Wall clock time and date at job start Tue Mar 31 2020 11:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52994 * 110.01824 * 38.08057 * 3 2 1 5 5 O 1.45197 * 109.47371 * 59.29708 * 4 3 2 6 6 C 1.34759 * 116.99710 * 180.02562 * 5 4 3 7 7 O 1.21511 * 120.00523 * 359.97438 * 6 5 4 8 8 C 1.47395 * 119.99834 * 179.97438 * 6 5 4 9 9 C 1.39727 * 120.20571 * 0.02664 * 8 6 5 10 10 C 1.37802 * 119.92004 * 179.97438 * 9 8 6 11 11 C 1.38587 * 120.32966 * 359.97438 * 10 9 8 12 12 C 1.38025 * 120.41352 * 0.02562 * 11 10 9 13 13 C 1.38827 * 120.07760 * 359.97438 * 12 11 10 14 14 O 1.35508 * 120.16804 * 180.02562 * 13 12 11 15 15 C 1.34813 * 116.99844 * 354.39155 * 14 13 12 16 16 H 1.08005 * 120.00212 * 5.05817 * 15 14 13 17 17 C 1.38703 * 120.00237 * 185.05461 * 15 14 13 18 18 N 1.31513 * 119.99934 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99919 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47199 * 89.99539 * 19 17 15 21 21 H 1.48496 * 109.47347 * 209.99915 * 19 17 15 22 22 H 1.48505 * 109.47096 * 330.00153 * 19 17 15 23 23 C 1.54269 * 110.02830 * 159.46805 * 3 2 1 24 24 C 1.54966 * 104.15935 * 95.75592 * 23 3 2 25 25 C 1.54886 * 102.77923 * 37.88511 * 24 23 3 26 26 C 1.53874 * 110.03423 * 276.68214 * 3 2 1 27 27 H 1.09003 * 109.46876 * 299.29534 * 4 3 2 28 28 H 1.08997 * 109.47162 * 179.29970 * 4 3 2 29 29 H 1.08001 * 120.04031 * 359.97438 * 9 8 6 30 30 H 1.08002 * 119.83760 * 180.02562 * 10 9 8 31 31 H 1.07998 * 119.79609 * 180.27526 * 11 10 9 32 32 H 1.07998 * 119.96128 * 180.02562 * 12 11 10 33 33 H 0.97006 * 119.99605 * 179.97438 * 18 17 15 34 34 H 1.09004 * 110.48891 * 214.40034 * 23 3 2 35 35 H 1.09001 * 110.48778 * 337.04565 * 23 3 2 36 36 H 1.09004 * 110.71692 * 279.56702 * 24 23 3 37 37 H 1.09000 * 110.76593 * 156.22475 * 24 23 3 38 38 H 1.08995 * 110.48603 * 203.40443 * 25 24 23 39 39 H 1.09000 * 110.48817 * 80.76145 * 25 24 23 40 40 H 1.09005 * 110.03025 * 359.95794 * 26 3 2 41 41 H 1.08999 * 110.03257 * 121.37979 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1323 -1.1306 -0.8866 5 8 2.6412 -0.9512 -2.2412 6 6 3.0138 -1.8701 -3.1537 7 8 3.7299 -2.7957 -2.8266 8 6 2.5528 -1.7525 -4.5487 9 6 1.7297 -0.6897 -4.9298 10 6 1.3025 -0.5851 -6.2358 11 6 1.6856 -1.5293 -7.1751 12 6 2.4983 -2.5847 -6.8137 13 6 2.9386 -2.7066 -5.5027 14 8 3.7370 -3.7418 -5.1460 15 6 3.9736 -4.6829 -6.0818 16 1 3.6018 -4.5504 -7.0871 17 6 4.6948 -5.8214 -5.7536 18 7 4.9251 -6.7397 -6.6664 19 14 5.3374 -6.0510 -4.0147 20 1 4.3194 -6.7625 -3.2007 21 1 6.5888 -6.8496 -4.0509 22 1 5.6148 -4.7232 -3.4102 23 6 3.1358 1.3582 -0.5083 24 6 3.4068 2.1679 0.7849 25 6 3.9660 1.0938 1.7507 26 6 3.1353 -0.1673 1.4358 27 1 2.7846 -2.0878 -0.4978 28 1 4.2221 -1.1142 -0.8901 29 1 1.4286 0.0490 -4.2017 30 1 0.6666 0.2372 -6.5290 31 1 1.3494 -1.4365 -8.1972 32 1 2.7927 -3.3161 -7.5517 33 1 5.4298 -7.5358 -6.4369 34 1 4.0581 1.2218 -1.0731 35 1 2.3829 1.8554 -1.1199 36 1 2.4820 2.5937 1.1742 37 1 4.1465 2.9479 0.6046 38 1 3.8189 1.3987 2.7867 39 1 5.0224 0.9143 1.5512 40 1 2.3011 -0.2486 2.1327 41 1 3.7645 -1.0549 1.5010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183868798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:13 Heat of formation + Delta-G solvation = -84.073653 kcal Electronic energy + Delta-G solvation = -25779.846877 eV Core-core repulsion = 22010.759834 eV Total energy + Delta-G solvation = -3769.087043 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76261 -40.80073 -39.85525 -38.27599 -37.20096 -36.89778 -34.55682 -32.67346 -31.68330 -30.88128 -29.76762 -27.47352 -26.59151 -24.77807 -23.18846 -22.85807 -22.06886 -21.44238 -19.90360 -19.41349 -18.70898 -18.26627 -17.55965 -17.16529 -16.63334 -16.27025 -15.98879 -15.80716 -15.64098 -15.49477 -15.11502 -14.90902 -14.57587 -14.40580 -14.38561 -14.12045 -14.00583 -13.75210 -13.35802 -13.14653 -12.88724 -12.62710 -12.48969 -12.41427 -12.17666 -12.03109 -12.01928 -11.98462 -11.89991 -11.66562 -11.58020 -11.38006 -11.16749 -10.99029 -9.99951 -9.24626 -8.59760 -6.30161 -0.13893 0.59155 1.26278 1.31058 1.48326 1.56820 1.63475 1.67350 1.74585 2.27649 2.69403 2.71232 2.89894 3.07750 3.44259 3.50111 3.62956 3.93860 4.01189 4.11512 4.20058 4.27708 4.37802 4.44263 4.45484 4.51820 4.56719 4.59535 4.75411 4.81265 4.94020 5.02706 5.09483 5.16533 5.22174 5.25922 5.30850 5.33161 5.45989 5.51647 5.56528 5.66704 5.79576 6.08591 6.45730 6.74866 6.87103 7.49425 8.50090 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.004094 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.743342 B = 6837.109778 C = 8279.667267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.239 3.761 3 C 0.042 3.958 4 C 0.071 3.929 5 O -0.350 6.350 6 C 0.511 3.489 7 O -0.530 6.530 8 C -0.226 4.226 9 C -0.013 4.013 10 C -0.195 4.195 11 C -0.029 4.029 12 C -0.249 4.249 13 C 0.172 3.828 14 O -0.206 6.206 15 C -0.406 4.406 16 H 0.095 0.905 17 C 0.027 3.973 18 N -0.907 5.907 19 Si 0.953 3.047 20 H -0.277 1.277 21 H -0.264 1.264 22 H -0.259 1.259 23 C -0.109 4.109 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.110 4.110 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.156 0.844 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.123 0.877 33 H 0.287 0.713 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 19.433 13.472 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.078 4.078 3 C 0.039 3.961 4 C -0.004 4.004 5 O -0.268 6.268 6 C 0.358 3.642 7 O -0.420 6.420 8 C -0.228 4.228 9 C -0.031 4.031 10 C -0.213 4.213 11 C -0.047 4.047 12 C -0.268 4.268 13 C 0.119 3.881 14 O -0.109 6.109 15 C -0.482 4.482 16 H 0.112 0.888 17 C -0.174 4.174 18 N -0.546 5.546 19 Si 0.777 3.223 20 H -0.202 1.202 21 H -0.189 1.189 22 H -0.183 1.183 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.156 4.156 26 C -0.149 4.149 27 H 0.087 0.913 28 H 0.124 0.876 29 H 0.174 0.826 30 H 0.182 0.818 31 H 0.175 0.825 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.218 18.883 13.767 23.589 hybrid contribution 0.618 -1.160 0.093 1.318 sum -2.599 17.722 13.860 22.648 Atomic orbital electron populations 1.81209 1.14077 1.09709 1.10200 1.29271 0.95017 0.91969 0.91557 1.19256 0.80470 0.97979 0.98424 1.23412 1.01022 0.98200 0.77773 1.86506 1.69823 1.50159 1.20314 1.21097 0.77386 0.79313 0.86365 1.90908 1.36403 1.33659 1.81076 1.18439 1.12743 1.02564 0.89095 1.21381 0.90771 0.93450 0.97530 1.21251 1.05508 1.02190 0.92371 1.21526 0.91447 0.90684 1.01025 1.21325 1.06705 1.03676 0.95126 1.19626 0.88070 0.87165 0.93280 1.83725 1.57447 1.29695 1.40065 1.20910 1.36454 0.98474 0.92352 0.88770 1.25083 0.96107 0.93659 1.02507 1.69679 1.39768 1.09775 1.35422 0.85444 0.78284 0.79355 0.79250 1.20215 1.18870 1.18260 1.22567 1.02229 0.90828 0.99084 1.22589 1.01739 0.98036 0.93739 1.22405 1.00010 0.92698 1.00439 1.22312 1.01002 1.01796 0.89747 0.91282 0.87566 0.82631 0.81755 0.82540 0.85888 0.90296 0.88476 0.90926 0.91573 0.89022 0.89568 0.89557 0.90215 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.03 18.54 20.01 0.37 -13.66 16 2 C 0.24 5.68 13.15 89.44 1.18 6.86 16 3 C 0.04 0.73 0.68 -53.26 -0.04 0.69 16 4 C 0.07 1.65 3.95 71.98 0.28 1.94 16 5 O -0.35 -10.64 8.81 -56.70 -0.50 -11.14 16 6 C 0.51 20.43 7.89 70.23 0.55 20.99 16 7 O -0.53 -25.33 14.96 26.80 0.40 -24.93 16 8 C -0.23 -9.06 5.89 -20.00 -0.12 -9.18 16 9 C -0.01 -0.40 9.61 22.53 0.22 -0.19 16 10 C -0.20 -5.11 10.02 22.25 0.22 -4.89 16 11 C -0.03 -0.87 10.03 22.30 0.22 -0.64 16 12 C -0.25 -10.28 9.16 22.36 0.20 -10.08 16 13 C 0.17 8.12 6.66 22.92 0.15 8.27 16 14 O -0.21 -11.52 6.67 0.99 0.01 -11.51 16 15 C -0.41 -23.96 9.95 67.93 0.68 -23.28 16 16 H 0.09 5.61 5.44 -2.91 -0.02 5.60 16 17 C 0.03 1.61 5.49 84.85 0.47 2.08 16 18 N -0.91 -53.93 13.96 21.62 0.30 -53.62 16 19 Si 0.95 48.27 28.62 68.60 1.96 50.23 16 20 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.26 -13.74 7.11 99.48 0.71 -13.03 16 23 C -0.11 -1.46 5.62 31.70 0.18 -1.29 16 24 C -0.12 -1.11 6.91 31.91 0.22 -0.89 16 25 C -0.12 -0.90 6.83 31.67 0.22 -0.68 16 26 C -0.11 -1.24 6.09 31.32 0.19 -1.05 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.11 2.21 8.12 -2.39 -0.02 2.19 16 29 H 0.16 3.79 7.61 -2.91 -0.02 3.77 16 30 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.12 5.47 5.64 -2.91 -0.02 5.46 16 33 H 0.29 15.69 8.31 -92.70 -0.77 14.92 16 34 H 0.10 1.22 7.84 -2.39 -0.02 1.20 16 35 H 0.07 1.09 7.82 -2.39 -0.02 1.07 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.08 0.91 7.66 -2.38 -0.02 0.89 16 41 H 0.10 0.94 7.67 -2.39 -0.02 0.92 16 Total: -1.00 -75.90 353.74 8.43 -67.47 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.06 Total: 8.51 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 4.83 Total: -11.34 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: 0.67 Total: -67.28 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -0.09 Total: -47.58 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 1.96 Total: 50.23 kcal Total: -75.90 8.43 -67.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183868798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.605 kcal (2) G-P(sol) polarization free energy of solvation -75.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds