Wall clock time and date at job start Tue Mar 31 2020 11:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86811 * 119.99805 * 2 1 4 4 H 1.48494 * 109.47172 * 270.00084 * 3 2 1 5 5 H 1.48499 * 109.46687 * 30.00540 * 3 2 1 6 6 H 1.48506 * 109.46790 * 150.00140 * 3 2 1 7 7 C 1.39937 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99641 * 197.89163 * 7 2 1 9 9 C 1.41435 * 120.00137 * 17.89697 * 7 2 1 10 10 C 1.40785 * 120.17469 * 204.47742 * 9 7 2 11 11 C 1.37713 * 120.03660 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.41493 * 0.29838 * 11 10 9 13 13 C 1.39883 * 120.35391 * 359.44027 * 12 11 10 14 14 C 1.47887 * 120.02333 * 180.25962 * 13 12 11 15 15 O 1.21554 * 119.99932 * 180.27372 * 14 13 12 16 16 N 1.34777 * 120.00283 * 0.27610 * 14 13 12 17 17 C 1.46492 * 120.00391 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.46926 * 35.00175 * 17 16 14 19 19 C 1.53000 * 109.47352 * 275.00028 * 17 16 14 20 20 C 1.53006 * 109.46950 * 64.99729 * 19 17 16 21 21 O 1.42902 * 109.46707 * 180.02562 * 20 19 17 22 22 C 1.50697 * 109.47515 * 154.99743 * 17 16 14 23 23 C 1.34513 * 125.79418 * 219.72230 * 22 17 16 24 24 C 1.41383 * 106.84185 * 179.89099 * 23 22 17 25 25 C 1.34512 * 106.84071 * 0.36280 * 24 23 22 26 26 O 1.34300 * 108.42074 * 359.77808 * 25 24 23 27 27 C 1.39036 * 119.95149 * 0.53647 * 13 12 11 28 28 H 0.96999 * 120.00150 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.97995 * 359.96647 * 10 9 7 30 30 H 1.07995 * 119.79107 * 180.02562 * 11 10 9 31 31 H 1.07998 * 119.82526 * 179.70701 * 12 11 10 32 32 H 0.97000 * 119.99521 * 359.97438 * 16 14 13 33 33 H 1.08996 * 109.47042 * 184.99387 * 19 17 16 34 34 H 1.08998 * 109.46902 * 305.00298 * 19 17 16 35 35 H 1.09003 * 109.46908 * 300.00385 * 20 19 17 36 36 H 1.09000 * 109.47169 * 60.00104 * 20 19 17 37 37 H 0.96699 * 113.99461 * 180.02562 * 21 20 19 38 38 H 1.08006 * 126.57767 * 0.02562 * 23 22 17 39 39 H 1.08006 * 126.57525 * 180.16318 * 24 23 22 40 40 H 1.07998 * 125.78902 * 179.74938 * 25 24 23 41 41 H 1.07996 * 120.20072 * 179.76647 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4396 2.6526 0.7002 6 1 3.5399 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0488 -1.2345 0.2868 9 6 1.3522 -2.4070 -0.3775 10 6 1.8260 -3.6499 0.0837 11 6 1.1849 -4.8117 -0.2846 12 6 0.0775 -4.7684 -1.1131 13 6 -0.4109 -3.5423 -1.5768 14 6 -1.5985 -3.5041 -2.4573 15 8 -2.0195 -2.4388 -2.8640 16 7 -2.2140 -4.6504 -2.8088 17 6 -3.3907 -4.6125 -3.6805 18 1 -3.2799 -3.8062 -4.4055 19 6 -4.6435 -4.3706 -2.8361 20 6 -4.5678 -2.9822 -2.1976 21 8 -5.7376 -2.7566 -1.4084 22 6 -3.5205 -5.9266 -4.4067 23 6 -3.8847 -6.0824 -5.6922 24 6 -3.8726 -7.4714 -5.9559 25 6 -3.5095 -8.0818 -4.8135 26 8 -3.2975 -7.1412 -3.8786 27 6 0.2245 -2.3600 -1.2139 28 1 -0.4850 0.8400 0.0004 29 1 2.6927 -3.6922 0.7266 30 1 1.5515 -5.7630 0.0718 31 1 -0.4151 -5.6857 -1.3998 32 1 -1.8778 -5.5005 -2.4845 33 1 -5.5270 -4.4306 -3.4715 34 1 -4.7061 -5.1272 -2.0540 35 1 -3.6841 -2.9222 -1.5622 36 1 -4.5051 -2.2256 -2.9796 37 1 -5.7578 -1.8934 -0.9730 38 1 -4.1359 -5.2970 -6.3897 39 1 -4.1124 -7.9506 -6.8937 40 1 -3.4065 -9.1475 -4.6720 41 1 -0.1469 -1.4115 -1.5726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187813801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:31 Heat of formation + Delta-G solvation = -76.300923 kcal Electronic energy + Delta-G solvation = -25764.126326 eV Core-core repulsion = 21995.376333 eV Total energy + Delta-G solvation = -3768.749992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.58576 -41.16323 -39.05689 -37.95647 -36.54012 -35.61204 -34.02730 -33.12768 -31.51526 -31.21832 -30.49481 -27.30306 -26.52369 -24.30272 -22.91490 -22.80105 -22.59688 -21.32139 -21.16934 -19.65488 -18.76979 -18.41900 -17.64467 -17.46324 -16.98319 -16.85348 -16.45277 -16.21907 -15.69627 -15.54066 -15.08251 -15.03532 -14.63921 -14.32634 -14.25145 -13.94112 -13.75704 -13.54306 -13.48045 -13.34903 -12.96493 -12.81996 -12.74752 -12.50654 -12.22250 -12.09410 -11.85788 -11.51209 -11.08314 -11.00791 -10.87104 -10.80709 -10.30643 -9.51264 -9.45322 -9.39712 -8.67050 -6.38181 0.35194 0.69770 1.00154 1.37216 1.47944 1.50928 1.65864 1.91162 2.08675 2.16990 2.19566 2.77533 3.12971 3.61118 3.69621 3.89683 3.95185 4.03943 4.13697 4.21102 4.34617 4.37589 4.44041 4.57429 4.61163 4.83016 4.85817 4.89945 4.98277 5.00928 5.08452 5.14163 5.17577 5.28359 5.33337 5.51143 5.59319 5.84458 5.91579 6.04438 6.15729 6.27256 6.44774 6.62702 6.70725 6.87828 6.93372 7.21407 8.29719 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.003602 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.156902 B = 7771.161200 C = 8748.229981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.032 3.968 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.497 4.497 8 H 0.083 0.917 9 C 0.068 3.932 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.202 4.202 13 C -0.139 4.139 14 C 0.568 3.432 15 O -0.569 6.569 16 N -0.714 5.714 17 C 0.239 3.761 18 H 0.109 0.891 19 C -0.118 4.118 20 C 0.085 3.915 21 O -0.589 6.589 22 C -0.041 4.041 23 C -0.196 4.196 24 C -0.225 4.225 25 C -0.031 4.031 26 O -0.187 6.187 27 C -0.126 4.126 28 H 0.287 0.713 29 H 0.108 0.892 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.412 0.588 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.047 0.953 37 H 0.395 0.605 38 H 0.162 0.838 39 H 0.174 0.826 40 H 0.241 0.759 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 -12.255 -8.476 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.066 3.934 10 C -0.237 4.237 11 C -0.114 4.114 12 C -0.221 4.221 13 C -0.142 4.142 14 C 0.359 3.641 15 O -0.449 6.449 16 N -0.367 5.367 17 C 0.134 3.866 18 H 0.127 0.873 19 C -0.157 4.157 20 C 0.007 3.993 21 O -0.397 6.397 22 C -0.091 4.091 23 C -0.215 4.215 24 C -0.243 4.243 25 C -0.098 4.098 26 O -0.083 6.083 27 C -0.147 4.147 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.250 0.750 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.244 0.756 38 H 0.179 0.821 39 H 0.191 0.809 40 H 0.257 0.743 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.565 -12.001 -8.661 17.100 hybrid contribution 0.564 1.213 0.307 1.373 sum -8.002 -10.788 -8.354 15.818 Atomic orbital electron populations 1.69874 1.09109 1.30614 1.35068 1.26806 0.95432 1.04767 0.91312 0.85207 0.79257 0.75926 0.79386 1.19075 1.19359 1.17603 1.19863 0.98600 0.92244 1.41925 0.89927 1.17941 0.91838 0.93791 0.89855 1.21403 1.03877 0.92821 1.05629 1.20895 0.95408 0.97733 0.97317 1.20826 1.00733 0.95141 1.05433 1.19743 0.97050 0.95424 1.01980 1.18587 0.82799 0.83369 0.79373 1.90677 1.66877 1.30995 1.56398 1.45866 1.30283 1.09354 1.51242 1.19243 0.84966 0.91014 0.91332 0.87316 1.21908 0.97667 0.96254 0.99835 1.22153 0.86387 0.96952 0.93787 1.86300 1.43037 1.42339 1.68038 1.22071 1.08111 0.84766 0.94141 1.21920 1.05861 0.98677 0.95059 1.22182 1.07914 0.93084 1.01159 1.24918 1.02750 0.95365 0.86773 1.83985 1.68931 1.14853 1.40545 1.21440 0.98073 0.96384 0.98786 0.90233 0.87419 0.84630 0.85313 0.75027 0.88500 0.90942 0.95514 0.93443 0.75623 0.82084 0.80858 0.74299 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.64 10.96 21.82 0.24 -44.40 16 2 C 0.03 1.65 5.14 85.25 0.44 2.09 16 3 Si 0.98 39.03 29.60 68.60 2.03 41.06 16 4 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.50 -26.79 9.05 23.47 0.21 -26.58 16 8 H 0.08 4.22 7.91 -2.91 -0.02 4.20 16 9 C 0.07 3.66 5.57 -21.32 -0.12 3.54 16 10 C -0.22 -10.16 9.78 22.77 0.22 -9.94 16 11 C -0.10 -3.83 10.01 22.18 0.22 -3.60 16 12 C -0.20 -8.03 9.55 22.70 0.22 -7.82 16 13 C -0.14 -6.47 5.87 -20.13 -0.12 -6.59 16 14 C 0.57 23.95 6.34 86.80 0.55 24.50 16 15 O -0.57 -26.91 13.47 -3.88 -0.05 -26.96 16 16 N -0.71 -23.10 4.97 -448.95 -2.23 -25.33 16 17 C 0.24 6.66 2.71 44.25 0.12 6.78 16 18 H 0.11 3.19 7.57 -2.39 -0.02 3.17 16 19 C -0.12 -3.29 5.24 30.60 0.16 -3.13 16 20 C 0.08 2.80 5.65 71.98 0.41 3.21 16 21 O -0.59 -18.03 13.66 -148.98 -2.04 -20.07 16 22 C -0.04 -0.97 6.12 24.83 0.15 -0.82 16 23 C -0.20 -4.00 10.80 22.19 0.24 -3.76 16 24 C -0.22 -3.67 10.91 22.19 0.24 -3.43 16 25 C -0.03 -0.49 12.09 66.97 0.81 0.32 16 26 O -0.19 -4.18 10.31 -2.50 -0.03 -4.20 16 27 C -0.13 -6.87 8.24 23.01 0.19 -6.68 16 28 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 29 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 31 H 0.13 4.07 6.38 -2.91 -0.02 4.05 16 32 H 0.41 11.92 6.33 -92.71 -0.59 11.33 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 35 H 0.03 1.06 5.65 -2.39 -0.01 1.05 16 36 H 0.05 1.60 7.84 -2.39 -0.02 1.58 16 37 H 0.39 9.28 9.12 -74.06 -0.68 8.60 16 38 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 39 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.24 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.10 6.21 5.74 -2.91 -0.02 6.19 16 Total: -1.00 -68.36 348.76 1.69 -66.67 By element: Atomic # 1 Polarization: 45.31 SS G_CDS: -0.18 Total: 45.13 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 3.95 Total: -31.90 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -1.99 Total: -69.73 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -2.11 Total: -51.23 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -68.36 1.69 -66.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187813801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.633 kcal (2) G-P(sol) polarization free energy of solvation -68.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds