Wall clock time and date at job start Tue Mar 31 2020 10:29:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86795 * 119.99964 * 2 1
4 4 H 1.48499 * 109.47063 * 269.99663 * 3 2 1
5 5 H 1.48503 * 109.47292 * 29.99922 * 3 2 1
6 6 H 1.48506 * 109.47342 * 150.00004 * 3 2 1
7 7 C 1.37883 * 120.00287 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00506 * 180.02562 * 7 2 1
9 9 C 1.50704 * 119.99641 * 0.02562 * 7 2 1
10 10 O 1.42903 * 112.93967 * 309.66332 * 9 7 2
11 11 C 1.53939 * 113.74425 * 81.25316 * 9 7 2
12 12 N 1.47935 * 85.99585 * 138.00446 * 11 9 7
13 13 C 1.34770 * 134.50020 * 155.33740 * 12 11 9
14 14 O 1.21718 * 120.00026 * 180.02562 * 13 12 11
15 15 C 1.46260 * 120.00367 * 0.03558 * 13 12 11
16 16 C 1.34971 * 119.99983 * 180.02562 * 15 13 12
17 17 C 1.47010 * 119.99868 * 179.97438 * 16 15 13
18 18 C 1.39993 * 120.28728 * 359.97438 * 17 16 15
19 19 C 1.37429 * 120.16786 * 180.10810 * 18 17 16
20 20 C 1.39615 * 120.46689 * 359.97438 * 19 18 17
21 21 C 1.39215 * 119.14534 * 359.74134 * 20 19 18
22 22 C 1.37271 * 120.95967 * 0.16094 * 21 20 19
23 23 C 1.51687 * 106.99880 * 180.57258 * 21 20 19
24 24 C 1.54694 * 101.90672 * 15.40453 * 23 21 20
25 25 O 1.36041 * 129.70037 * 179.09235 * 20 19 18
26 26 C 1.47583 * 91.00485 * 335.36053 * 12 11 9
27 27 H 0.96996 * 120.00241 * 0.02562 * 1 2 3
28 28 H 0.96700 * 114.00311 * 50.33748 * 10 9 7
29 29 H 1.08997 * 113.77317 * 252.35938 * 11 9 7
30 30 H 1.09004 * 113.76958 * 23.76220 * 11 9 7
31 31 H 1.08001 * 119.99598 * 359.97438 * 15 13 12
32 32 H 1.08001 * 120.00419 * 359.97438 * 16 15 13
33 33 H 1.07993 * 119.91633 * 0.13678 * 18 17 16
34 34 H 1.08003 * 119.76469 * 179.97438 * 19 18 17
35 35 H 1.08006 * 120.07644 * 179.97438 * 22 21 20
36 36 H 1.09006 * 110.93783 * 133.55266 * 23 21 20
37 37 H 1.08996 * 110.94229 * 257.21063 * 23 21 20
38 38 H 1.08994 * 110.74625 * 92.96207 * 24 23 21
39 39 H 1.09003 * 110.74615 * 216.12010 * 24 23 21
40 40 H 1.08996 * 113.76772 * 270.33752 * 26 12 11
41 41 H 1.08991 * 113.86922 * 138.95154 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0463 -1.4001
5 1 1.4465 2.6527 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 8 0.2447 -2.5613 1.0132
11 6 0.7561 -2.9292 -1.3923
12 7 1.1905 -4.2912 -1.0120
13 6 0.8405 -5.5354 -1.3938
14 8 1.3851 -6.5016 -0.8925
15 6 -0.1937 -5.7247 -2.4106
16 6 -0.5445 -6.9708 -2.7925
17 6 -1.5844 -7.1611 -3.8141
18 6 -2.2150 -6.0541 -4.3944
19 6 -3.1883 -6.2348 -5.3476
20 6 -3.5577 -7.5206 -5.7472
21 6 -2.9235 -8.6180 -5.1714
22 6 -1.9484 -8.4510 -4.2198
23 6 -3.5193 -9.8590 -5.8083
24 6 -4.2338 -9.2701 -7.0476
25 8 -4.4963 -7.9139 -6.6500
26 6 2.1608 -3.7402 -0.0461
27 1 -0.4850 0.8400 -0.0004
28 1 -0.3474 -1.7969 1.0268
29 1 -0.3213 -2.8309 -1.5254
30 1 1.3285 -2.4989 -2.2141
31 1 -0.6771 -4.8674 -2.8551
32 1 -0.0614 -7.8282 -2.3476
33 1 -1.9355 -5.0556 -4.0925
34 1 -3.6709 -5.3762 -5.7907
35 1 -1.4659 -9.3125 -3.7822
36 1 -2.7375 -10.5583 -6.1050
37 1 -4.2328 -10.3371 -5.1371
38 1 -3.5799 -9.2971 -7.9193
39 1 -5.1631 -9.8036 -7.2473
40 1 3.1449 -3.5476 -0.4734
41 1 2.2056 -4.2877 0.8952
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000186827997.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:29:28
Heat of formation + Delta-G solvation = -35.751803 kcal
Electronic energy + Delta-G solvation = -24734.821380 eV
Core-core repulsion = 20967.829729 eV
Total energy + Delta-G solvation = -3766.991651 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.31089 -39.48654 -38.10637 -37.24500 -33.92655 -33.51313 -32.85919 -32.22537
-29.97800 -29.30690 -28.25139 -25.60420 -25.25618 -23.79289 -23.38435 -22.20168
-20.74931 -19.40663 -18.19815 -17.67571 -17.46156 -16.76686 -16.70504 -16.38561
-15.46870 -15.17383 -14.79083 -14.57380 -14.33395 -14.16212 -13.86419 -13.53206
-13.31892 -13.15784 -12.93870 -12.60202 -12.49531 -12.16357 -12.08065 -12.01635
-11.74321 -11.56992 -11.43690 -11.09366 -11.02370 -10.91684 -10.53251 -10.29328
-9.76782 -9.65901 -9.23718 -9.14023 -8.77821 -8.42311 -7.99318 -7.72641
-6.39712 -4.49929 0.54242 1.11373 2.01674 2.96204 3.14202 3.22703
3.26028 3.50146 3.57708 3.91998 4.06512 4.18522 4.23187 4.56092
4.62466 4.70518 4.84400 4.90059 5.00343 5.07321 5.22974 5.32149
5.34246 5.40848 5.44315 5.61491 5.76941 5.95390 6.01878 6.05413
6.10794 6.15978 6.32953 6.34671 6.38837 6.52962 6.62894 6.65692
6.78180 6.91551 7.10126 7.62504 7.81849 8.48355 8.53411 8.77814
9.21245 9.42419 10.67021
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.022291 B = 0.002467 C = 0.002283
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1255.798036 B =11347.410212 C =12261.051177
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.072 3.928
3 Si 0.907 3.093
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.271 1.271
7 C -0.537 4.537
8 H 0.071 0.929
9 C 0.238 3.762
10 O -0.572 6.572
11 C 0.078 3.922
12 N -0.626 5.626
13 C 0.557 3.443
14 O -0.571 6.571
15 C -0.182 4.182
16 C -0.041 4.041
17 C -0.089 4.089
18 C -0.068 4.068
19 C -0.136 4.136
20 C 0.108 3.892
21 C -0.179 4.179
22 C -0.050 4.050
23 C -0.109 4.109
24 C 0.051 3.949
25 O -0.305 6.305
26 C 0.112 3.888
27 H 0.273 0.727
28 H 0.392 0.608
29 H 0.069 0.931
30 H 0.083 0.917
31 H 0.126 0.874
32 H 0.134 0.866
33 H 0.140 0.860
34 H 0.132 0.868
35 H 0.130 0.870
36 H 0.092 0.908
37 H 0.091 0.909
38 H 0.077 0.923
39 H 0.106 0.894
40 H 0.086 0.914
41 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.667 -13.705 -13.336 20.603
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.131 4.131
3 Si 0.734 3.266
4 H -0.203 1.203
5 H -0.209 1.209
6 H -0.196 1.196
7 C -0.575 4.575
8 H 0.090 0.910
9 C 0.197 3.803
10 O -0.384 6.384
11 C -0.045 4.045
12 N -0.358 5.358
13 C 0.349 3.651
14 O -0.454 6.454
15 C -0.203 4.203
16 C -0.061 4.061
17 C -0.089 4.089
18 C -0.086 4.086
19 C -0.155 4.155
20 C 0.063 3.937
21 C -0.180 4.180
22 C -0.068 4.068
23 C -0.146 4.146
24 C -0.024 4.024
25 O -0.218 6.218
26 C -0.010 4.010
27 H 0.083 0.917
28 H 0.246 0.754
29 H 0.088 0.912
30 H 0.101 0.899
31 H 0.144 0.856
32 H 0.152 0.848
33 H 0.157 0.843
34 H 0.150 0.850
35 H 0.148 0.852
36 H 0.110 0.890
37 H 0.109 0.891
38 H 0.095 0.905
39 H 0.124 0.876
40 H 0.104 0.896
41 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -7.506 -14.691 -13.092 21.061
hybrid contribution 0.092 1.339 -0.304 1.376
sum -7.415 -13.352 -13.395 20.315
Atomic orbital electron populations
1.69397 1.06148 1.28168 1.50075 1.25071 0.95034 0.99858 0.93109
0.86339 0.79851 0.82017 0.78352 1.20333 1.20919 1.19553 1.21502
0.93934 0.89931 1.52125 0.91048 1.19847 0.85680 0.91226 0.83591
1.86067 1.47061 1.49842 1.55411 1.24398 1.00117 0.77327 1.02649
1.50176 1.39737 1.04779 1.41094 1.17863 0.83151 0.81869 0.82248
1.90739 1.57266 1.39450 1.57961 1.23004 0.99624 0.98048 0.99605
1.22123 0.93088 0.97866 0.93021 1.18899 0.98581 0.92794 0.98654
1.21228 0.93991 0.99252 0.94101 1.20198 1.00148 0.94034 1.01072
1.19780 0.89247 0.94262 0.90456 1.20654 1.01174 0.94700 1.01498
1.20455 0.94889 0.96694 0.94766 1.21794 1.00258 0.96152 0.96441
1.23831 1.01483 0.80063 0.97015 1.86801 1.46707 1.30657 1.57681
1.23449 0.93314 0.92751 0.91513 0.91693 0.75377 0.91220 0.89883
0.85644 0.84791 0.84273 0.85022 0.85207 0.88971 0.89080 0.90489
0.87572 0.89573 0.91077
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -22.41 11.20 55.43 0.62 -21.79 16
2 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16
3 Si 0.91 19.26 29.54 -169.99 -5.02 14.24 16
4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16
5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16
6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16
7 C -0.54 -13.30 8.61 -34.44 -0.30 -13.59 16
8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16
9 C 0.24 5.66 1.40 -90.85 -0.13 5.54 16
10 O -0.57 -14.64 13.48 -35.23 -0.48 -15.11 16
11 C 0.08 1.65 7.87 -2.77 -0.02 1.63 16
12 N -0.63 -13.38 3.62 -179.73 -0.65 -14.03 16
13 C 0.56 11.57 7.97 -13.04 -0.10 11.47 16
14 O -0.57 -13.34 16.96 5.17 0.09 -13.25 16
15 C -0.18 -3.00 9.20 -37.52 -0.35 -3.34 16
16 C -0.04 -0.59 9.46 -37.19 -0.35 -0.94 16
17 C -0.09 -1.11 5.87 -105.01 -0.62 -1.73 16
18 C -0.07 -0.81 9.39 -39.22 -0.37 -1.17 16
19 C -0.14 -1.54 10.04 -39.36 -0.40 -1.94 16
20 C 0.11 1.24 7.05 -38.71 -0.27 0.97 16
21 C -0.18 -1.87 6.25 -104.12 -0.65 -2.52 16
22 C -0.05 -0.55 9.78 -39.26 -0.38 -0.93 16
23 C -0.11 -0.77 7.12 -26.51 -0.19 -0.96 16
24 C 0.05 0.34 8.00 38.05 0.30 0.65 16
25 O -0.30 -3.28 11.10 -19.87 -0.22 -3.50 16
26 C 0.11 2.45 8.23 -2.97 -0.02 2.43 16
27 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16
28 H 0.39 10.05 6.60 45.56 0.30 10.35 16
29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16
30 H 0.08 1.67 8.09 -51.93 -0.42 1.25 16
31 H 0.13 1.84 5.91 -52.49 -0.31 1.53 16
32 H 0.13 1.94 7.52 -52.49 -0.39 1.54 16
33 H 0.14 1.52 6.17 -52.49 -0.32 1.20 16
34 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16
35 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16
36 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16
37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
39 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16
40 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16
41 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16
LS Contribution 352.32 15.07 5.31 5.31
Total: -1.00 -29.88 352.32 -8.78 -38.66
By element:
Atomic # 1 Polarization: 16.77 SS G_CDS: -4.50 Total: 12.27 kcal
Atomic # 6 Polarization: 1.15 SS G_CDS: -3.94 Total: -2.79 kcal
Atomic # 7 Polarization: -35.79 SS G_CDS: -0.03 Total: -35.82 kcal
Atomic # 8 Polarization: -31.26 SS G_CDS: -0.61 Total: -31.87 kcal
Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal
Total LS contribution 5.31 Total: 5.31 kcal
Total: -29.88 -8.78 -38.66 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186827997.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.909 kcal
(2) G-P(sol) polarization free energy of solvation -29.877 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.968 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.752 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds