Wall clock time and date at job start Tue Mar 31 2020 11:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99957 * 2 1 4 4 H 1.48496 * 109.47114 * 270.00514 * 3 2 1 5 5 H 1.48504 * 109.47166 * 30.00312 * 3 2 1 6 6 H 1.48499 * 109.47038 * 150.00280 * 3 2 1 7 7 C 1.38948 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00424 * 166.37957 * 7 2 1 9 9 N 1.37104 * 119.99491 * 346.37263 * 7 2 1 10 10 C 1.34775 * 119.99601 * 149.27066 * 9 7 2 11 11 O 1.21291 * 120.00141 * 4.65055 * 10 9 7 12 12 C 1.50700 * 119.99648 * 184.64875 * 10 9 7 13 13 H 1.08991 * 110.63263 * 321.11279 * 12 10 9 14 14 C 1.54803 * 110.82333 * 197.90188 * 12 10 9 15 15 C 1.54264 * 102.22252 * 266.71729 * 14 12 10 16 16 H 1.08999 * 110.02334 * 104.17276 * 15 14 12 17 17 C 1.50704 * 110.02637 * 225.53905 * 15 14 12 18 18 C 1.38239 * 119.99926 * 264.32438 * 17 15 14 19 19 C 1.38239 * 119.99806 * 179.97438 * 18 17 15 20 20 C 1.38240 * 119.99489 * 0.02562 * 19 18 17 21 21 C 1.38232 * 120.00538 * 0.25332 * 20 19 18 22 22 C 1.38234 * 119.99801 * 359.49186 * 21 20 19 23 23 O 1.45367 * 106.67088 * 344.85810 * 15 14 12 24 24 C 1.34007 * 111.49439 * 357.70410 * 23 15 14 25 25 O 1.20822 * 125.69572 * 199.62176 * 24 23 15 26 26 C 1.46494 * 120.00178 * 329.26381 * 9 7 2 27 27 C 1.53000 * 117.50106 * 311.37927 * 26 9 7 28 28 C 1.52999 * 117.50400 * 242.75173 * 26 9 7 29 29 H 0.97006 * 120.00048 * 5.05256 * 1 2 3 30 30 H 1.09008 * 110.84497 * 148.54643 * 14 12 10 31 31 H 1.09002 * 110.88736 * 24.90678 * 14 12 10 32 32 H 1.07996 * 120.00268 * 0.02562 * 18 17 15 33 33 H 1.07991 * 119.99892 * 180.02562 * 19 18 17 34 34 H 1.08001 * 119.99085 * 179.97438 * 20 19 18 35 35 H 1.07995 * 119.99673 * 179.71940 * 21 20 19 36 36 H 1.07997 * 120.00186 * 180.25341 * 22 21 20 37 37 H 1.09000 * 115.54868 * 97.08164 * 26 9 7 38 38 H 1.09002 * 117.49898 * 359.97438 * 27 26 9 39 39 H 1.09003 * 117.50020 * 145.01979 * 27 26 9 40 40 H 1.08996 * 117.50105 * 214.98136 * 28 26 9 41 41 H 1.09003 * 117.49396 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0661 -1.2164 -0.2208 9 7 1.3523 -2.3740 0.2787 10 6 1.7646 -3.5281 -0.2822 11 8 2.7660 -3.5462 -0.9662 12 6 0.9813 -4.7961 -0.0593 13 1 0.6155 -4.8464 0.9662 14 6 1.8396 -6.0396 -0.3963 15 6 1.4681 -6.3031 -1.8701 16 1 2.2755 -5.9722 -2.5234 17 6 1.2031 -7.7716 -2.0810 18 6 2.2090 -8.5949 -2.5514 19 6 1.9660 -9.9420 -2.7443 20 6 0.7170 -10.4656 -2.4672 21 6 -0.2905 -9.6412 -2.0022 22 6 -0.0460 -8.2951 -1.8043 23 8 0.2633 -5.5359 -2.1401 24 6 -0.1678 -4.8967 -1.0440 25 8 -1.2850 -4.4711 -0.8697 26 6 0.2027 -2.3705 1.1868 27 6 0.3609 -1.6442 2.5240 28 6 0.3242 -3.1733 2.4836 29 1 -0.4850 0.8368 -0.0740 30 1 1.5599 -6.8857 0.2315 31 1 2.9020 -5.8167 -0.2979 32 1 3.1849 -8.1859 -2.7675 33 1 2.7519 -10.5853 -3.1114 34 1 0.5271 -11.5180 -2.6183 35 1 -1.2675 -10.0495 -1.7901 36 1 -0.8319 -7.6518 -1.4372 37 1 -0.7753 -2.3347 0.7069 38 1 1.3205 -1.1693 2.7284 39 1 -0.5131 -1.1303 2.9241 40 1 -0.5738 -3.6652 2.8570 41 1 1.2595 -3.7044 2.6609 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291566974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:03 Heat of formation + Delta-G solvation = -48.160510 kcal Electronic energy + Delta-G solvation = -26644.093798 eV Core-core repulsion = 22876.564065 eV Total energy + Delta-G solvation = -3767.529733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.16036 -39.17008 -38.43759 -37.10655 -36.13705 -33.33680 -32.81231 -31.55988 -31.06037 -31.00360 -27.40372 -25.21310 -23.04099 -22.72036 -22.17204 -21.50876 -21.45043 -20.65707 -19.09369 -17.44736 -17.00166 -16.84698 -16.52399 -15.79379 -15.53680 -15.26327 -14.94717 -14.60130 -14.17115 -14.08147 -13.80470 -13.49389 -13.23712 -13.16108 -13.06232 -12.76803 -12.25632 -12.08984 -12.01402 -11.51927 -11.28720 -11.20166 -11.12344 -11.04974 -10.80238 -10.62071 -10.39697 -10.31241 -9.88265 -9.79517 -9.47512 -9.04396 -8.93983 -8.85987 -8.55487 -7.70231 -6.36267 -3.98506 1.15398 1.28027 2.36970 3.12891 3.22734 3.26610 3.33320 3.57312 3.76809 4.02693 4.42090 4.46657 4.54608 4.59634 4.66200 4.80206 4.86327 4.99795 5.02427 5.15423 5.23437 5.37550 5.42669 5.55304 5.68921 5.73017 5.81404 5.83811 5.92385 5.96524 6.09716 6.14683 6.18375 6.31958 6.37773 6.47287 6.63502 6.84568 6.84866 7.08258 7.17457 7.53316 7.82495 8.07347 8.37225 9.06215 9.29650 9.82713 10.69798 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024984 B = 0.003684 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.466699 B = 7597.587273 C = 7974.282810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.047 3.953 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.323 4.323 8 H 0.098 0.902 9 N -0.403 5.403 10 C 0.467 3.533 11 O -0.574 6.574 12 C -0.175 4.175 13 H 0.129 0.871 14 C -0.125 4.125 15 C 0.132 3.868 16 H 0.120 0.880 17 C -0.095 4.095 18 C -0.104 4.104 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.100 4.100 23 O -0.337 6.337 24 C 0.503 3.497 25 O -0.442 6.442 26 C 0.121 3.879 27 C -0.146 4.146 28 C -0.225 4.225 29 H 0.270 0.730 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 -16.304 0.995 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.160 4.160 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.450 4.450 8 H 0.116 0.884 9 N -0.120 5.120 10 C 0.253 3.747 11 O -0.459 6.459 12 C -0.198 4.198 13 H 0.147 0.853 14 C -0.163 4.163 15 C 0.076 3.924 16 H 0.137 0.863 17 C -0.095 4.095 18 C -0.122 4.122 19 C -0.139 4.139 20 C -0.138 4.138 21 C -0.138 4.138 22 C -0.118 4.118 23 O -0.253 6.253 24 C 0.342 3.658 25 O -0.324 6.324 26 C 0.015 3.985 27 C -0.184 4.184 28 C -0.263 4.263 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.578 -15.912 0.609 15.935 hybrid contribution 0.217 0.965 0.135 0.998 sum 0.795 -14.947 0.744 14.987 Atomic orbital electron populations 1.69882 1.06007 1.27960 1.45656 1.25366 0.95351 0.99636 0.95609 0.86017 0.79467 0.81142 0.78652 1.20208 1.20717 1.19315 1.19487 0.94293 0.82272 1.48928 0.88446 1.42998 1.26352 1.06055 1.36548 1.19002 0.87711 0.83911 0.84046 1.90524 1.27335 1.85097 1.42916 1.22953 0.96540 0.97492 1.02864 0.85348 1.22902 1.03396 0.96110 0.93902 1.22240 0.85098 0.86481 0.98537 0.86252 1.19986 0.94883 0.94367 1.00267 1.20946 0.98907 0.93646 0.98683 1.21105 0.97205 0.95094 1.00459 1.21180 0.93484 0.99724 0.99455 1.21142 0.99304 0.93542 0.99763 1.21016 0.96492 0.95351 0.98905 1.86795 1.42770 1.59565 1.36205 1.22682 0.87729 0.74480 0.80925 1.90704 1.20933 1.45117 1.75687 1.21365 0.91701 1.01397 0.83999 1.22774 1.02649 0.92099 1.00878 1.23535 1.02152 0.95794 1.04827 0.91958 0.89419 0.87038 0.85420 0.85831 0.86108 0.85924 0.86026 0.86608 0.88875 0.89464 0.89083 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.91 11.39 55.50 0.63 -22.28 16 2 C 0.05 1.23 4.78 -17.47 -0.08 1.14 16 3 Si 0.92 20.40 29.58 -169.99 -5.03 15.38 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.32 -8.78 8.73 -14.93 -0.13 -8.91 16 8 H 0.10 2.75 7.54 -52.49 -0.40 2.35 16 9 N -0.40 -10.14 2.89 -107.73 -0.31 -10.45 16 10 C 0.47 11.07 6.76 -10.99 -0.07 10.99 16 11 O -0.57 -14.90 15.56 5.55 0.09 -14.81 16 12 C -0.18 -3.27 2.63 -91.50 -0.24 -3.51 16 13 H 0.13 2.19 5.40 -51.93 -0.28 1.91 16 14 C -0.13 -1.85 5.91 -25.12 -0.15 -2.00 16 15 C 0.13 2.00 3.83 -27.22 -0.10 1.89 16 16 H 0.12 1.79 8.07 -51.93 -0.42 1.37 16 17 C -0.09 -1.22 4.87 -104.62 -0.51 -1.73 16 18 C -0.10 -1.12 9.70 -39.58 -0.38 -1.50 16 19 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 20 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 21 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 22 C -0.10 -1.25 9.36 -39.58 -0.37 -1.63 16 23 O -0.34 -6.37 9.76 -38.29 -0.37 -6.75 16 24 C 0.50 10.21 7.84 36.48 0.29 10.50 16 25 O -0.44 -10.00 17.93 -18.37 -0.33 -10.33 16 26 C 0.12 2.71 3.47 -67.93 -0.24 2.47 16 27 C -0.15 -2.94 9.16 -26.73 -0.24 -3.19 16 28 C -0.22 -4.00 8.28 -26.73 -0.22 -4.22 16 29 H 0.27 6.85 8.32 -40.82 -0.34 6.51 16 30 H 0.09 1.05 7.79 -51.92 -0.40 0.64 16 31 H 0.11 1.67 7.35 -51.93 -0.38 1.28 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.63 7.49 -52.49 -0.39 1.23 16 37 H 0.12 2.88 7.92 -51.93 -0.41 2.46 16 38 H 0.09 1.96 8.01 -51.93 -0.42 1.55 16 39 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.09 1.47 7.94 -51.93 -0.41 1.06 16 LS Contribution 348.21 15.07 5.25 5.25 Total: -1.00 -31.65 348.21 -8.92 -40.57 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.19 Total: 7.80 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.65 Total: -4.37 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.32 Total: -32.73 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.62 Total: -31.89 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.65 -8.92 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291566974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.590 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds