Wall clock time and date at job start Tue Mar 31 2020 11:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86803 * 120.00134 * 2 1 4 4 H 1.48501 * 109.47338 * 274.66533 * 3 2 1 5 5 H 1.48499 * 109.46896 * 34.66417 * 3 2 1 6 6 H 1.48493 * 109.47387 * 154.66215 * 3 2 1 7 7 C 1.40225 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00071 * 162.20124 * 7 2 1 9 9 C 1.41114 * 120.00166 * 342.20437 * 7 2 1 10 10 C 1.40886 * 120.10640 * 155.06111 * 9 7 2 11 11 C 1.36314 * 119.89169 * 180.02562 * 10 9 7 12 12 C 1.40005 * 120.10647 * 0.25930 * 11 10 9 13 13 C 1.47640 * 119.89524 * 179.74267 * 12 11 10 14 14 O 1.21589 * 119.99916 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00178 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99924 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.47448 * 35.00225 * 16 15 13 18 18 C 1.53004 * 109.47171 * 274.99867 * 16 15 13 19 19 C 1.53003 * 109.47022 * 65.00406 * 18 16 15 20 20 O 1.42902 * 109.46994 * 179.97438 * 19 18 16 21 21 C 1.50704 * 109.47058 * 155.00006 * 16 15 13 22 22 C 1.34509 * 125.78863 * 219.71136 * 21 16 15 23 23 C 1.41386 * 106.83955 * 179.88859 * 22 21 16 24 24 C 1.34517 * 106.84041 * 0.37610 * 23 22 21 25 25 O 1.34304 * 125.78716 * 40.02623 * 21 16 15 26 26 C 1.40014 * 120.21204 * 359.48715 * 12 11 10 27 27 C 1.36315 * 120.10211 * 0.51014 * 26 12 11 28 28 H 0.97005 * 120.00335 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.05300 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.94486 * 179.97438 * 11 10 9 31 31 H 0.96999 * 120.00176 * 0.02562 * 15 13 12 32 32 H 1.08999 * 109.47169 * 185.00120 * 18 16 15 33 33 H 1.08999 * 109.47060 * 305.00240 * 18 16 15 34 34 H 1.08999 * 109.46915 * 299.99870 * 19 18 16 35 35 H 1.09002 * 109.46961 * 59.99649 * 19 18 16 36 36 H 0.96696 * 113.99643 * 179.97438 * 20 19 18 37 37 H 1.07994 * 126.58385 * 0.03529 * 22 21 16 38 38 H 1.07995 * 126.58180 * 180.16695 * 23 22 21 39 39 H 1.07995 * 125.79009 * 179.74582 * 24 23 22 40 40 H 1.07998 * 119.94675 * 180.25536 * 26 12 11 41 41 H 1.08009 * 120.05637 * 179.72691 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3894 2.1034 -1.3954 5 1 1.4907 2.6222 0.7963 6 1 3.5838 1.4138 0.5991 7 6 2.0076 -1.2144 -0.0005 8 1 3.0488 -1.2366 -0.2865 9 6 1.3527 -2.4074 0.3724 10 6 1.8229 -3.6489 -0.0993 11 6 1.1866 -4.7986 0.2633 12 6 0.0643 -4.7467 1.0987 13 6 -0.6246 -5.9944 1.4839 14 8 -0.2174 -7.0647 1.0753 15 7 -1.7049 -5.9469 2.2884 16 6 -2.3882 -7.1850 2.6711 17 1 -1.6556 -7.9840 2.7850 18 6 -3.3959 -7.5679 1.5853 19 6 -2.6499 -7.9006 0.2916 20 8 -3.5911 -8.2589 -0.7223 21 6 -3.1114 -6.9768 3.9767 22 6 -3.1936 -7.8676 4.9812 23 6 -3.9574 -7.2612 6.0049 24 6 -4.3033 -6.0393 5.5613 25 8 -3.7881 -5.8725 4.3322 26 6 -0.4036 -3.5157 1.5743 27 6 0.2261 -2.3607 1.2172 28 1 -0.4851 0.8401 0.0004 29 1 2.6861 -3.6896 -0.7472 30 1 1.5461 -5.7507 -0.0981 31 1 -2.0300 -5.0930 2.6140 32 1 -3.9665 -8.4382 1.9097 33 1 -4.0747 -6.7335 1.4090 34 1 -2.0794 -7.0304 -0.0329 35 1 -1.9711 -8.7350 0.4679 36 1 -3.1876 -8.4825 -1.5722 37 1 -2.7577 -8.8554 5.0028 38 1 -4.2165 -7.6969 6.9585 39 1 -4.8952 -5.3154 6.1016 40 1 -1.2672 -3.4810 2.2218 41 1 -0.1381 -1.4112 1.5810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274587554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:53 Heat of formation + Delta-G solvation = -78.571614 kcal Electronic energy + Delta-G solvation = -25472.806508 eV Core-core repulsion = 21703.958051 eV Total energy + Delta-G solvation = -3768.848457 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -43.58314 -41.03012 -39.13643 -37.92331 -36.45929 -35.67736 -34.02381 -33.07643 -31.53568 -31.28856 -30.48002 -27.86715 -26.26372 -23.86353 -22.91677 -22.79161 -22.59762 -21.36949 -21.12689 -19.38133 -19.13527 -18.41252 -17.87505 -17.44717 -17.06845 -16.98125 -16.18988 -15.86251 -15.73024 -15.47281 -15.07040 -14.98835 -14.60478 -14.35698 -13.92156 -13.88421 -13.75505 -13.69232 -13.52748 -13.34200 -13.17759 -12.85256 -12.71877 -12.62926 -12.35829 -12.05330 -11.78069 -11.38246 -11.12144 -10.96295 -10.86635 -10.72104 -10.21103 -9.58472 -9.47274 -9.41254 -8.80268 -6.49159 0.42449 0.70474 1.14818 1.38007 1.41860 1.54619 1.66300 1.94068 2.11115 2.17542 2.30357 2.77328 3.16783 3.63515 3.69745 3.92865 4.04775 4.14116 4.14863 4.25596 4.29046 4.39556 4.44837 4.46504 4.65442 4.85333 4.89667 4.92174 4.99027 5.02220 5.03143 5.14493 5.15009 5.28830 5.40045 5.57569 5.60494 5.81013 5.92775 5.98954 6.16567 6.21999 6.53202 6.60008 6.76420 6.77158 6.87934 7.36036 8.14982 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.014793 B = 0.003287 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.374421 B = 8515.072973 C = 9591.754769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.474 4.474 8 H 0.086 0.914 9 C 0.103 3.897 10 C -0.253 4.253 11 C -0.028 4.028 12 C -0.294 4.294 13 C 0.579 3.421 14 O -0.586 6.586 15 N -0.726 5.726 16 C 0.241 3.759 17 H 0.112 0.888 18 C -0.120 4.120 19 C 0.086 3.914 20 O -0.591 6.591 21 C -0.042 4.042 22 C -0.196 4.196 23 C -0.223 4.223 24 C -0.036 4.036 25 O -0.190 6.190 26 C -0.056 4.056 27 C -0.198 4.198 28 H 0.297 0.703 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.407 0.593 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.052 0.948 36 H 0.395 0.605 37 H 0.164 0.836 38 H 0.175 0.825 39 H 0.238 0.762 40 H 0.115 0.885 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.337 -7.783 8.848 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.180 1.180 7 C -0.501 4.501 8 H 0.104 0.896 9 C 0.099 3.901 10 C -0.273 4.273 11 C -0.047 4.047 12 C -0.299 4.299 13 C 0.374 3.626 14 O -0.469 6.469 15 N -0.378 5.378 16 C 0.136 3.864 17 H 0.130 0.870 18 C -0.159 4.159 19 C 0.009 3.991 20 O -0.400 6.400 21 C -0.092 4.092 22 C -0.216 4.216 23 C -0.242 4.242 24 C -0.103 4.103 25 O -0.087 6.087 26 C -0.075 4.075 27 C -0.218 4.218 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.243 0.757 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.245 0.755 37 H 0.182 0.818 38 H 0.192 0.808 39 H 0.254 0.746 40 H 0.133 0.867 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.736 -8.027 8.854 14.804 hybrid contribution 0.597 0.879 -0.387 1.131 sum -8.139 -7.149 8.467 13.749 Atomic orbital electron populations 1.69766 1.09287 1.31624 1.31515 1.26933 0.95518 1.04870 0.90790 0.85111 0.79289 0.75326 0.79627 1.18566 1.18648 1.18016 1.20134 0.98780 0.92230 1.38937 0.89564 1.18129 0.91109 0.93007 0.87811 1.20872 1.05304 0.92754 1.08335 1.20502 0.93171 0.97163 0.93860 1.19149 1.04430 0.92059 1.14232 1.18242 0.78874 0.88758 0.76760 1.90617 1.67502 1.31625 1.57184 1.45895 1.30435 1.09867 1.51594 1.19229 0.92021 0.88395 0.86748 0.87003 1.21914 0.97880 1.02893 0.93207 1.22153 0.90081 0.98799 0.88102 1.86325 1.37661 1.91041 1.24936 1.22231 1.01583 0.87409 0.97958 1.21921 1.04343 1.01866 0.93428 1.22185 1.03916 0.95868 1.02216 1.24895 1.01580 1.00342 0.83466 1.83997 1.54068 1.38122 1.32466 1.20702 0.97607 0.91903 0.97254 1.20986 1.00629 0.97282 1.02859 0.89202 0.87668 0.87359 0.75702 0.88720 0.91550 0.95073 0.92955 0.75538 0.81798 0.80796 0.74614 0.86675 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.29 10.97 21.87 0.24 -38.05 16 2 C 0.04 1.76 5.13 85.35 0.44 2.20 16 3 Si 0.99 34.67 29.60 68.60 2.03 36.70 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 5 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 6 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 7 C -0.47 -23.84 9.04 23.46 0.21 -23.62 16 8 H 0.09 4.15 7.91 -2.91 -0.02 4.12 16 9 C 0.10 5.31 5.57 -21.28 -0.12 5.19 16 10 C -0.25 -12.36 9.73 22.47 0.22 -12.14 16 11 C -0.03 -1.29 9.52 22.25 0.21 -1.08 16 12 C -0.29 -13.16 5.89 -19.94 -0.12 -13.28 16 13 C 0.58 23.15 6.33 86.73 0.55 23.69 16 14 O -0.59 -24.86 13.45 -4.00 -0.05 -24.91 16 15 N -0.73 -23.78 4.97 -449.15 -2.23 -26.02 16 16 C 0.24 6.68 2.71 44.25 0.12 6.80 16 17 H 0.11 3.16 7.57 -2.39 -0.02 3.14 16 18 C -0.12 -3.30 5.24 30.60 0.16 -3.14 16 19 C 0.09 2.64 5.65 71.98 0.41 3.04 16 20 O -0.59 -16.78 13.66 -148.98 -2.04 -18.81 16 21 C -0.04 -1.04 6.12 24.83 0.15 -0.88 16 22 C -0.20 -4.12 10.80 22.19 0.24 -3.88 16 23 C -0.22 -3.90 10.91 22.19 0.24 -3.65 16 24 C -0.04 -0.63 12.09 66.97 0.81 0.18 16 25 O -0.19 -4.66 10.31 -2.51 -0.03 -4.68 16 26 C -0.06 -2.47 9.47 22.25 0.21 -2.26 16 27 C -0.20 -9.85 8.63 22.47 0.19 -9.66 16 28 H 0.30 12.65 8.29 -92.70 -0.77 11.88 16 29 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 30 H 0.11 4.80 7.63 -2.91 -0.02 4.77 16 31 H 0.41 12.76 6.32 -92.71 -0.59 12.17 16 32 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.03 1.13 5.64 -2.39 -0.01 1.12 16 35 H 0.05 1.58 7.84 -2.39 -0.02 1.57 16 36 H 0.40 7.96 9.12 -74.06 -0.68 7.29 16 37 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 38 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 39 H 0.24 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.12 4.35 6.37 -2.91 -0.02 4.33 16 41 H 0.11 5.62 6.17 -2.91 -0.02 5.60 16 Total: -1.00 -62.45 348.52 1.68 -60.77 By element: Atomic # 1 Polarization: 47.67 SS G_CDS: -0.17 Total: 47.50 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 3.93 Total: -32.50 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -1.99 Total: -64.07 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -2.11 Total: -48.40 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 2.03 Total: 36.70 kcal Total: -62.45 1.68 -60.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274587554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.797 kcal (2) G-P(sol) polarization free energy of solvation -62.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds