Wall clock time and date at job start Tue Mar 31 2020 10:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47063 * 269.99663 * 3 2 1 5 5 H 1.48503 * 109.47292 * 29.99922 * 3 2 1 6 6 H 1.48506 * 109.47342 * 150.00004 * 3 2 1 7 7 C 1.37883 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00506 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99641 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93967 * 309.66332 * 9 7 2 11 11 C 1.53939 * 113.74425 * 81.25316 * 9 7 2 12 12 N 1.47935 * 85.99585 * 138.00446 * 11 9 7 13 13 C 1.34770 * 134.50020 * 155.33740 * 12 11 9 14 14 O 1.21718 * 120.00026 * 180.02562 * 13 12 11 15 15 C 1.46260 * 120.00367 * 0.03558 * 13 12 11 16 16 C 1.34971 * 119.99983 * 180.02562 * 15 13 12 17 17 C 1.47010 * 119.99868 * 179.97438 * 16 15 13 18 18 C 1.39993 * 120.28728 * 359.97438 * 17 16 15 19 19 C 1.37429 * 120.16786 * 180.10810 * 18 17 16 20 20 C 1.39615 * 120.46689 * 359.97438 * 19 18 17 21 21 C 1.39215 * 119.14534 * 359.74134 * 20 19 18 22 22 C 1.37271 * 120.95967 * 0.16094 * 21 20 19 23 23 C 1.51687 * 106.99880 * 180.57258 * 21 20 19 24 24 C 1.54694 * 101.90672 * 15.40453 * 23 21 20 25 25 O 1.36041 * 129.70037 * 179.09235 * 20 19 18 26 26 C 1.47583 * 91.00485 * 335.36053 * 12 11 9 27 27 H 0.96996 * 120.00241 * 0.02562 * 1 2 3 28 28 H 0.96700 * 114.00311 * 50.33748 * 10 9 7 29 29 H 1.08997 * 113.77317 * 252.35938 * 11 9 7 30 30 H 1.09004 * 113.76958 * 23.76220 * 11 9 7 31 31 H 1.08001 * 119.99598 * 359.97438 * 15 13 12 32 32 H 1.08001 * 120.00419 * 359.97438 * 16 15 13 33 33 H 1.07993 * 119.91633 * 0.13678 * 18 17 16 34 34 H 1.08003 * 119.76469 * 179.97438 * 19 18 17 35 35 H 1.08006 * 120.07644 * 179.97438 * 22 21 20 36 36 H 1.09006 * 110.93783 * 133.55266 * 23 21 20 37 37 H 1.08996 * 110.94229 * 257.21063 * 23 21 20 38 38 H 1.08994 * 110.74625 * 92.96207 * 24 23 21 39 39 H 1.09003 * 110.74615 * 216.12010 * 24 23 21 40 40 H 1.08996 * 113.76772 * 270.33752 * 26 12 11 41 41 H 1.08991 * 113.86922 * 138.95154 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.2447 -2.5613 1.0132 11 6 0.7561 -2.9292 -1.3923 12 7 1.1905 -4.2912 -1.0120 13 6 0.8405 -5.5354 -1.3938 14 8 1.3851 -6.5016 -0.8925 15 6 -0.1937 -5.7247 -2.4106 16 6 -0.5445 -6.9708 -2.7925 17 6 -1.5844 -7.1611 -3.8141 18 6 -2.2150 -6.0541 -4.3944 19 6 -3.1883 -6.2348 -5.3476 20 6 -3.5577 -7.5206 -5.7472 21 6 -2.9235 -8.6180 -5.1714 22 6 -1.9484 -8.4510 -4.2198 23 6 -3.5193 -9.8590 -5.8083 24 6 -4.2338 -9.2701 -7.0476 25 8 -4.4963 -7.9139 -6.6500 26 6 2.1608 -3.7402 -0.0461 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3474 -1.7969 1.0268 29 1 -0.3213 -2.8309 -1.5254 30 1 1.3285 -2.4989 -2.2141 31 1 -0.6771 -4.8674 -2.8551 32 1 -0.0614 -7.8282 -2.3476 33 1 -1.9355 -5.0556 -4.0925 34 1 -3.6709 -5.3762 -5.7907 35 1 -1.4659 -9.3125 -3.7822 36 1 -2.7375 -10.5583 -6.1050 37 1 -4.2328 -10.3371 -5.1371 38 1 -3.5799 -9.2971 -7.9193 39 1 -5.1631 -9.8036 -7.2473 40 1 3.1449 -3.5476 -0.4734 41 1 2.2056 -4.2877 0.8952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186827997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:27 Heat of formation + Delta-G solvation = -54.645710 kcal Electronic energy + Delta-G solvation = -24735.640681 eV Core-core repulsion = 20967.829729 eV Total energy + Delta-G solvation = -3767.810952 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.07070 -41.16039 -39.31622 -38.63906 -35.79478 -34.59026 -34.14235 -33.63314 -31.11216 -30.33823 -29.55719 -27.30654 -27.00363 -24.76927 -24.29637 -22.95341 -22.15588 -20.83937 -19.70201 -19.24683 -18.46413 -18.23292 -17.66142 -17.18965 -17.04129 -16.69993 -16.32299 -15.97970 -15.89008 -15.14883 -14.90616 -14.82277 -14.36131 -14.22112 -14.15601 -13.96830 -13.78296 -13.66963 -13.41110 -13.14739 -12.99946 -12.78629 -12.74179 -12.58893 -12.24831 -12.19830 -12.16710 -11.77171 -11.39694 -11.00297 -10.80539 -10.64192 -10.25116 -9.96391 -9.58916 -8.82569 -8.25447 -6.42331 -0.51916 0.28155 0.89896 1.47302 1.51040 1.59923 1.97286 2.20601 2.31027 2.42167 2.77071 2.97161 3.31528 3.47837 3.65473 3.74014 3.87421 3.91323 4.12265 4.15885 4.18129 4.22688 4.35646 4.45640 4.49556 4.60047 4.64049 4.77552 4.80700 4.85919 4.88410 4.90583 4.93354 5.07290 5.15383 5.23638 5.27898 5.43359 5.51283 5.58966 5.73573 5.93939 6.11879 6.63176 6.83444 7.14654 7.31201 7.45022 8.80593 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.002467 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.798036 B =11347.410212 C =12261.051177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.033 3.967 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.219 3.781 10 O -0.586 6.586 11 C 0.093 3.907 12 N -0.631 5.631 13 C 0.552 3.448 14 O -0.606 6.606 15 C -0.215 4.215 16 C -0.003 4.003 17 C -0.114 4.114 18 C -0.068 4.068 19 C -0.149 4.149 20 C 0.103 3.897 21 C -0.186 4.186 22 C -0.046 4.046 23 C -0.106 4.106 24 C 0.044 3.956 25 O -0.322 6.322 26 C 0.110 3.890 27 H 0.276 0.724 28 H 0.388 0.612 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 -14.638 -15.216 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.168 4.168 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.593 4.593 8 H 0.090 0.910 9 C 0.178 3.822 10 O -0.398 6.398 11 C -0.029 4.029 12 N -0.362 5.362 13 C 0.347 3.653 14 O -0.492 6.492 15 C -0.236 4.236 16 C -0.023 4.023 17 C -0.114 4.114 18 C -0.086 4.086 19 C -0.168 4.168 20 C 0.058 3.942 21 C -0.187 4.187 22 C -0.064 4.064 23 C -0.142 4.142 24 C -0.030 4.030 25 O -0.236 6.236 26 C -0.012 4.012 27 H 0.085 0.915 28 H 0.242 0.758 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.260 -15.633 -14.989 23.179 hybrid contribution 0.200 1.471 0.185 1.496 sum -8.061 -14.161 -14.804 22.015 Atomic orbital electron populations 1.69461 1.07048 1.28908 1.50123 1.25739 0.95788 1.02531 0.92700 0.85395 0.78471 0.78365 0.78424 1.19648 1.20926 1.19632 1.21707 0.94127 0.90712 1.52800 0.91011 1.20121 0.85863 0.91768 0.84476 1.86054 1.47504 1.49710 1.56549 1.24195 1.00209 0.77059 1.01442 1.50190 1.39747 1.05193 1.41118 1.18509 0.83396 0.80993 0.82431 1.90703 1.58770 1.40181 1.59542 1.22770 1.00607 0.99519 1.00677 1.22243 0.91645 0.96938 0.91467 1.18861 0.99212 0.93969 0.99386 1.21333 0.93914 0.99405 0.93981 1.20378 1.00338 0.94861 1.01223 1.20059 0.89087 0.94661 0.90438 1.21045 1.00560 0.96172 1.00951 1.20680 0.94679 0.96609 0.94438 1.21913 1.00911 0.95082 0.96339 1.24185 1.03257 0.78276 0.97263 1.86786 1.46587 1.32834 1.57393 1.23457 0.94119 0.92032 0.91593 0.91465 0.75830 0.91156 0.88771 0.84194 0.84993 0.83862 0.83898 0.83302 0.86849 0.87939 0.89245 0.84959 0.87870 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.62 11.20 21.45 0.24 -45.38 16 2 C 0.03 1.62 5.39 84.66 0.46 2.08 16 3 Si 0.97 39.07 29.54 68.60 2.03 41.10 16 4 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.56 -27.56 8.61 25.60 0.22 -27.33 16 8 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 9 C 0.22 10.53 1.40 -10.88 -0.02 10.52 16 10 O -0.59 -30.70 13.48 -148.98 -2.01 -32.71 16 11 C 0.09 3.97 7.87 86.41 0.68 4.65 16 12 N -0.63 -27.33 3.62 -844.58 -3.05 -30.38 16 13 C 0.55 23.29 7.97 86.33 0.69 23.98 16 14 O -0.61 -28.87 16.96 -4.41 -0.07 -28.95 16 15 C -0.22 -7.09 9.20 23.60 0.22 -6.87 16 16 C 0.00 -0.08 9.46 23.82 0.23 0.14 16 17 C -0.11 -2.72 5.87 -20.12 -0.12 -2.84 16 18 C -0.07 -1.57 9.39 22.50 0.21 -1.36 16 19 C -0.15 -3.22 10.04 22.41 0.23 -3.00 16 20 C 0.10 2.19 7.05 22.84 0.16 2.35 16 21 C -0.19 -3.44 6.25 -19.54 -0.12 -3.56 16 22 C -0.05 -0.92 9.78 22.48 0.22 -0.70 16 23 C -0.11 -1.12 7.12 30.74 0.22 -0.90 16 24 C 0.04 0.45 8.00 72.56 0.58 1.03 16 25 O -0.32 -6.23 11.10 -94.01 -1.04 -7.27 16 26 C 0.11 4.92 8.23 86.49 0.71 5.64 16 27 H 0.28 13.02 8.31 -92.71 -0.77 12.25 16 28 H 0.39 20.38 6.60 -74.06 -0.49 19.89 16 29 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.09 3.76 8.09 -2.39 -0.02 3.74 16 31 H 0.14 4.10 5.91 -2.91 -0.02 4.08 16 32 H 0.13 3.75 7.52 -2.91 -0.02 3.73 16 33 H 0.14 3.06 6.17 -2.91 -0.02 3.04 16 34 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 36 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 39 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.10 4.17 8.09 -2.39 -0.02 4.15 16 41 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -64.00 352.32 1.23 -62.78 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.58 Total: 36.99 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 4.56 Total: 3.83 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -2.81 Total: -75.76 kcal Atomic # 8 Polarization: -65.80 SS G_CDS: -3.13 Total: -68.93 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -64.00 1.23 -62.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186827997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.133 kcal (2) G-P(sol) polarization free energy of solvation -64.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds