Wall clock time and date at job start Tue Mar 31 2020 11:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99957 * 2 1 4 4 H 1.48496 * 109.47114 * 270.00514 * 3 2 1 5 5 H 1.48504 * 109.47166 * 30.00312 * 3 2 1 6 6 H 1.48499 * 109.47038 * 150.00280 * 3 2 1 7 7 C 1.38948 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00424 * 166.37957 * 7 2 1 9 9 N 1.37104 * 119.99491 * 346.37263 * 7 2 1 10 10 C 1.34775 * 119.99601 * 149.27066 * 9 7 2 11 11 O 1.21291 * 120.00141 * 4.65055 * 10 9 7 12 12 C 1.50700 * 119.99648 * 184.64875 * 10 9 7 13 13 H 1.08991 * 110.63263 * 321.11279 * 12 10 9 14 14 C 1.54803 * 110.82333 * 197.90188 * 12 10 9 15 15 C 1.54264 * 102.22252 * 266.71729 * 14 12 10 16 16 H 1.08999 * 110.02334 * 104.17276 * 15 14 12 17 17 C 1.50704 * 110.02637 * 225.53905 * 15 14 12 18 18 C 1.38239 * 119.99926 * 264.32438 * 17 15 14 19 19 C 1.38239 * 119.99806 * 179.97438 * 18 17 15 20 20 C 1.38240 * 119.99489 * 0.02562 * 19 18 17 21 21 C 1.38232 * 120.00538 * 0.25332 * 20 19 18 22 22 C 1.38234 * 119.99801 * 359.49186 * 21 20 19 23 23 O 1.45367 * 106.67088 * 344.85810 * 15 14 12 24 24 C 1.34007 * 111.49439 * 357.70410 * 23 15 14 25 25 O 1.20822 * 125.69572 * 199.62176 * 24 23 15 26 26 C 1.46494 * 120.00178 * 329.26381 * 9 7 2 27 27 C 1.53000 * 117.50106 * 311.37927 * 26 9 7 28 28 C 1.52999 * 117.50400 * 242.75173 * 26 9 7 29 29 H 0.97006 * 120.00048 * 5.05256 * 1 2 3 30 30 H 1.09008 * 110.84497 * 148.54643 * 14 12 10 31 31 H 1.09002 * 110.88736 * 24.90678 * 14 12 10 32 32 H 1.07996 * 120.00268 * 0.02562 * 18 17 15 33 33 H 1.07991 * 119.99892 * 180.02562 * 19 18 17 34 34 H 1.08001 * 119.99085 * 179.97438 * 20 19 18 35 35 H 1.07995 * 119.99673 * 179.71940 * 21 20 19 36 36 H 1.07997 * 120.00186 * 180.25341 * 22 21 20 37 37 H 1.09000 * 115.54868 * 97.08164 * 26 9 7 38 38 H 1.09002 * 117.49898 * 359.97438 * 27 26 9 39 39 H 1.09003 * 117.50020 * 145.01979 * 27 26 9 40 40 H 1.08996 * 117.50105 * 214.98136 * 28 26 9 41 41 H 1.09003 * 117.49396 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0661 -1.2164 -0.2208 9 7 1.3523 -2.3740 0.2787 10 6 1.7646 -3.5281 -0.2822 11 8 2.7660 -3.5462 -0.9662 12 6 0.9813 -4.7961 -0.0593 13 1 0.6155 -4.8464 0.9662 14 6 1.8396 -6.0396 -0.3963 15 6 1.4681 -6.3031 -1.8701 16 1 2.2755 -5.9722 -2.5234 17 6 1.2031 -7.7716 -2.0810 18 6 2.2090 -8.5949 -2.5514 19 6 1.9660 -9.9420 -2.7443 20 6 0.7170 -10.4656 -2.4672 21 6 -0.2905 -9.6412 -2.0022 22 6 -0.0460 -8.2951 -1.8043 23 8 0.2633 -5.5359 -2.1401 24 6 -0.1678 -4.8967 -1.0440 25 8 -1.2850 -4.4711 -0.8697 26 6 0.2027 -2.3705 1.1868 27 6 0.3609 -1.6442 2.5240 28 6 0.3242 -3.1733 2.4836 29 1 -0.4850 0.8368 -0.0740 30 1 1.5599 -6.8857 0.2315 31 1 2.9020 -5.8167 -0.2979 32 1 3.1849 -8.1859 -2.7675 33 1 2.7519 -10.5853 -3.1114 34 1 0.5271 -11.5180 -2.6183 35 1 -1.2675 -10.0495 -1.7901 36 1 -0.8319 -7.6518 -1.4372 37 1 -0.7753 -2.3347 0.7069 38 1 1.3205 -1.1693 2.7284 39 1 -0.5131 -1.1303 2.9241 40 1 -0.5738 -3.6652 2.8570 41 1 1.2595 -3.7044 2.6609 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291566974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:01 Heat of formation + Delta-G solvation = -65.061868 kcal Electronic energy + Delta-G solvation = -26644.826695 eV Core-core repulsion = 22876.564065 eV Total energy + Delta-G solvation = -3768.262630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.62556 -40.44385 -39.90859 -38.64101 -37.89555 -35.12791 -34.19703 -33.19047 -32.53659 -31.79584 -28.69552 -27.04388 -24.40207 -23.66765 -23.50230 -23.13415 -22.94642 -21.92013 -20.76671 -18.97795 -18.54511 -18.36572 -17.97413 -17.23879 -17.12574 -16.68144 -16.19651 -15.97493 -15.87559 -15.55067 -15.00247 -14.85908 -14.60818 -14.54172 -14.24669 -14.01369 -13.92969 -13.45910 -13.26118 -13.03129 -12.91532 -12.77805 -12.54242 -12.33556 -12.27624 -12.13830 -11.95843 -11.62878 -11.55279 -11.40277 -11.17557 -10.79136 -10.40440 -9.84090 -9.71771 -9.65457 -8.34707 -6.05596 0.30481 0.48294 0.75903 1.34617 1.39559 1.51399 1.75199 2.06620 2.22471 2.77760 2.80152 2.92753 3.01057 3.16769 3.24580 3.39784 3.71616 3.87541 3.94070 4.13222 4.15143 4.18095 4.23906 4.32473 4.35683 4.51791 4.59946 4.67078 4.74197 4.76018 4.88645 5.01573 5.04294 5.14712 5.31154 5.39964 5.45366 5.52992 5.54788 5.60914 5.70994 6.06665 6.07503 6.23040 6.42156 7.08197 7.36524 7.89941 8.69770 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024984 B = 0.003684 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.466699 B = 7597.587273 C = 7974.282810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.014 3.986 3 Si 0.982 3.018 4 H -0.279 1.279 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.353 4.353 8 H 0.076 0.924 9 N -0.416 5.416 10 C 0.458 3.542 11 O -0.606 6.606 12 C -0.165 4.165 13 H 0.147 0.853 14 C -0.113 4.113 15 C 0.128 3.872 16 H 0.115 0.885 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.119 4.119 23 O -0.352 6.352 24 C 0.502 3.498 25 O -0.474 6.474 26 C 0.090 3.910 27 C -0.147 4.147 28 C -0.181 4.181 29 H 0.273 0.727 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.141 0.859 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -18.681 1.839 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.481 4.481 8 H 0.094 0.906 9 N -0.133 5.133 10 C 0.246 3.754 11 O -0.493 6.493 12 C -0.187 4.187 13 H 0.165 0.835 14 C -0.150 4.150 15 C 0.074 3.926 16 H 0.133 0.867 17 C -0.110 4.110 18 C -0.127 4.127 19 C -0.135 4.135 20 C -0.133 4.133 21 C -0.142 4.142 22 C -0.138 4.138 23 O -0.269 6.269 24 C 0.342 3.658 25 O -0.359 6.359 26 C -0.014 4.014 27 C -0.185 4.185 28 C -0.219 4.219 29 H 0.083 0.917 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.171 0.829 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.120 -18.312 1.463 18.405 hybrid contribution 0.059 1.607 -0.229 1.625 sum 1.179 -16.705 1.234 16.792 Atomic orbital electron populations 1.69990 1.07060 1.28754 1.45807 1.26069 0.96081 1.02174 0.94709 0.85112 0.78561 0.77369 0.78432 1.20472 1.19405 1.18810 1.19493 0.93856 0.84015 1.50691 0.90613 1.43199 1.26737 1.05927 1.37453 1.19751 0.87457 0.85133 0.83088 1.90485 1.28804 1.86037 1.43945 1.22847 0.95968 0.96460 1.03467 0.83509 1.22972 1.02604 0.95213 0.94215 1.22451 0.83591 0.87852 0.98741 0.86729 1.19811 0.95901 0.92790 1.02546 1.21170 0.98971 0.94298 0.98212 1.21488 0.98106 0.94670 0.99266 1.21582 0.92908 1.01076 0.97716 1.21393 1.00675 0.92695 0.99415 1.21006 0.96080 0.96388 1.00283 1.86767 1.44313 1.59727 1.36055 1.22920 0.87651 0.73888 0.81341 1.90670 1.22326 1.46380 1.76524 1.21179 0.89571 1.05971 0.84723 1.22757 1.02352 0.94108 0.99242 1.23621 1.04205 0.94447 0.99634 0.91746 0.85892 0.87047 0.84108 0.82889 0.83080 0.84168 0.87795 0.89642 0.90220 0.88462 0.85781 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.01 11.39 21.66 0.25 -47.76 16 2 C 0.01 0.76 4.78 84.93 0.41 1.17 16 3 Si 0.98 42.45 29.58 68.60 2.03 44.47 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.35 -19.91 8.73 84.04 0.73 -19.17 16 8 H 0.08 4.48 7.54 -2.91 -0.02 4.46 16 9 N -0.42 -21.57 2.89 -613.14 -1.77 -23.34 16 10 C 0.46 22.24 6.76 87.66 0.59 22.83 16 11 O -0.61 -32.47 15.56 -3.06 -0.05 -32.51 16 12 C -0.16 -6.14 2.63 -11.36 -0.03 -6.17 16 13 H 0.15 4.82 5.40 -2.39 -0.01 4.81 16 14 C -0.11 -3.21 5.91 31.64 0.19 -3.02 16 15 C 0.13 3.88 3.83 30.28 0.12 4.00 16 16 H 0.11 3.50 8.07 -2.39 -0.02 3.48 16 17 C -0.11 -2.71 4.87 -19.86 -0.10 -2.81 16 18 C -0.11 -2.10 9.70 22.27 0.22 -1.88 16 19 C -0.12 -1.78 10.05 22.27 0.22 -1.56 16 20 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 21 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 22 C -0.12 -2.91 9.36 22.27 0.21 -2.70 16 23 O -0.35 -13.72 9.76 -49.66 -0.48 -14.20 16 24 C 0.50 20.89 7.84 71.54 0.56 21.45 16 25 O -0.47 -22.22 17.93 21.61 0.39 -21.84 16 26 C 0.09 4.11 3.47 44.99 0.16 4.26 16 27 C -0.15 -5.85 9.16 30.60 0.28 -5.57 16 28 C -0.18 -6.11 8.28 30.60 0.25 -5.86 16 29 H 0.27 14.04 8.32 -92.70 -0.77 13.27 16 30 H 0.12 2.64 7.79 -2.38 -0.02 2.62 16 31 H 0.11 3.23 7.35 -2.39 -0.02 3.21 16 32 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.15 1.41 8.06 -2.92 -0.02 1.39 16 34 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 36 H 0.10 2.83 7.49 -2.91 -0.02 2.81 16 37 H 0.09 4.40 7.92 -2.39 -0.02 4.38 16 38 H 0.08 3.37 8.01 -2.39 -0.02 3.35 16 39 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 40 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.10 3.12 7.94 -2.39 -0.02 3.11 16 Total: -1.00 -72.17 348.21 5.66 -66.51 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 1.05 Total: 27.28 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 4.25 Total: 1.39 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -1.53 Total: -71.10 kcal Atomic # 8 Polarization: -68.41 SS G_CDS: -0.15 Total: -68.56 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -72.17 5.66 -66.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291566974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.450 kcal (2) G-P(sol) polarization free energy of solvation -72.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds