Wall clock time and date at job start Tue Mar 31 2020 11:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 119.99950 * 2 1 4 4 H 1.48499 * 109.47423 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47297 * 120.00255 * 3 2 1 6 6 H 1.48505 * 109.47283 * 240.00176 * 3 2 1 7 7 C 1.38952 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99940 * 198.66611 * 7 2 1 9 9 N 1.37100 * 120.00182 * 18.65903 * 7 2 1 10 10 C 1.34781 * 119.99494 * 41.59759 * 9 7 2 11 11 O 1.21289 * 120.00198 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99556 * 180.02562 * 10 9 7 13 13 H 1.09001 * 110.32761 * 60.78623 * 12 10 9 14 14 C 1.54487 * 110.36496 * 183.14305 * 12 10 9 15 15 C 1.54577 * 102.14608 * 103.49307 * 14 12 10 16 16 H 1.09001 * 110.43834 * 268.10912 * 15 14 12 17 17 C 1.50698 * 110.54758 * 145.64113 * 15 14 12 18 18 C 1.38238 * 119.99932 * 283.19195 * 17 15 14 19 19 C 1.38233 * 120.00178 * 179.81359 * 18 17 15 20 20 C 1.38239 * 119.99554 * 0.41042 * 19 18 17 21 21 C 1.38235 * 120.00064 * 359.81624 * 20 19 18 22 22 C 1.38227 * 119.99980 * 359.97438 * 21 20 19 23 23 O 1.45836 * 104.43959 * 26.84543 * 15 14 12 24 24 C 1.34062 * 109.90935 * 329.39663 * 23 15 14 25 25 O 1.20828 * 125.09166 * 200.79561 * 24 23 15 26 26 C 1.46495 * 119.99957 * 221.59503 * 9 7 2 27 27 C 1.52995 * 117.50269 * 12.75903 * 26 9 7 28 28 C 1.52997 * 117.50253 * 304.09584 * 26 9 7 29 29 H 0.96997 * 120.00190 * 354.52094 * 1 2 3 30 30 H 1.09000 * 110.86700 * 221.65036 * 14 12 10 31 31 H 1.08996 * 110.87145 * 345.33034 * 14 12 10 32 32 H 1.08007 * 119.99737 * 359.97438 * 18 17 15 33 33 H 1.07995 * 120.00282 * 180.20781 * 19 18 17 34 34 H 1.08008 * 119.99603 * 179.79353 * 20 19 18 35 35 H 1.07998 * 119.99465 * 179.97438 * 21 20 19 36 36 H 1.08009 * 119.99970 * 179.97438 * 22 21 20 37 37 H 1.09008 * 115.54881 * 158.42669 * 26 9 7 38 38 H 1.09004 * 117.49570 * 0.02562 * 27 26 9 39 39 H 1.09001 * 117.50151 * 145.01373 * 27 26 9 40 40 H 1.08999 * 117.50065 * 214.98185 * 28 26 9 41 41 H 1.09004 * 117.49511 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2832 2.7465 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1019 1.6964 -1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0463 -1.2281 0.2988 9 7 1.3775 -2.3593 -0.3809 10 6 0.5458 -2.3552 -1.4415 11 8 0.3556 -1.3288 -2.0590 12 6 -0.1487 -3.6258 -1.8593 13 1 -0.7847 -3.9922 -1.0534 14 6 -0.9813 -3.3877 -3.1386 15 6 -0.0980 -4.0388 -4.2273 16 1 0.5744 -3.3003 -4.6639 17 6 -0.9538 -4.6671 -5.2969 18 6 -1.5779 -5.8777 -5.0603 19 6 -2.3660 -6.4521 -6.0399 20 6 -2.5232 -5.8200 -7.2593 21 6 -1.8954 -4.6117 -7.4975 22 6 -1.1108 -4.0353 -6.5163 23 8 0.6610 -5.0612 -3.5164 24 6 0.8671 -4.6777 -2.2484 25 8 1.7336 -5.1081 -1.5247 26 6 1.6069 -3.5989 0.3653 27 6 2.3112 -3.4886 1.7191 28 6 3.0529 -4.0758 0.5157 29 1 -0.4850 0.8362 0.0802 30 1 -1.9473 -3.8881 -3.0719 31 1 -1.1072 -2.3215 -3.3272 32 1 -1.4517 -6.3734 -4.1090 33 1 -2.8562 -7.3962 -5.8539 34 1 -3.1364 -6.2705 -8.0259 35 1 -2.0180 -4.1182 -8.4503 36 1 -0.6199 -3.0914 -6.7026 37 1 0.8341 -4.3606 0.2607 38 1 2.6035 -2.4935 2.0547 39 1 2.0020 -4.1777 2.5050 40 1 3.2314 -5.1510 0.5103 41 1 3.8335 -3.4673 0.0589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291566983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:18 Heat of formation + Delta-G solvation = -34.830388 kcal Electronic energy + Delta-G solvation = -26769.834389 eV Core-core repulsion = 23002.882694 eV Total energy + Delta-G solvation = -3766.951695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.09173 -39.21194 -38.22688 -37.15272 -35.92262 -33.20427 -32.57835 -31.58266 -31.01148 -30.70651 -27.25937 -25.14431 -22.99004 -22.71068 -21.90523 -21.38513 -21.17962 -20.76993 -19.10486 -17.63365 -17.34169 -16.39566 -16.02849 -15.93668 -15.60568 -14.93226 -14.77371 -14.53486 -14.24736 -13.85184 -13.59170 -13.50159 -13.37215 -13.06445 -12.99335 -12.60701 -12.15175 -11.94030 -11.70861 -11.34324 -11.20531 -11.11697 -10.92638 -10.90768 -10.68370 -10.63236 -10.41034 -10.26921 -10.09630 -9.65742 -9.30021 -9.03422 -8.86670 -8.74127 -8.14472 -7.03395 -6.16425 -3.90002 1.14644 1.29040 2.40399 3.28101 3.34674 3.35678 3.38262 3.68628 3.88573 4.23228 4.43040 4.56593 4.67472 4.71826 4.79213 4.87441 4.97517 5.01423 5.15873 5.21780 5.29085 5.40419 5.47680 5.61459 5.77564 5.81172 5.86791 5.92330 5.98044 6.02856 6.17535 6.31416 6.34684 6.37906 6.46783 6.47747 6.63271 6.84882 6.91657 7.01552 7.09468 7.57835 7.84768 8.20012 8.97668 9.04765 9.59019 10.16756 10.91858 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.004240 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.465874 B = 6601.655202 C = 7733.818210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.347 4.347 8 H 0.081 0.919 9 N -0.412 5.412 10 C 0.484 3.516 11 O -0.523 6.523 12 C -0.172 4.172 13 H 0.124 0.876 14 C -0.128 4.128 15 C 0.126 3.874 16 H 0.105 0.895 17 C -0.082 4.082 18 C -0.095 4.095 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.103 4.103 23 O -0.344 6.344 24 C 0.488 3.512 25 O -0.431 6.431 26 C 0.089 3.911 27 C -0.190 4.190 28 C -0.178 4.178 29 H 0.265 0.735 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 -10.431 -9.508 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.139 4.139 3 Si 0.742 3.258 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.474 4.474 8 H 0.099 0.901 9 N -0.131 5.131 10 C 0.269 3.731 11 O -0.401 6.401 12 C -0.196 4.196 13 H 0.141 0.859 14 C -0.166 4.166 15 C 0.071 3.929 16 H 0.123 0.877 17 C -0.083 4.083 18 C -0.113 4.113 19 C -0.141 4.141 20 C -0.137 4.137 21 C -0.139 4.139 22 C -0.121 4.121 23 O -0.261 6.261 24 C 0.327 3.673 25 O -0.312 6.312 26 C -0.017 4.017 27 C -0.228 4.228 28 C -0.216 4.216 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.114 -10.155 -9.646 14.911 hybrid contribution 0.204 0.754 0.235 0.816 sum -4.910 -9.401 -9.411 14.180 Atomic orbital electron populations 1.69825 1.06550 1.27665 1.42046 1.25203 0.94851 0.99342 0.94537 0.86229 0.79277 0.81707 0.78577 1.21128 1.20310 1.19942 1.18911 0.95016 0.83782 1.49651 0.90128 1.42707 1.41056 1.06490 1.22810 1.18776 0.84571 0.87274 0.82472 1.90518 1.63169 1.32169 1.54228 1.22695 0.98000 0.97970 1.00923 0.85872 1.22931 0.97483 1.05314 0.90860 1.22482 0.91908 0.87116 0.91420 0.87736 1.19579 0.98314 0.96068 0.94290 1.21017 0.95785 0.94795 0.99680 1.21147 0.99075 1.00121 0.93728 1.21188 0.99671 0.95662 0.97183 1.21098 0.97713 0.95972 0.99132 1.20995 0.98825 1.00074 0.92168 1.87010 1.69610 1.44361 1.25155 1.22880 0.83273 0.80386 0.80765 1.90787 1.31981 1.56006 1.52467 1.21656 0.94793 0.89771 0.95493 1.23242 1.05600 1.02525 0.91392 1.23030 0.96908 0.99565 1.02133 0.92453 0.89621 0.86082 0.85665 0.85940 0.86116 0.85815 0.85454 0.87882 0.87801 0.90121 0.89691 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.83 11.51 55.50 0.64 -23.19 16 2 C 0.07 1.98 4.37 -17.47 -0.08 1.90 16 3 Si 0.92 21.65 29.60 -169.99 -5.03 16.62 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.35 -9.47 7.75 -14.93 -0.12 -9.59 16 8 H 0.08 2.15 7.46 -52.49 -0.39 1.76 16 9 N -0.41 -10.42 2.88 -107.73 -0.31 -10.73 16 10 C 0.48 11.91 6.40 -10.98 -0.07 11.84 16 11 O -0.52 -14.47 12.84 5.55 0.07 -14.40 16 12 C -0.17 -3.26 2.50 -91.83 -0.23 -3.49 16 13 H 0.12 2.14 7.65 -51.93 -0.40 1.74 16 14 C -0.13 -2.04 6.18 -25.12 -0.16 -2.19 16 15 C 0.13 1.87 3.73 -27.06 -0.10 1.77 16 16 H 0.10 1.57 8.04 -51.93 -0.42 1.15 16 17 C -0.08 -1.05 4.99 -104.63 -0.52 -1.57 16 18 C -0.09 -1.12 9.26 -39.58 -0.37 -1.49 16 19 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 20 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 21 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 22 C -0.10 -1.15 9.68 -39.59 -0.38 -1.54 16 23 O -0.34 -5.82 10.09 -38.47 -0.39 -6.21 16 24 C 0.49 9.15 7.66 36.31 0.28 9.43 16 25 O -0.43 -8.80 12.73 -18.41 -0.23 -9.04 16 26 C 0.09 1.92 4.17 -67.94 -0.28 1.63 16 27 C -0.19 -3.72 9.83 -26.70 -0.26 -3.99 16 28 C -0.18 -3.51 8.63 -26.70 -0.23 -3.74 16 29 H 0.27 7.32 8.32 -40.82 -0.34 6.99 16 30 H 0.09 1.15 7.84 -51.93 -0.41 0.74 16 31 H 0.12 2.17 6.65 -51.93 -0.35 1.82 16 32 H 0.13 1.44 7.76 -52.48 -0.41 1.04 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.13 1.27 8.05 -52.48 -0.42 0.85 16 37 H 0.10 2.08 5.76 -51.92 -0.30 1.79 16 38 H 0.10 2.21 6.98 -51.93 -0.36 1.84 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.55 7.98 -51.93 -0.41 1.13 16 41 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -32.37 339.17 -8.97 -41.33 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.11 Total: 6.22 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -3.71 Total: -5.70 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.33 Total: -33.92 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.55 Total: -29.65 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.37 -8.97 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291566983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.500 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds