Wall clock time and date at job start Tue Mar 31 2020 11:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86811 * 119.99805 * 2 1 4 4 H 1.48494 * 109.47172 * 270.00084 * 3 2 1 5 5 H 1.48499 * 109.46687 * 30.00540 * 3 2 1 6 6 H 1.48506 * 109.46790 * 150.00140 * 3 2 1 7 7 C 1.39937 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99641 * 197.89163 * 7 2 1 9 9 C 1.41435 * 120.00137 * 17.89697 * 7 2 1 10 10 C 1.40785 * 120.17469 * 204.47742 * 9 7 2 11 11 C 1.37713 * 120.03660 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.41493 * 0.29838 * 11 10 9 13 13 C 1.39883 * 120.35391 * 359.44027 * 12 11 10 14 14 C 1.47887 * 120.02333 * 180.25962 * 13 12 11 15 15 O 1.21554 * 119.99932 * 180.27372 * 14 13 12 16 16 N 1.34777 * 120.00283 * 0.27610 * 14 13 12 17 17 C 1.46492 * 120.00391 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.46926 * 35.00175 * 17 16 14 19 19 C 1.53000 * 109.47352 * 275.00028 * 17 16 14 20 20 C 1.53006 * 109.46950 * 64.99729 * 19 17 16 21 21 O 1.42902 * 109.46707 * 180.02562 * 20 19 17 22 22 C 1.50697 * 109.47515 * 154.99743 * 17 16 14 23 23 C 1.34513 * 125.79418 * 219.72230 * 22 17 16 24 24 C 1.41383 * 106.84185 * 179.89099 * 23 22 17 25 25 C 1.34512 * 106.84071 * 0.36280 * 24 23 22 26 26 O 1.34300 * 108.42074 * 359.77808 * 25 24 23 27 27 C 1.39036 * 119.95149 * 0.53647 * 13 12 11 28 28 H 0.96999 * 120.00150 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.97995 * 359.96647 * 10 9 7 30 30 H 1.07995 * 119.79107 * 180.02562 * 11 10 9 31 31 H 1.07998 * 119.82526 * 179.70701 * 12 11 10 32 32 H 0.97000 * 119.99521 * 359.97438 * 16 14 13 33 33 H 1.08996 * 109.47042 * 184.99387 * 19 17 16 34 34 H 1.08998 * 109.46902 * 305.00298 * 19 17 16 35 35 H 1.09003 * 109.46908 * 300.00385 * 20 19 17 36 36 H 1.09000 * 109.47169 * 60.00104 * 20 19 17 37 37 H 0.96699 * 113.99461 * 180.02562 * 21 20 19 38 38 H 1.08006 * 126.57767 * 0.02562 * 23 22 17 39 39 H 1.08006 * 126.57525 * 180.16318 * 24 23 22 40 40 H 1.07998 * 125.78902 * 179.74938 * 25 24 23 41 41 H 1.07996 * 120.20072 * 179.76647 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4396 2.6526 0.7002 6 1 3.5399 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0488 -1.2345 0.2868 9 6 1.3522 -2.4070 -0.3775 10 6 1.8260 -3.6499 0.0837 11 6 1.1849 -4.8117 -0.2846 12 6 0.0775 -4.7684 -1.1131 13 6 -0.4109 -3.5423 -1.5768 14 6 -1.5985 -3.5041 -2.4573 15 8 -2.0195 -2.4388 -2.8640 16 7 -2.2140 -4.6504 -2.8088 17 6 -3.3907 -4.6125 -3.6805 18 1 -3.2799 -3.8062 -4.4055 19 6 -4.6435 -4.3706 -2.8361 20 6 -4.5678 -2.9822 -2.1976 21 8 -5.7376 -2.7566 -1.4084 22 6 -3.5205 -5.9266 -4.4067 23 6 -3.8847 -6.0824 -5.6922 24 6 -3.8726 -7.4714 -5.9559 25 6 -3.5095 -8.0818 -4.8135 26 8 -3.2975 -7.1412 -3.8786 27 6 0.2245 -2.3600 -1.2139 28 1 -0.4850 0.8400 0.0004 29 1 2.6927 -3.6922 0.7266 30 1 1.5515 -5.7630 0.0718 31 1 -0.4151 -5.6857 -1.3998 32 1 -1.8778 -5.5005 -2.4845 33 1 -5.5270 -4.4306 -3.4715 34 1 -4.7061 -5.1272 -2.0540 35 1 -3.6841 -2.9222 -1.5622 36 1 -4.5051 -2.2256 -2.9796 37 1 -5.7578 -1.8934 -0.9730 38 1 -4.1359 -5.2970 -6.3897 39 1 -4.1124 -7.9506 -6.8937 40 1 -3.4065 -9.1475 -4.6720 41 1 -0.1469 -1.4115 -1.5726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187813801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:33 Heat of formation + Delta-G solvation = -56.199308 kcal Electronic energy + Delta-G solvation = -25763.254654 eV Core-core repulsion = 21995.376333 eV Total energy + Delta-G solvation = -3767.878321 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.73849 -39.60945 -37.38534 -36.56654 -35.18380 -33.79754 -33.14920 -31.69373 -29.81329 -29.53231 -29.44535 -25.65000 -25.12948 -22.72145 -21.98213 -21.48539 -21.02637 -20.27773 -19.59970 -18.15892 -17.45019 -17.14451 -16.23239 -16.09186 -16.00865 -15.20007 -14.91468 -14.75942 -14.30680 -13.98926 -13.75432 -13.45318 -13.25083 -12.96652 -12.86539 -12.66763 -12.58015 -12.54104 -12.36097 -11.72601 -11.50356 -11.21071 -11.13592 -10.87127 -10.75743 -10.52922 -10.06858 -10.06429 -9.73243 -9.67412 -9.25514 -9.15927 -8.87876 -8.60517 -7.68430 -7.56182 -6.84390 -4.45166 1.55643 2.12723 2.45717 2.77388 2.79675 3.05385 3.08413 3.12720 3.52165 3.76679 3.88843 4.21099 4.56895 4.65883 4.85590 4.94530 5.10550 5.18852 5.37724 5.56233 5.60486 5.63547 5.69116 5.79452 5.84004 5.91931 6.05368 6.16775 6.22715 6.24703 6.31589 6.64783 6.67799 6.93873 6.96718 7.01470 7.16993 7.33565 7.64690 7.70347 7.81339 7.87241 7.99920 8.13636 8.46165 8.75133 8.78225 8.81811 10.10352 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.003602 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.156902 B = 7771.161200 C = 8748.229981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.210 4.210 11 C -0.097 4.097 12 C -0.217 4.217 13 C -0.129 4.129 14 C 0.568 3.432 15 O -0.542 6.542 16 N -0.732 5.732 17 C 0.234 3.766 18 H 0.116 0.884 19 C -0.127 4.127 20 C 0.079 3.921 21 O -0.584 6.584 22 C -0.013 4.013 23 C -0.199 4.199 24 C -0.214 4.214 25 C -0.039 4.039 26 O -0.171 6.171 27 C -0.091 4.091 28 H 0.284 0.716 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.405 0.595 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.381 0.619 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.203 0.797 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.641 -9.640 -7.634 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.230 4.230 11 C -0.115 4.115 12 C -0.237 4.237 13 C -0.132 4.132 14 C 0.360 3.640 15 O -0.421 6.421 16 N -0.387 5.387 17 C 0.129 3.871 18 H 0.134 0.866 19 C -0.166 4.166 20 C 0.002 3.998 21 O -0.390 6.390 22 C -0.063 4.063 23 C -0.218 4.218 24 C -0.233 4.233 25 C -0.106 4.106 26 O -0.067 6.067 27 C -0.111 4.111 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.241 0.759 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.227 0.773 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.220 0.780 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.205 -9.347 -7.822 14.693 hybrid contribution 0.546 0.641 0.099 0.848 sum -7.658 -8.707 -7.723 13.932 Atomic orbital electron populations 1.69785 1.07569 1.29725 1.33700 1.25955 0.94777 1.01529 0.92245 0.86271 0.80406 0.80400 0.79455 1.19135 1.20216 1.18572 1.19602 0.98279 0.91059 1.39921 0.90053 1.17597 0.91207 0.92449 0.89174 1.21116 1.03407 0.92768 1.05674 1.20439 0.96048 0.96789 0.98270 1.20364 1.01387 0.94644 1.07291 1.19416 0.96505 0.95377 1.01947 1.18848 0.83033 0.82640 0.79485 1.90696 1.66258 1.29704 1.55419 1.46059 1.30223 1.10511 1.51881 1.19271 0.86229 0.89663 0.91939 0.86635 1.21966 0.96912 0.97897 0.99787 1.22299 0.87370 0.95654 0.94515 1.86331 1.43664 1.40978 1.67990 1.22431 1.05115 0.85122 0.93671 1.21589 1.07411 0.97261 0.95559 1.21821 1.07806 0.93851 0.99860 1.24066 1.04842 0.94262 0.87465 1.84007 1.68455 1.14699 1.39502 1.21630 0.96443 0.96373 0.96677 0.90478 0.88576 0.88858 0.89222 0.75870 0.90339 0.90700 0.92187 0.92873 0.77255 0.83200 0.83354 0.78029 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.13 10.96 55.55 0.61 -19.53 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.43 29.60 -169.99 -5.03 13.40 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.86 9.05 -37.73 -0.34 -12.20 16 8 H 0.08 2.00 7.91 -52.48 -0.42 1.59 16 9 C 0.10 2.55 5.57 -106.87 -0.60 1.95 16 10 C -0.21 -4.91 9.78 -38.81 -0.38 -5.29 16 11 C -0.10 -2.05 10.01 -39.72 -0.40 -2.45 16 12 C -0.22 -4.52 9.55 -38.92 -0.37 -4.89 16 13 C -0.13 -2.96 5.87 -105.04 -0.62 -3.58 16 14 C 0.57 11.73 6.34 -12.31 -0.08 11.66 16 15 O -0.54 -12.24 13.47 5.32 0.07 -12.17 16 16 N -0.73 -12.08 4.97 -55.87 -0.28 -12.36 16 17 C 0.23 3.35 2.71 -69.09 -0.19 3.16 16 18 H 0.12 1.69 7.57 -51.93 -0.39 1.30 16 19 C -0.13 -1.81 5.24 -26.73 -0.14 -1.95 16 20 C 0.08 1.28 5.65 37.16 0.21 1.49 16 21 O -0.58 -8.97 13.66 -35.23 -0.48 -9.45 16 22 C -0.01 -0.16 6.12 -35.63 -0.22 -0.38 16 23 C -0.20 -2.27 10.80 -39.70 -0.43 -2.70 16 24 C -0.21 -2.12 10.91 -39.70 -0.43 -2.55 16 25 C -0.04 -0.38 12.09 29.42 0.36 -0.02 16 26 O -0.17 -2.14 10.31 5.70 0.06 -2.09 16 27 C -0.09 -2.36 8.24 -38.44 -0.32 -2.67 16 28 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 29 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.09 1.58 6.38 -52.49 -0.33 1.25 16 32 H 0.41 6.24 6.33 -40.82 -0.26 5.98 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.15 5.65 -51.93 -0.29 0.85 16 36 H 0.05 0.87 7.84 -51.93 -0.41 0.46 16 37 H 0.38 4.43 9.12 45.56 0.42 4.85 16 38 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 40 H 0.20 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.13 3.73 5.74 -52.49 -0.30 3.43 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -29.87 348.76 -7.90 -37.77 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -4.08 Total: 17.85 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -4.03 Total: -18.68 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.33 Total: -31.88 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.35 Total: -23.71 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.87 -7.90 -37.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187813801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.429 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds