Wall clock time and date at job start Tue Mar 31 2020 10:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47063 * 269.99663 * 3 2 1 5 5 H 1.48503 * 109.47292 * 29.99922 * 3 2 1 6 6 H 1.48506 * 109.47342 * 150.00004 * 3 2 1 7 7 C 1.37883 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00506 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99641 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93967 * 309.66332 * 9 7 2 11 11 C 1.53939 * 113.74425 * 81.25316 * 9 7 2 12 12 N 1.47935 * 85.99585 * 138.00446 * 11 9 7 13 13 C 1.34770 * 134.50020 * 155.33740 * 12 11 9 14 14 O 1.21718 * 120.00026 * 180.02562 * 13 12 11 15 15 C 1.46260 * 120.00367 * 0.03558 * 13 12 11 16 16 C 1.34971 * 119.99983 * 180.02562 * 15 13 12 17 17 C 1.47010 * 119.99868 * 179.97438 * 16 15 13 18 18 C 1.39993 * 120.28728 * 359.97438 * 17 16 15 19 19 C 1.37429 * 120.16786 * 180.10810 * 18 17 16 20 20 C 1.39615 * 120.46689 * 359.97438 * 19 18 17 21 21 C 1.39215 * 119.14534 * 359.74134 * 20 19 18 22 22 C 1.37271 * 120.95967 * 0.16094 * 21 20 19 23 23 C 1.51687 * 106.99880 * 180.57258 * 21 20 19 24 24 C 1.54694 * 101.90672 * 15.40453 * 23 21 20 25 25 O 1.36041 * 129.70037 * 179.09235 * 20 19 18 26 26 C 1.47583 * 91.00485 * 335.36053 * 12 11 9 27 27 H 0.96996 * 120.00241 * 0.02562 * 1 2 3 28 28 H 0.96700 * 114.00311 * 50.33748 * 10 9 7 29 29 H 1.08997 * 113.77317 * 252.35938 * 11 9 7 30 30 H 1.09004 * 113.76958 * 23.76220 * 11 9 7 31 31 H 1.08001 * 119.99598 * 359.97438 * 15 13 12 32 32 H 1.08001 * 120.00419 * 359.97438 * 16 15 13 33 33 H 1.07993 * 119.91633 * 0.13678 * 18 17 16 34 34 H 1.08003 * 119.76469 * 179.97438 * 19 18 17 35 35 H 1.08006 * 120.07644 * 179.97438 * 22 21 20 36 36 H 1.09006 * 110.93783 * 133.55266 * 23 21 20 37 37 H 1.08996 * 110.94229 * 257.21063 * 23 21 20 38 38 H 1.08994 * 110.74625 * 92.96207 * 24 23 21 39 39 H 1.09003 * 110.74615 * 216.12010 * 24 23 21 40 40 H 1.08996 * 113.76772 * 270.33752 * 26 12 11 41 41 H 1.08991 * 113.86922 * 138.95154 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.2447 -2.5613 1.0132 11 6 0.7561 -2.9292 -1.3923 12 7 1.1905 -4.2912 -1.0120 13 6 0.8405 -5.5354 -1.3938 14 8 1.3851 -6.5016 -0.8925 15 6 -0.1937 -5.7247 -2.4106 16 6 -0.5445 -6.9708 -2.7925 17 6 -1.5844 -7.1611 -3.8141 18 6 -2.2150 -6.0541 -4.3944 19 6 -3.1883 -6.2348 -5.3476 20 6 -3.5577 -7.5206 -5.7472 21 6 -2.9235 -8.6180 -5.1714 22 6 -1.9484 -8.4510 -4.2198 23 6 -3.5193 -9.8590 -5.8083 24 6 -4.2338 -9.2701 -7.0476 25 8 -4.4963 -7.9139 -6.6500 26 6 2.1608 -3.7402 -0.0461 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3474 -1.7969 1.0268 29 1 -0.3213 -2.8309 -1.5254 30 1 1.3285 -2.4989 -2.2141 31 1 -0.6771 -4.8674 -2.8551 32 1 -0.0614 -7.8282 -2.3476 33 1 -1.9355 -5.0556 -4.0925 34 1 -3.6709 -5.3762 -5.7907 35 1 -1.4659 -9.3125 -3.7822 36 1 -2.7375 -10.5583 -6.1050 37 1 -4.2328 -10.3371 -5.1371 38 1 -3.5799 -9.2971 -7.9193 39 1 -5.1631 -9.8036 -7.2473 40 1 3.1449 -3.5476 -0.4734 41 1 2.2056 -4.2877 0.8952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186827997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:28 Heat of formation + Delta-G solvation = -35.751803 kcal Electronic energy + Delta-G solvation = -24734.821380 eV Core-core repulsion = 20967.829729 eV Total energy + Delta-G solvation = -3766.991651 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31089 -39.48654 -38.10637 -37.24500 -33.92655 -33.51313 -32.85919 -32.22537 -29.97800 -29.30690 -28.25139 -25.60420 -25.25618 -23.79289 -23.38435 -22.20168 -20.74931 -19.40663 -18.19815 -17.67571 -17.46156 -16.76686 -16.70504 -16.38561 -15.46870 -15.17383 -14.79083 -14.57380 -14.33395 -14.16212 -13.86419 -13.53206 -13.31892 -13.15784 -12.93870 -12.60202 -12.49531 -12.16357 -12.08065 -12.01635 -11.74321 -11.56992 -11.43690 -11.09366 -11.02370 -10.91684 -10.53251 -10.29328 -9.76782 -9.65901 -9.23718 -9.14023 -8.77821 -8.42311 -7.99318 -7.72641 -6.39712 -4.49929 0.54242 1.11373 2.01674 2.96204 3.14202 3.22703 3.26028 3.50146 3.57708 3.91998 4.06512 4.18522 4.23187 4.56092 4.62466 4.70518 4.84400 4.90059 5.00343 5.07321 5.22974 5.32149 5.34246 5.40848 5.44315 5.61491 5.76941 5.95390 6.01878 6.05413 6.10794 6.15978 6.32953 6.34671 6.38837 6.52962 6.62894 6.65692 6.78180 6.91551 7.10126 7.62504 7.81849 8.48355 8.53411 8.77814 9.21245 9.42419 10.67021 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.002467 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.798036 B =11347.410212 C =12261.051177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.238 3.762 10 O -0.572 6.572 11 C 0.078 3.922 12 N -0.626 5.626 13 C 0.557 3.443 14 O -0.571 6.571 15 C -0.182 4.182 16 C -0.041 4.041 17 C -0.089 4.089 18 C -0.068 4.068 19 C -0.136 4.136 20 C 0.108 3.892 21 C -0.179 4.179 22 C -0.050 4.050 23 C -0.109 4.109 24 C 0.051 3.949 25 O -0.305 6.305 26 C 0.112 3.888 27 H 0.273 0.727 28 H 0.392 0.608 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 -13.705 -13.336 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.197 3.803 10 O -0.384 6.384 11 C -0.045 4.045 12 N -0.358 5.358 13 C 0.349 3.651 14 O -0.454 6.454 15 C -0.203 4.203 16 C -0.061 4.061 17 C -0.089 4.089 18 C -0.086 4.086 19 C -0.155 4.155 20 C 0.063 3.937 21 C -0.180 4.180 22 C -0.068 4.068 23 C -0.146 4.146 24 C -0.024 4.024 25 O -0.218 6.218 26 C -0.010 4.010 27 H 0.083 0.917 28 H 0.246 0.754 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.506 -14.691 -13.092 21.061 hybrid contribution 0.092 1.339 -0.304 1.376 sum -7.415 -13.352 -13.395 20.315 Atomic orbital electron populations 1.69397 1.06148 1.28168 1.50075 1.25071 0.95034 0.99858 0.93109 0.86339 0.79851 0.82017 0.78352 1.20333 1.20919 1.19553 1.21502 0.93934 0.89931 1.52125 0.91048 1.19847 0.85680 0.91226 0.83591 1.86067 1.47061 1.49842 1.55411 1.24398 1.00117 0.77327 1.02649 1.50176 1.39737 1.04779 1.41094 1.17863 0.83151 0.81869 0.82248 1.90739 1.57266 1.39450 1.57961 1.23004 0.99624 0.98048 0.99605 1.22123 0.93088 0.97866 0.93021 1.18899 0.98581 0.92794 0.98654 1.21228 0.93991 0.99252 0.94101 1.20198 1.00148 0.94034 1.01072 1.19780 0.89247 0.94262 0.90456 1.20654 1.01174 0.94700 1.01498 1.20455 0.94889 0.96694 0.94766 1.21794 1.00258 0.96152 0.96441 1.23831 1.01483 0.80063 0.97015 1.86801 1.46707 1.30657 1.57681 1.23449 0.93314 0.92751 0.91513 0.91693 0.75377 0.91220 0.89883 0.85644 0.84791 0.84273 0.85022 0.85207 0.88971 0.89080 0.90489 0.87572 0.89573 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.41 11.20 55.43 0.62 -21.79 16 2 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 3 Si 0.91 19.26 29.54 -169.99 -5.02 14.24 16 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -13.30 8.61 -34.44 -0.30 -13.59 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.24 5.66 1.40 -90.85 -0.13 5.54 16 10 O -0.57 -14.64 13.48 -35.23 -0.48 -15.11 16 11 C 0.08 1.65 7.87 -2.77 -0.02 1.63 16 12 N -0.63 -13.38 3.62 -179.73 -0.65 -14.03 16 13 C 0.56 11.57 7.97 -13.04 -0.10 11.47 16 14 O -0.57 -13.34 16.96 5.17 0.09 -13.25 16 15 C -0.18 -3.00 9.20 -37.52 -0.35 -3.34 16 16 C -0.04 -0.59 9.46 -37.19 -0.35 -0.94 16 17 C -0.09 -1.11 5.87 -105.01 -0.62 -1.73 16 18 C -0.07 -0.81 9.39 -39.22 -0.37 -1.17 16 19 C -0.14 -1.54 10.04 -39.36 -0.40 -1.94 16 20 C 0.11 1.24 7.05 -38.71 -0.27 0.97 16 21 C -0.18 -1.87 6.25 -104.12 -0.65 -2.52 16 22 C -0.05 -0.55 9.78 -39.26 -0.38 -0.93 16 23 C -0.11 -0.77 7.12 -26.51 -0.19 -0.96 16 24 C 0.05 0.34 8.00 38.05 0.30 0.65 16 25 O -0.30 -3.28 11.10 -19.87 -0.22 -3.50 16 26 C 0.11 2.45 8.23 -2.97 -0.02 2.43 16 27 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 28 H 0.39 10.05 6.60 45.56 0.30 10.35 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.08 1.67 8.09 -51.93 -0.42 1.25 16 31 H 0.13 1.84 5.91 -52.49 -0.31 1.53 16 32 H 0.13 1.94 7.52 -52.49 -0.39 1.54 16 33 H 0.14 1.52 6.17 -52.49 -0.32 1.20 16 34 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 41 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -29.88 352.32 -8.78 -38.66 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -4.50 Total: 12.27 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -3.94 Total: -2.79 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.03 Total: -35.82 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.61 Total: -31.87 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.88 -8.78 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186827997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.909 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds