15.86 5.56 0.09 -11.52 16 13 N -0.74 -9.49 4.97 -60.29 -0.30 -9.79 16 14 C 0.12 1.38 4.14 -4.04 -0.02 1.37 16 15 C -0.05 -0.42 0.27 -154.51 -0.04 -0.46 16 16 C -0.11 -0.82 3.89 -27.88 -0.11 -0.93 16 17 C 0.48 4.68 7.74 36.01 0.28 4.96 16 18 O -0.50 -6.30 12.16 -18.75 -0.23 -6.53 16 19 O -0.52 -4.33 13.42 -39.26 -0.53 -4.85 16 20 C -0.11 -0.75 4.61 -26.73 -0.12 -0.87 16 21 C -0.12 -0.67 5.65 -26.73 -0.15 -0.82 16 22 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 23 C -0.12 -0.76 5.65 -26.76 -0.15 -0.91 16 24 C -0.12 -0.98 4.47 -26.75 -0.12 -1.10 16 25 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 27 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 28 H 0.39 3.85 6.21 -40.82 -0.25 3.60 16 29 H 0.09 1.41 5.62 -51.93 -0.29 1.12 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.11 0.63 4.82 -51.93 -0.25 0.38 16 32 H 0.10 0.68 6.76 -51.93 -0.35 0.33 16 33 H 0.41 2.05 9.10 45.56 0.41 2.47 16 34 H 0.07 0.44 7.10 -51.93 -0.37 0.07 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.31 6.50 -51.93 -0.34 -0.03 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.35 6.36 -51.93 -0.33 0.02 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.91 5.58 -51.93 -0.29 0.62 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -36.09 347.19 -7.35 -43.44 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.44 Total: 2.66 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.24 Total: -4.36 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.48 Total: -35.74 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.67 Total: -22.90 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.09 -7.35 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043413299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.964 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds