Wall clock time and date at job start Tue Mar 31 2020 11:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52994 * 110.01824 * 38.08057 * 3 2 1 5 5 O 1.45197 * 109.47371 * 59.29708 * 4 3 2 6 6 C 1.34759 * 116.99710 * 180.02562 * 5 4 3 7 7 O 1.21511 * 120.00523 * 359.97438 * 6 5 4 8 8 C 1.47395 * 119.99834 * 179.97438 * 6 5 4 9 9 C 1.39727 * 120.20571 * 0.02664 * 8 6 5 10 10 C 1.37802 * 119.92004 * 179.97438 * 9 8 6 11 11 C 1.38587 * 120.32966 * 359.97438 * 10 9 8 12 12 C 1.38025 * 120.41352 * 0.02562 * 11 10 9 13 13 C 1.38827 * 120.07760 * 359.97438 * 12 11 10 14 14 O 1.35508 * 120.16804 * 180.02562 * 13 12 11 15 15 C 1.34813 * 116.99844 * 354.39155 * 14 13 12 16 16 H 1.08005 * 120.00212 * 5.05817 * 15 14 13 17 17 C 1.38703 * 120.00237 * 185.05461 * 15 14 13 18 18 N 1.31513 * 119.99934 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99919 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47199 * 89.99539 * 19 17 15 21 21 H 1.48496 * 109.47347 * 209.99915 * 19 17 15 22 22 H 1.48505 * 109.47096 * 330.00153 * 19 17 15 23 23 C 1.54269 * 110.02830 * 159.46805 * 3 2 1 24 24 C 1.54966 * 104.15935 * 95.75592 * 23 3 2 25 25 C 1.54886 * 102.77923 * 37.88511 * 24 23 3 26 26 C 1.53874 * 110.03423 * 276.68214 * 3 2 1 27 27 H 1.09003 * 109.46876 * 299.29534 * 4 3 2 28 28 H 1.08997 * 109.47162 * 179.29970 * 4 3 2 29 29 H 1.08001 * 120.04031 * 359.97438 * 9 8 6 30 30 H 1.08002 * 119.83760 * 180.02562 * 10 9 8 31 31 H 1.07998 * 119.79609 * 180.27526 * 11 10 9 32 32 H 1.07998 * 119.96128 * 180.02562 * 12 11 10 33 33 H 0.97006 * 119.99605 * 179.97438 * 18 17 15 34 34 H 1.09004 * 110.48891 * 214.40034 * 23 3 2 35 35 H 1.09001 * 110.48778 * 337.04565 * 23 3 2 36 36 H 1.09004 * 110.71692 * 279.56702 * 24 23 3 37 37 H 1.09000 * 110.76593 * 156.22475 * 24 23 3 38 38 H 1.08995 * 110.48603 * 203.40443 * 25 24 23 39 39 H 1.09000 * 110.48817 * 80.76145 * 25 24 23 40 40 H 1.09005 * 110.03025 * 359.95794 * 26 3 2 41 41 H 1.08999 * 110.03257 * 121.37979 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1323 -1.1306 -0.8866 5 8 2.6412 -0.9512 -2.2412 6 6 3.0138 -1.8701 -3.1537 7 8 3.7299 -2.7957 -2.8266 8 6 2.5528 -1.7525 -4.5487 9 6 1.7297 -0.6897 -4.9298 10 6 1.3025 -0.5851 -6.2358 11 6 1.6856 -1.5293 -7.1751 12 6 2.4983 -2.5847 -6.8137 13 6 2.9386 -2.7066 -5.5027 14 8 3.7370 -3.7418 -5.1460 15 6 3.9736 -4.6829 -6.0818 16 1 3.6018 -4.5504 -7.0871 17 6 4.6948 -5.8214 -5.7536 18 7 4.9251 -6.7397 -6.6664 19 14 5.3374 -6.0510 -4.0147 20 1 4.3194 -6.7625 -3.2007 21 1 6.5888 -6.8496 -4.0509 22 1 5.6148 -4.7232 -3.4102 23 6 3.1358 1.3582 -0.5083 24 6 3.4068 2.1679 0.7849 25 6 3.9660 1.0938 1.7507 26 6 3.1353 -0.1673 1.4358 27 1 2.7846 -2.0878 -0.4978 28 1 4.2221 -1.1142 -0.8901 29 1 1.4286 0.0490 -4.2017 30 1 0.6666 0.2372 -6.5290 31 1 1.3494 -1.4365 -8.1972 32 1 2.7927 -3.3161 -7.5517 33 1 5.4298 -7.5358 -6.4369 34 1 4.0581 1.2218 -1.0731 35 1 2.3829 1.8554 -1.1199 36 1 2.4820 2.5937 1.1742 37 1 4.1465 2.9479 0.6046 38 1 3.8189 1.3987 2.7867 39 1 5.0224 0.9143 1.5512 40 1 2.3011 -0.2486 2.1327 41 1 3.7645 -1.0549 1.5010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183868798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:14 Heat of formation + Delta-G solvation = -66.658066 kcal Electronic energy + Delta-G solvation = -25779.091680 eV Core-core repulsion = 22010.759834 eV Total energy + Delta-G solvation = -3768.331847 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -40.35680 -39.50550 -38.59715 -36.64808 -35.92463 -35.73044 -32.56061 -31.46873 -30.54938 -29.29058 -29.20411 -25.82797 -25.25575 -23.37753 -22.09326 -21.58111 -21.10577 -20.36837 -18.02946 -17.81831 -17.64414 -16.79573 -16.34349 -15.85095 -15.46108 -14.96046 -14.76304 -14.24589 -14.13265 -14.06984 -13.80871 -13.74293 -13.52451 -13.37597 -13.03403 -12.62216 -12.44619 -12.25142 -12.18825 -11.68049 -11.53947 -11.50517 -11.45290 -11.35296 -11.30095 -11.11435 -10.93793 -10.86553 -10.80084 -10.38101 -10.15442 -9.92205 -9.44526 -8.98283 -8.48652 -7.59031 -6.56691 -4.22018 1.39903 2.13996 2.57393 2.65815 2.96630 3.19449 3.24336 3.30499 3.55432 3.59170 4.16527 4.20690 4.25191 4.39229 4.43717 4.62399 4.78523 4.94461 4.99575 5.02957 5.10742 5.22062 5.27020 5.36089 5.42764 5.45167 5.50248 5.56146 5.64594 5.69549 5.75096 5.84045 5.92418 5.96675 5.98768 6.32032 6.49685 6.70080 6.79947 7.00879 7.08568 7.40733 7.45408 7.60511 7.84711 8.40171 8.77620 9.38184 10.48096 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.004094 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.743342 B = 6837.109778 C = 8279.667267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.222 3.778 3 C 0.036 3.964 4 C 0.080 3.920 5 O -0.361 6.361 6 C 0.508 3.492 7 O -0.492 6.492 8 C -0.216 4.216 9 C -0.017 4.017 10 C -0.225 4.225 11 C -0.042 4.042 12 C -0.228 4.228 13 C 0.204 3.796 14 O -0.166 6.166 15 C -0.397 4.397 16 H 0.111 0.889 17 C 0.073 3.927 18 N -0.865 5.865 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.239 1.239 23 C -0.107 4.107 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.111 4.111 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.141 0.859 33 H 0.283 0.717 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 15.917 12.317 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.096 4.096 3 C 0.033 3.967 4 C 0.004 3.996 5 O -0.280 6.280 6 C 0.354 3.646 7 O -0.380 6.380 8 C -0.219 4.219 9 C -0.035 4.035 10 C -0.244 4.244 11 C -0.061 4.061 12 C -0.247 4.247 13 C 0.146 3.854 14 O -0.066 6.066 15 C -0.472 4.472 16 H 0.128 0.872 17 C -0.134 4.134 18 N -0.500 5.500 19 Si 0.724 3.276 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.162 1.162 23 C -0.146 4.146 24 C -0.166 4.166 25 C -0.161 4.161 26 C -0.150 4.150 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.143 0.857 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.159 0.841 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.377 15.306 12.605 19.970 hybrid contribution 0.642 -0.498 0.437 0.923 sum -1.735 14.808 13.042 19.809 Atomic orbital electron populations 1.81197 1.12543 1.08087 1.08513 1.28712 0.94476 0.93427 0.93015 1.19016 0.82358 0.98088 0.97253 1.23018 0.99872 0.97142 0.79544 1.86537 1.70369 1.51910 1.19153 1.21050 0.78251 0.79489 0.85784 1.90919 1.34742 1.31983 1.80331 1.18012 1.12591 1.02328 0.88980 1.20954 0.92268 0.94332 0.95989 1.20619 1.07750 1.02371 0.93645 1.21044 0.93820 0.92550 0.98654 1.21240 1.05075 1.02175 0.96229 1.18971 0.87650 0.87284 0.91491 1.83742 1.54214 1.28351 1.40279 1.20950 1.36198 0.97575 0.92437 0.87215 1.24512 0.95364 0.93586 0.99895 1.69632 1.37306 1.08816 1.34220 0.86210 0.78167 0.80545 0.82656 1.19830 1.21007 1.16226 1.22503 1.02351 0.91758 0.97970 1.22594 1.01305 0.97777 0.94908 1.22384 0.99832 0.94029 0.99818 1.22233 1.00553 1.00274 0.91936 0.90555 0.89092 0.85703 0.86721 0.86576 0.84142 0.90659 0.89093 0.90251 0.91338 0.90563 0.90917 0.90612 0.90377 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.51 18.54 42.15 0.78 -5.72 16 2 C 0.22 2.79 13.15 -20.76 -0.27 2.52 16 3 C 0.04 0.35 0.68 -156.18 -0.11 0.24 16 4 C 0.08 0.99 3.95 37.15 0.15 1.14 16 5 O -0.36 -5.75 8.81 -40.65 -0.36 -6.11 16 6 C 0.51 10.23 7.89 34.46 0.27 10.50 16 7 O -0.49 -11.51 14.96 -26.59 -0.40 -11.91 16 8 C -0.22 -4.44 5.89 -104.83 -0.62 -5.06 16 9 C -0.02 -0.29 9.61 -39.19 -0.38 -0.67 16 10 C -0.22 -3.56 10.02 -39.61 -0.40 -3.96 16 11 C -0.04 -0.71 10.03 -39.53 -0.40 -1.11 16 12 C -0.23 -4.70 9.16 -39.44 -0.36 -5.06 16 13 C 0.20 4.71 6.66 -38.58 -0.26 4.46 16 14 O -0.17 -4.43 6.67 -21.02 -0.14 -4.57 16 15 C -0.40 -11.03 9.95 30.90 0.31 -10.72 16 16 H 0.11 3.03 5.44 -52.48 -0.29 2.75 16 17 C 0.07 2.03 5.49 -17.52 -0.10 1.93 16 18 N -0.86 -24.49 13.96 55.48 0.77 -23.71 16 19 Si 0.90 22.31 28.62 -169.99 -4.86 17.45 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.24 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.11 -0.87 5.62 -25.03 -0.14 -1.01 16 24 C -0.13 -0.78 6.91 -24.70 -0.17 -0.95 16 25 C -0.12 -0.68 6.83 -25.08 -0.17 -0.85 16 26 C -0.11 -0.77 6.09 -25.61 -0.16 -0.93 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 29 H 0.13 1.83 7.61 -52.49 -0.40 1.43 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.14 2.97 5.64 -52.49 -0.30 2.68 16 33 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.09 0.71 7.84 -51.93 -0.41 0.30 16 35 H 0.08 0.69 7.82 -51.93 -0.41 0.29 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.54 7.66 -51.93 -0.40 0.14 16 41 H 0.09 0.53 7.67 -51.93 -0.40 0.13 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -32.40 353.74 -6.77 -39.18 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.11 Total: -0.42 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -2.79 Total: -9.52 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 1.56 Total: -29.44 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.90 Total: -22.58 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.86 Total: 17.45 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.40 -6.77 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183868798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.479 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds