Wall clock time and date at job start Tue Mar 31 2020 11:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00126 * 2 1 4 4 H 1.48500 * 109.46966 * 270.00089 * 3 2 1 5 5 H 1.48503 * 109.46863 * 29.99735 * 3 2 1 6 6 H 1.48496 * 109.47599 * 149.99825 * 3 2 1 7 7 C 1.38718 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00002 * 359.97438 * 7 2 1 9 9 O 1.34784 * 120.00157 * 179.97438 * 7 2 1 10 10 C 1.35575 * 116.99863 * 185.05241 * 9 7 2 11 11 C 1.39170 * 119.90094 * 354.44522 * 10 9 7 12 12 C 1.37599 * 120.10234 * 179.97438 * 11 10 9 13 13 C 1.40020 * 119.89692 * 0.02562 * 12 11 10 14 14 C 1.46959 * 120.10164 * 179.97438 * 13 12 11 15 15 C 1.35026 * 120.00256 * 179.72578 * 14 13 12 16 16 C 1.46250 * 120.00086 * 180.27845 * 15 14 13 17 17 O 1.21712 * 120.00264 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99681 * 180.02562 * 16 15 14 19 19 C 1.46500 * 119.99784 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.46974 * 179.97438 * 19 18 16 21 21 O 1.20755 * 120.00461 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99766 * 179.97438 * 20 19 18 23 23 C 1.53004 * 117.50150 * 223.62462 * 22 20 19 24 24 C 1.53002 * 60.00088 * 252.51400 * 23 22 20 25 25 C 1.40027 * 119.79755 * 0.28049 * 13 12 11 26 26 C 1.37600 * 119.89863 * 359.41483 * 25 13 12 27 27 H 0.96993 * 120.00405 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.95155 * 359.97438 * 11 10 9 29 29 H 1.07997 * 120.05048 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.99944 * 0.02562 * 14 13 12 31 31 H 1.08000 * 119.99740 * 0.28219 * 15 14 13 32 32 H 0.96999 * 120.00694 * 359.97438 * 18 16 15 33 33 H 1.08999 * 109.47268 * 300.00052 * 19 18 16 34 34 H 1.09003 * 109.47289 * 60.00422 * 19 18 16 35 35 H 1.08998 * 115.55329 * 9.33712 * 22 20 19 36 36 H 1.08995 * 117.49681 * 359.97438 * 23 22 20 37 37 H 1.08994 * 117.49914 * 145.02166 * 23 22 20 38 38 H 1.08999 * 117.49734 * 252.50990 * 24 23 22 39 39 H 1.08994 * 117.52036 * 107.48116 * 24 23 22 40 40 H 1.08005 * 120.04941 * 179.72241 * 25 13 12 41 41 H 1.07995 * 119.95301 * 180.28266 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0087 -1.2013 -0.0005 8 1 1.4687 -2.1366 -0.0005 9 8 3.3565 -1.2013 -0.0011 10 6 3.9720 -2.4046 -0.1080 11 6 3.2170 -3.5736 -0.0940 12 6 3.8373 -4.7971 -0.2028 13 6 5.2303 -4.8647 -0.3270 14 6 5.8975 -6.1690 -0.4429 15 6 7.2404 -6.2317 -0.5682 16 6 7.9038 -7.5294 -0.6896 17 8 7.2454 -8.5530 -0.6773 18 7 9.2443 -7.5919 -0.8142 19 6 9.9089 -8.8919 -0.9353 20 6 11.3964 -8.6857 -1.0612 21 8 11.8543 -7.5684 -1.0505 22 6 12.3127 -9.8742 -1.1995 23 6 13.6020 -9.8719 -0.3756 24 6 13.6605 -9.6507 -1.8884 25 6 5.9863 -3.6861 -0.3341 26 6 5.3569 -2.4669 -0.2311 27 1 -0.4850 0.8400 -0.0004 28 1 2.1426 -3.5206 0.0023 29 1 3.2505 -5.7037 -0.1923 30 1 5.3131 -7.0772 -0.4327 31 1 7.8247 -5.3234 -0.5787 32 1 9.7692 -6.7762 -0.8237 33 1 9.6985 -9.4914 -0.0496 34 1 9.5379 -9.4086 -1.8204 35 1 11.8188 -10.8326 -1.3590 36 1 13.7876 -9.0106 0.2661 37 1 13.9563 -10.8289 0.0072 38 1 14.0533 -10.4623 -2.5008 39 1 13.8842 -8.6443 -2.2419 40 1 7.0615 -3.7338 -0.4252 41 1 5.9387 -1.5571 -0.2411 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179604181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:06 Heat of formation + Delta-G solvation = -50.602728 kcal Electronic energy + Delta-G solvation = -23477.289581 eV Core-core repulsion = 19709.653946 eV Total energy + Delta-G solvation = -3767.635635 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.38332 -40.97039 -40.29536 -38.61251 -37.17213 -35.54063 -34.77563 -34.20231 -32.01996 -30.69996 -29.35360 -27.43419 -25.39113 -23.96742 -23.66880 -23.35079 -21.97902 -21.02687 -20.32331 -19.69170 -19.16978 -18.49996 -17.51709 -17.26380 -16.74381 -16.67597 -16.36647 -15.86410 -15.77870 -15.61938 -15.48212 -15.38891 -15.09808 -14.53993 -14.37004 -14.25434 -14.05958 -13.68416 -13.56353 -13.37472 -13.19635 -12.73763 -12.64370 -12.45980 -12.36998 -11.94773 -11.61407 -11.50982 -11.31571 -11.16943 -11.15574 -10.78087 -10.69215 -10.22741 -9.92865 -8.75946 -8.54255 -6.26002 -0.30684 0.54124 0.67989 1.08177 1.31986 1.36527 1.51661 2.04473 2.25650 2.30807 2.79389 2.83125 2.87808 2.99396 3.14242 3.73910 3.76785 3.91261 3.94977 4.03522 4.04898 4.20991 4.27106 4.32016 4.36728 4.42355 4.47912 4.62372 4.72873 4.82588 4.93149 5.02305 5.10117 5.18471 5.18546 5.25067 5.31930 5.37380 5.56957 5.69660 5.78889 5.82540 6.13421 6.32218 6.46469 6.78921 7.17126 7.50049 8.56520 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.034730 B = 0.001790 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.030555 B =15641.697563 C =16359.749418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.405 4.405 8 H 0.085 0.915 9 O -0.233 6.233 10 C 0.137 3.863 11 C -0.243 4.243 12 C -0.043 4.043 13 C -0.162 4.162 14 C 0.017 3.983 15 C -0.244 4.244 16 C 0.554 3.446 17 O -0.587 6.587 18 N -0.720 5.720 19 C 0.071 3.929 20 C 0.387 3.613 21 O -0.483 6.483 22 C -0.225 4.225 23 C -0.146 4.146 24 C -0.152 4.152 25 C -0.041 4.041 26 C -0.195 4.195 27 H 0.287 0.713 28 H 0.115 0.885 29 H 0.142 0.858 30 H 0.127 0.873 31 H 0.151 0.849 32 H 0.415 0.585 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.155 0.845 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.163 0.837 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.737 -19.348 -2.411 33.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.480 4.480 8 H 0.102 0.898 9 O -0.140 6.140 10 C 0.086 3.914 11 C -0.262 4.262 12 C -0.061 4.061 13 C -0.163 4.163 14 C -0.003 4.003 15 C -0.265 4.265 16 C 0.346 3.654 17 O -0.469 6.469 18 N -0.373 5.373 19 C -0.053 4.053 20 C 0.265 3.735 21 O -0.358 6.358 22 C -0.244 4.244 23 C -0.182 4.182 24 C -0.189 4.189 25 C -0.059 4.059 26 C -0.214 4.214 27 H 0.096 0.904 28 H 0.133 0.867 29 H 0.159 0.841 30 H 0.145 0.855 31 H 0.168 0.832 32 H 0.253 0.747 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.173 0.827 36 H 0.107 0.893 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.107 0.893 40 H 0.181 0.819 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 26.436 -19.124 -2.375 32.715 hybrid contribution -0.577 1.025 0.047 1.177 sum 25.860 -18.099 -2.328 31.650 Atomic orbital electron populations 1.69697 1.06994 1.29854 1.49015 1.25310 0.95867 1.02242 0.95176 0.85221 0.78903 0.77283 0.79369 1.19007 1.19213 1.18458 1.20770 0.77909 0.96342 1.53028 0.89757 1.83464 1.21490 1.27561 1.81439 1.19936 0.93303 0.85017 0.93131 1.21232 1.00583 0.92904 1.11497 1.21301 0.94122 0.96719 0.93978 1.18823 0.92912 0.93184 1.11349 1.22189 0.94518 0.95359 0.88206 1.22739 0.95560 0.96704 1.11500 1.18449 0.81897 0.89736 0.75317 1.90786 1.65569 1.37662 1.52907 1.45644 1.06754 1.10224 1.74672 1.21773 0.90692 0.87024 1.05839 1.24142 0.90838 0.89390 0.69120 1.90398 1.78976 1.28024 1.38446 1.22834 0.90855 1.00130 1.10571 1.23064 0.95983 1.04851 0.94349 1.23063 0.95706 1.04139 0.95990 1.21351 1.00616 0.89722 0.94178 1.20482 0.90403 0.99941 1.10563 0.90367 0.86743 0.84070 0.85471 0.83189 0.74713 0.86806 0.86812 0.82708 0.89284 0.85338 0.85554 0.89330 0.81948 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.51 13.96 21.62 0.30 -53.21 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 0.97 44.08 28.62 68.60 1.96 46.04 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.40 -23.19 9.94 67.93 0.68 -22.51 16 8 H 0.08 5.06 5.41 -2.91 -0.02 5.04 16 9 O -0.23 -12.23 8.57 -20.35 -0.17 -12.40 16 10 C 0.14 6.13 6.66 22.72 0.15 6.28 16 11 C -0.24 -10.32 9.14 22.34 0.20 -10.11 16 12 C -0.04 -1.47 9.78 22.55 0.22 -1.25 16 13 C -0.16 -4.84 5.87 -20.13 -0.12 -4.96 16 14 C 0.02 0.44 9.45 23.82 0.23 0.66 16 15 C -0.24 -5.39 9.41 23.61 0.22 -5.17 16 16 C 0.55 13.04 7.74 86.32 0.67 13.71 16 17 O -0.59 -17.62 16.23 -4.39 -0.07 -17.69 16 18 N -0.72 -12.80 5.52 -471.24 -2.60 -15.41 16 19 C 0.07 0.94 6.09 85.63 0.52 1.46 16 20 C 0.39 4.91 6.99 29.10 0.20 5.11 16 21 O -0.48 -9.10 15.74 -1.43 -0.02 -9.12 16 22 C -0.22 -1.65 6.13 -11.54 -0.07 -1.72 16 23 C -0.15 -0.98 10.14 30.60 0.31 -0.67 16 24 C -0.15 -1.11 10.05 30.60 0.31 -0.80 16 25 C -0.04 -1.18 9.40 22.55 0.21 -0.97 16 26 C -0.19 -6.97 9.97 22.34 0.22 -6.74 16 27 H 0.29 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.11 5.33 5.62 -2.91 -0.02 5.32 16 29 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.13 3.30 7.52 -2.91 -0.02 3.28 16 31 H 0.15 2.54 6.07 -2.91 -0.02 2.53 16 32 H 0.41 6.63 7.42 -92.71 -0.69 5.94 16 33 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.16 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.09 0.96 7.89 -2.39 -0.02 0.94 16 40 H 0.16 3.30 6.16 -2.91 -0.02 3.28 16 41 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -71.27 361.58 4.21 -67.06 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.39 Total: 21.16 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 4.42 Total: -26.43 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -2.30 Total: -68.61 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.27 Total: -39.21 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.96 Total: 46.04 kcal Total: -71.27 4.21 -67.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179604181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.459 kcal (2) G-P(sol) polarization free energy of solvation -71.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds