Wall clock time and date at job start Tue Mar 31 2020 11:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48496 * 109.46897 * 270.00001 * 3 2 1 5 5 H 1.48496 * 109.47501 * 30.00251 * 3 2 1 6 6 H 1.48501 * 109.46824 * 150.00336 * 3 2 1 7 7 C 1.37877 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99464 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00480 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99899 * 90.00099 * 10 9 7 12 12 C 1.50703 * 109.47064 * 270.00279 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 C 1.34773 * 120.00646 * 270.00265 * 10 9 7 18 18 O 1.21282 * 120.00692 * 179.97438 * 17 10 9 19 19 C 1.50705 * 119.99759 * 0.02562 * 17 10 9 20 20 O 1.42904 * 109.47412 * 180.02562 * 19 17 10 21 21 C 1.35895 * 116.99615 * 180.02562 * 20 19 17 22 22 C 1.38725 * 120.06042 * 359.71652 * 21 20 19 23 23 C 1.38151 * 119.94603 * 179.74526 * 22 21 20 24 24 C 1.38274 * 120.04895 * 0.51403 * 23 22 21 25 25 C 1.38259 * 120.11418 * 359.76129 * 24 23 22 26 26 C 1.38139 * 120.05643 * 359.97438 * 25 24 23 27 27 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46922 * 60.00021 * 9 7 2 29 29 H 1.08996 * 109.47481 * 300.00312 * 9 7 2 30 30 H 1.09002 * 109.47068 * 30.00248 * 11 10 9 31 31 H 1.09001 * 109.47372 * 150.00336 * 11 10 9 32 32 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 33 33 H 1.08006 * 126.57610 * 179.97438 * 14 13 12 34 34 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 35 35 H 1.09006 * 109.46606 * 299.99889 * 19 17 10 36 36 H 1.08999 * 109.47462 * 59.99201 * 19 17 10 37 37 H 1.07996 * 120.03329 * 0.02562 * 22 21 20 38 38 H 1.08000 * 119.97775 * 180.27556 * 23 22 21 39 39 H 1.08006 * 119.93723 * 179.74181 * 24 23 22 40 40 H 1.08002 * 119.97289 * 179.97438 * 25 24 23 41 41 H 1.08006 * 120.02636 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6798 -4.1700 1.2664 12 6 3.9233 -3.4379 1.7009 13 6 3.9588 -2.3377 2.4740 14 6 5.3204 -1.9905 2.6300 15 6 6.0356 -2.8996 1.9435 16 8 5.1844 -3.7766 1.3865 17 6 2.6400 -4.1244 -1.1694 18 8 3.4284 -5.0460 -1.1705 19 6 2.1499 -3.5507 -2.4740 20 8 2.7520 -4.2566 -3.5609 21 6 2.4142 -3.8605 -4.8162 22 6 1.5172 -2.8180 -4.9982 23 6 1.1796 -2.4138 -6.2754 24 6 1.7268 -3.0545 -7.3718 25 6 2.6166 -4.0975 -7.1931 26 6 2.9616 -4.5018 -5.9180 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 1.9070 -4.0565 2.0267 31 1 2.9081 -5.2278 1.1354 32 1 3.1101 -1.8196 2.8955 33 1 5.7113 -1.1555 3.1926 34 1 7.1120 -2.9227 1.8578 35 1 1.0661 -3.6523 -2.5311 36 1 2.4194 -2.4961 -2.5313 37 1 1.0867 -2.3198 -4.1423 38 1 0.4847 -1.5993 -6.4177 39 1 1.4583 -2.7398 -8.3695 40 1 3.0423 -4.5966 -8.0510 41 1 3.6564 -5.3169 -5.7790 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060625765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:30 Heat of formation + Delta-G solvation = -38.956350 kcal Electronic energy + Delta-G solvation = -26007.349535 eV Core-core repulsion = 22240.218925 eV Total energy + Delta-G solvation = -3767.130610 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.39305 -41.43993 -40.39967 -38.22642 -36.97786 -34.66683 -33.82497 -32.38348 -31.86397 -30.97847 -29.27693 -29.18917 -26.46152 -24.94417 -23.60898 -23.04921 -22.56771 -21.56846 -20.27574 -19.43914 -18.81736 -18.25765 -17.82187 -17.46724 -17.26191 -16.90534 -16.64541 -16.42267 -16.06101 -15.81680 -15.24326 -15.02642 -14.59248 -14.32208 -14.27057 -14.04527 -13.69597 -13.63841 -13.58782 -13.44428 -13.36651 -12.91305 -12.73198 -12.57438 -12.47028 -12.15125 -12.09603 -11.81545 -11.76271 -10.95268 -10.73386 -10.57866 -9.94997 -9.78854 -9.30610 -9.20008 -8.21539 -6.31767 0.39653 0.48392 0.76542 1.37117 1.41024 1.44638 1.51512 1.61660 1.88407 2.25261 2.38677 2.69941 2.85164 3.10793 3.49217 3.86188 3.88249 4.01245 4.02959 4.12722 4.18733 4.22937 4.30490 4.40665 4.48253 4.50633 4.54328 4.72582 4.79032 4.98116 5.09620 5.10621 5.14494 5.27059 5.37681 5.49414 5.56483 5.59828 5.69283 5.73630 5.85798 6.03487 6.25996 6.34972 6.42438 6.77535 7.09823 7.39040 8.84556 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.010846 B = 0.004751 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.878061 B = 5892.072355 C = 7474.046139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.034 3.966 3 Si 0.939 3.061 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.047 0.953 9 C 0.245 3.755 10 N -0.587 5.587 11 C 0.198 3.802 12 C -0.044 4.044 13 C -0.185 4.185 14 C -0.229 4.229 15 C -0.049 4.049 16 O -0.194 6.194 17 C 0.518 3.482 18 O -0.571 6.571 19 C 0.059 3.941 20 O -0.318 6.318 21 C 0.102 3.898 22 C -0.224 4.224 23 C -0.085 4.085 24 C -0.157 4.157 25 C -0.078 4.078 26 C -0.167 4.167 27 H 0.267 0.733 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.146 0.854 33 H 0.165 0.835 34 H 0.235 0.765 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 -4.045 -6.102 8.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.167 4.167 3 Si 0.765 3.235 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.065 0.935 9 C 0.125 3.875 10 N -0.318 5.318 11 C 0.076 3.924 12 C -0.094 4.094 13 C -0.205 4.205 14 C -0.248 4.248 15 C -0.116 4.116 16 O -0.091 6.091 17 C 0.305 3.695 18 O -0.451 6.451 19 C -0.019 4.019 20 O -0.232 6.232 21 C 0.057 3.943 22 C -0.242 4.242 23 C -0.103 4.103 24 C -0.175 4.175 25 C -0.096 4.096 26 C -0.186 4.186 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.149 0.851 31 H 0.109 0.891 32 H 0.164 0.836 33 H 0.183 0.817 34 H 0.251 0.749 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.142 0.858 38 H 0.162 0.838 39 H 0.173 0.827 40 H 0.179 0.821 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.799 -4.810 -6.198 8.716 hybrid contribution 0.175 1.631 0.599 1.746 sum 3.973 -3.179 -5.599 7.566 Atomic orbital electron populations 1.69968 1.06730 1.27999 1.50620 1.25390 0.95325 1.01355 0.94676 0.85840 0.78943 0.80497 0.78200 1.20469 1.20561 1.19986 1.21489 0.92923 0.91177 1.51337 0.93513 1.19351 0.87117 0.82365 0.98660 1.48185 1.44617 1.34999 1.04023 1.19883 0.89779 0.96649 0.86099 1.22981 0.84425 1.00134 1.01885 1.21730 0.98333 0.97304 1.03149 1.22118 0.93136 1.03273 1.06278 1.24733 0.97114 0.91084 0.98666 1.84058 1.16432 1.48136 1.60427 1.20246 0.80861 0.82459 0.85887 1.90637 1.35753 1.30778 1.87921 1.22387 0.98974 0.96800 0.83706 1.86047 1.66625 1.57916 1.12570 1.19482 0.95640 0.95053 0.84140 1.21517 1.02524 1.00091 1.00114 1.21301 0.98586 0.99171 0.91283 1.21472 0.98884 0.97359 0.99818 1.21337 0.96179 0.96180 0.95869 1.20716 1.04048 1.02992 0.90832 0.92339 0.94578 0.94258 0.85134 0.89094 0.83620 0.81722 0.74914 0.87885 0.88754 0.85829 0.83812 0.82698 0.82106 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.34 13.29 21.45 0.28 -47.06 16 2 C 0.03 1.67 5.46 84.65 0.46 2.13 16 3 Si 0.94 40.94 29.54 68.60 2.03 42.96 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.53 -25.99 9.04 25.60 0.23 -25.75 16 8 H 0.05 2.45 7.65 -2.91 -0.02 2.43 16 9 C 0.25 10.80 5.01 85.63 0.43 11.23 16 10 N -0.59 -24.05 2.44 -830.50 -2.03 -26.07 16 11 C 0.20 7.21 5.98 85.63 0.51 7.72 16 12 C -0.04 -1.68 6.90 24.83 0.17 -1.50 16 13 C -0.19 -6.82 10.40 22.19 0.23 -6.59 16 14 C -0.23 -7.37 10.91 22.19 0.24 -7.13 16 15 C -0.05 -1.51 12.09 66.97 0.81 -0.70 16 16 O -0.19 -7.56 10.65 -2.58 -0.03 -7.58 16 17 C 0.52 22.44 7.75 87.66 0.68 23.11 16 18 O -0.57 -27.61 16.08 16.00 0.26 -27.35 16 19 C 0.06 2.32 3.77 71.24 0.27 2.59 16 20 O -0.32 -12.67 9.67 -73.33 -0.71 -13.38 16 21 C 0.10 3.45 6.69 22.51 0.15 3.60 16 22 C -0.22 -6.94 9.04 22.37 0.20 -6.74 16 23 C -0.09 -2.11 10.04 22.26 0.22 -1.88 16 24 C -0.16 -3.22 10.04 22.28 0.22 -3.00 16 25 C -0.08 -1.66 10.04 22.25 0.22 -1.43 16 26 C -0.17 -4.71 9.99 22.37 0.22 -4.49 16 27 H 0.27 13.29 8.31 -92.71 -0.77 12.51 16 28 H 0.04 1.62 6.44 -2.38 -0.02 1.60 16 29 H 0.04 1.77 7.89 -2.39 -0.02 1.75 16 30 H 0.13 3.99 7.89 -2.39 -0.02 3.98 16 31 H 0.09 3.24 7.42 -2.39 -0.02 3.22 16 32 H 0.15 5.35 8.06 -2.91 -0.02 5.32 16 33 H 0.17 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.23 4.91 8.06 -2.91 -0.02 4.89 16 35 H 0.10 3.67 6.91 -2.38 -0.02 3.65 16 36 H 0.09 3.86 7.53 -2.39 -0.02 3.84 16 37 H 0.12 3.99 6.30 -2.91 -0.02 3.97 16 38 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -65.34 358.88 6.13 -59.21 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 1.04 Total: 28.09 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 5.28 Total: -8.82 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.74 Total: -73.13 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -0.48 Total: -48.31 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Total: -65.34 6.13 -59.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.253 kcal (2) G-P(sol) polarization free energy of solvation -65.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds