Wall clock time and date at job start Tue Mar 31 2020 11:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86803 * 120.00134 * 2 1 4 4 H 1.48501 * 109.47338 * 274.66533 * 3 2 1 5 5 H 1.48499 * 109.46896 * 34.66417 * 3 2 1 6 6 H 1.48493 * 109.47387 * 154.66215 * 3 2 1 7 7 C 1.40225 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00071 * 162.20124 * 7 2 1 9 9 C 1.41114 * 120.00166 * 342.20437 * 7 2 1 10 10 C 1.40886 * 120.10640 * 155.06111 * 9 7 2 11 11 C 1.36314 * 119.89169 * 180.02562 * 10 9 7 12 12 C 1.40005 * 120.10647 * 0.25930 * 11 10 9 13 13 C 1.47640 * 119.89524 * 179.74267 * 12 11 10 14 14 O 1.21589 * 119.99916 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00178 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99924 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.47448 * 35.00225 * 16 15 13 18 18 C 1.53004 * 109.47171 * 274.99867 * 16 15 13 19 19 C 1.53003 * 109.47022 * 65.00406 * 18 16 15 20 20 O 1.42902 * 109.46994 * 179.97438 * 19 18 16 21 21 C 1.50704 * 109.47058 * 155.00006 * 16 15 13 22 22 C 1.34509 * 125.78863 * 219.71136 * 21 16 15 23 23 C 1.41386 * 106.83955 * 179.88859 * 22 21 16 24 24 C 1.34517 * 106.84041 * 0.37610 * 23 22 21 25 25 O 1.34304 * 125.78716 * 40.02623 * 21 16 15 26 26 C 1.40014 * 120.21204 * 359.48715 * 12 11 10 27 27 C 1.36315 * 120.10211 * 0.51014 * 26 12 11 28 28 H 0.97005 * 120.00335 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.05300 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.94486 * 179.97438 * 11 10 9 31 31 H 0.96999 * 120.00176 * 0.02562 * 15 13 12 32 32 H 1.08999 * 109.47169 * 185.00120 * 18 16 15 33 33 H 1.08999 * 109.47060 * 305.00240 * 18 16 15 34 34 H 1.08999 * 109.46915 * 299.99870 * 19 18 16 35 35 H 1.09002 * 109.46961 * 59.99649 * 19 18 16 36 36 H 0.96696 * 113.99643 * 179.97438 * 20 19 18 37 37 H 1.07994 * 126.58385 * 0.03529 * 22 21 16 38 38 H 1.07995 * 126.58180 * 180.16695 * 23 22 21 39 39 H 1.07995 * 125.79009 * 179.74582 * 24 23 22 40 40 H 1.07998 * 119.94675 * 180.25536 * 26 12 11 41 41 H 1.08009 * 120.05637 * 179.72691 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3894 2.1034 -1.3954 5 1 1.4907 2.6222 0.7963 6 1 3.5838 1.4138 0.5991 7 6 2.0076 -1.2144 -0.0005 8 1 3.0488 -1.2366 -0.2865 9 6 1.3527 -2.4074 0.3724 10 6 1.8229 -3.6489 -0.0993 11 6 1.1866 -4.7986 0.2633 12 6 0.0643 -4.7467 1.0987 13 6 -0.6246 -5.9944 1.4839 14 8 -0.2174 -7.0647 1.0753 15 7 -1.7049 -5.9469 2.2884 16 6 -2.3882 -7.1850 2.6711 17 1 -1.6556 -7.9840 2.7850 18 6 -3.3959 -7.5679 1.5853 19 6 -2.6499 -7.9006 0.2916 20 8 -3.5911 -8.2589 -0.7223 21 6 -3.1114 -6.9768 3.9767 22 6 -3.1936 -7.8676 4.9812 23 6 -3.9574 -7.2612 6.0049 24 6 -4.3033 -6.0393 5.5613 25 8 -3.7881 -5.8725 4.3322 26 6 -0.4036 -3.5157 1.5743 27 6 0.2261 -2.3607 1.2172 28 1 -0.4851 0.8401 0.0004 29 1 2.6861 -3.6896 -0.7472 30 1 1.5461 -5.7507 -0.0981 31 1 -2.0300 -5.0930 2.6140 32 1 -3.9665 -8.4382 1.9097 33 1 -4.0747 -6.7335 1.4090 34 1 -2.0794 -7.0304 -0.0329 35 1 -1.9711 -8.7350 0.4679 36 1 -3.1876 -8.4825 -1.5722 37 1 -2.7577 -8.8554 5.0028 38 1 -4.2165 -7.6969 6.9585 39 1 -4.8952 -5.3154 6.1016 40 1 -1.2672 -3.4810 2.2218 41 1 -0.1381 -1.4112 1.5810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274587554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:57 Heat of formation + Delta-G solvation = -60.182629 kcal Electronic energy + Delta-G solvation = -25472.009101 eV Core-core repulsion = 21703.958051 eV Total energy + Delta-G solvation = -3768.051051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.70205 -39.49690 -37.46414 -36.60738 -35.13876 -33.91783 -33.11966 -31.66424 -29.87031 -29.53966 -29.45203 -26.22936 -24.99670 -22.29018 -21.94609 -21.44841 -21.02720 -20.27120 -19.62650 -17.99546 -17.55549 -17.17829 -16.54782 -16.14097 -16.05050 -15.46472 -14.89291 -14.53650 -14.06323 -13.97807 -13.75214 -13.44039 -13.26731 -12.93575 -12.84954 -12.70161 -12.57581 -12.33859 -12.14189 -12.00138 -11.50485 -11.40521 -11.28532 -11.05705 -10.84920 -10.66750 -10.10051 -10.03469 -9.71083 -9.60019 -9.38151 -9.10622 -8.80530 -8.56783 -7.76129 -7.58861 -7.07369 -4.64295 1.59416 2.16678 2.48751 2.82855 2.88089 2.92620 2.98671 3.00293 3.63558 3.70726 3.78649 4.21696 4.49951 4.66982 4.88488 4.97444 5.12094 5.20690 5.41216 5.53426 5.59831 5.67265 5.75313 5.83232 5.94555 5.96704 6.02815 6.16727 6.22453 6.26970 6.35134 6.71890 6.75154 6.78818 6.98480 7.06288 7.09081 7.39376 7.59956 7.73979 7.76787 7.82202 8.02893 8.12453 8.36068 8.59078 8.71142 8.93641 9.84555 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.014793 B = 0.003287 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.374421 B = 8515.072973 C = 9591.754769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.441 4.441 8 H 0.085 0.915 9 C 0.130 3.870 10 C -0.239 4.239 11 C -0.020 4.020 12 C -0.287 4.287 13 C 0.576 3.424 14 O -0.572 6.572 15 N -0.737 5.737 16 C 0.236 3.764 17 H 0.114 0.886 18 C -0.127 4.127 19 C 0.080 3.920 20 O -0.584 6.584 21 C -0.012 4.012 22 C -0.200 4.200 23 C -0.215 4.215 24 C -0.038 4.038 25 O -0.170 6.170 26 C -0.061 4.061 27 C -0.178 4.178 28 H 0.287 0.713 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.403 0.597 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.379 0.621 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.203 0.797 40 H 0.088 0.912 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.276 -7.733 7.382 12.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.039 4.039 12 C -0.292 4.292 13 C 0.372 3.628 14 O -0.455 6.455 15 N -0.391 5.391 16 C 0.130 3.870 17 H 0.132 0.868 18 C -0.166 4.166 19 C 0.003 3.997 20 O -0.389 6.389 21 C -0.063 4.063 22 C -0.220 4.220 23 C -0.234 4.234 24 C -0.106 4.106 25 O -0.066 6.066 26 C -0.080 4.080 27 C -0.197 4.197 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.239 0.761 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.225 0.775 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.220 0.780 40 H 0.106 0.894 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.652 -7.951 7.387 13.279 hybrid contribution 0.378 0.991 0.027 1.062 sum -7.274 -6.959 7.415 12.503 Atomic orbital electron populations 1.69741 1.07938 1.30133 1.31443 1.26109 0.94813 1.01933 0.91875 0.86209 0.80855 0.79898 0.79420 1.19201 1.19704 1.18057 1.19869 0.98415 0.91196 1.37368 0.89660 1.17791 0.90307 0.92193 0.87078 1.20716 1.04706 0.92665 1.07809 1.20338 0.92808 0.97126 0.93628 1.18825 1.04589 0.90888 1.14867 1.18573 0.78155 0.89828 0.76281 1.90630 1.66836 1.31497 1.56545 1.46018 1.31556 1.08563 1.52960 1.19223 0.92129 0.89835 0.85769 0.86803 1.21964 0.98179 1.02556 0.93889 1.22300 0.89986 1.00081 0.87353 1.86357 1.37457 1.91149 1.23978 1.22471 0.99637 0.86323 0.97883 1.21574 1.05140 1.01534 0.93728 1.21815 1.04259 0.95870 1.01466 1.24075 1.02510 0.99467 0.84546 1.84017 1.53593 1.37924 1.31060 1.20484 0.97308 0.92641 0.97610 1.20969 0.99909 0.96905 1.01921 0.90168 0.88365 0.88071 0.76080 0.90466 0.90727 0.92177 0.92956 0.77458 0.83259 0.83384 0.78041 0.89352 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.26 10.97 55.56 0.61 -17.65 16 2 C 0.07 1.71 5.13 -17.31 -0.09 1.62 16 3 Si 0.91 17.04 29.60 -169.99 -5.03 12.01 16 4 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 7 C -0.44 -10.82 9.04 -37.75 -0.34 -11.16 16 8 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.25 5.57 -106.80 -0.60 2.66 16 10 C -0.24 -5.67 9.73 -39.27 -0.38 -6.06 16 11 C -0.02 -0.45 9.52 -39.61 -0.38 -0.83 16 12 C -0.29 -6.37 5.89 -104.73 -0.62 -6.99 16 13 C 0.58 11.53 6.33 -12.42 -0.08 11.45 16 14 O -0.57 -12.16 13.45 5.29 0.07 -12.09 16 15 N -0.74 -12.29 4.97 -55.94 -0.28 -12.57 16 16 C 0.24 3.39 2.71 -69.08 -0.19 3.20 16 17 H 0.11 1.66 7.57 -51.93 -0.39 1.27 16 18 C -0.13 -1.81 5.24 -26.73 -0.14 -1.95 16 19 C 0.08 1.24 5.65 37.16 0.21 1.45 16 20 O -0.58 -8.55 13.66 -35.23 -0.48 -9.03 16 21 C -0.01 -0.16 6.12 -35.62 -0.22 -0.38 16 22 C -0.20 -2.34 10.80 -39.70 -0.43 -2.76 16 23 C -0.21 -2.21 10.91 -39.70 -0.43 -2.64 16 24 C -0.04 -0.39 12.09 29.42 0.36 -0.04 16 25 O -0.17 -2.24 10.31 5.70 0.06 -2.18 16 26 C -0.06 -1.35 9.47 -39.61 -0.38 -1.72 16 27 C -0.18 -4.31 8.63 -39.27 -0.34 -4.65 16 28 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 29 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.10 2.20 7.63 -52.49 -0.40 1.80 16 31 H 0.40 6.48 6.32 -40.82 -0.26 6.22 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.09 5.64 -51.93 -0.29 0.80 16 35 H 0.05 0.81 7.84 -51.93 -0.41 0.40 16 36 H 0.38 3.98 9.12 45.56 0.42 4.40 16 37 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.09 1.69 6.37 -52.49 -0.33 1.36 16 41 H 0.12 2.95 6.17 -52.48 -0.32 2.62 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -28.76 348.52 -7.92 -36.67 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -4.08 Total: 18.39 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -4.04 Total: -18.79 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.33 Total: -30.22 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.35 Total: -23.31 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.76 -7.92 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274587554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.508 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds