Wall clock time and date at job start Tue Mar 31 2020 10:47:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86792 * 120.00118 * 2 1
4 4 H 1.48503 * 109.46905 * 239.99985 * 3 2 1
5 5 H 1.48507 * 109.47396 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47466 * 120.00327 * 3 2 1
7 7 C 1.37875 * 119.99371 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99891 * 179.97438 * 7 2 1
9 9 C 1.50701 * 120.00356 * 0.02562 * 7 2 1
10 10 O 1.42896 * 113.41523 * 46.79572 * 9 7 2
11 11 C 1.53494 * 114.20568 * 179.97438 * 9 7 2
12 12 N 1.47069 * 88.05051 * 139.68070 * 11 9 7
13 13 C 1.34780 * 136.05759 * 152.80924 * 12 11 9
14 14 O 1.21273 * 119.99846 * 355.00024 * 13 12 11
15 15 C 1.50700 * 119.99538 * 175.00064 * 13 12 11
16 16 H 1.09000 * 109.11182 * 338.97929 * 15 13 12
17 17 C 1.52620 * 109.12083 * 98.13475 * 15 13 12
18 18 C 1.53444 * 109.37554 * 175.02157 * 17 15 13
19 19 C 1.51471 * 107.36210 * 295.96679 * 18 17 15
20 20 O 1.21251 * 121.17986 * 222.52620 * 19 18 17
21 21 C 1.47590 * 117.63893 * 42.50726 * 19 18 17
22 22 C 1.39792 * 119.72582 * 168.75430 * 21 19 18
23 23 C 1.37899 * 119.77468 * 179.86124 * 22 21 19
24 24 C 1.38421 * 119.94784 * 359.92075 * 23 22 21
25 25 C 1.38250 * 120.49588 * 0.12908 * 24 23 22
26 26 C 1.38310 * 120.35972 * 359.97438 * 25 24 23
27 27 C 1.47064 * 87.88097 * 332.85024 * 12 11 9
28 28 H 0.97005 * 119.99488 * 359.97438 * 1 2 3
29 29 H 0.96701 * 114.00202 * 313.20858 * 10 9 7
30 30 H 1.09007 * 113.47329 * 24.87373 * 11 9 7
31 31 H 1.08997 * 113.47032 * 254.49160 * 11 9 7
32 32 H 1.09005 * 109.47954 * 294.98813 * 17 15 13
33 33 H 1.08996 * 109.48971 * 55.04492 * 17 15 13
34 34 H 1.09010 * 109.87369 * 55.42882 * 18 17 15
35 35 H 1.09000 * 109.88042 * 176.49932 * 18 17 15
36 36 H 1.08001 * 120.11092 * 359.81277 * 22 21 19
37 37 H 1.07994 * 120.02410 * 179.91869 * 23 22 21
38 38 H 1.08007 * 119.75402 * 180.11124 * 24 23 22
39 39 H 1.07992 * 119.82319 * 179.97438 * 25 24 23
40 40 H 1.09004 * 113.46695 * 141.89883 * 27 12 11
41 41 H 1.08997 * 113.46980 * 272.27503 * 27 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1029 1.6962 -1.2125
5 1 1.2842 2.7465 -0.0006
6 1 3.1030 1.6963 1.2124
7 6 2.0044 -1.1941 0.0005
8 1 3.0844 -1.1942 0.0001
9 6 1.2508 -2.4992 0.0005
10 8 0.1899 -2.5423 -0.9557
11 6 2.1485 -3.7442 0.0005
12 7 1.2102 -4.3591 0.9516
13 6 0.8355 -5.6136 1.2716
14 8 1.2608 -6.5543 0.6354
15 6 -0.1119 -5.8470 2.4201
16 1 -0.0896 -4.9818 3.0826
17 6 -1.5261 -6.0223 1.8738
18 6 -2.4751 -6.3837 3.0242
19 6 -2.0357 -7.7276 3.5674
20 8 -2.8450 -8.5838 3.8541
21 6 -0.5876 -7.9581 3.7350
22 6 -0.1413 -9.0763 4.4455
23 6 1.2115 -9.2942 4.6002
24 6 2.1215 -8.4074 4.0511
25 6 1.6852 -7.2996 3.3485
26 6 0.3322 -7.0638 3.1850
27 6 0.8601 -3.0026 1.3990
28 1 -0.4849 0.8401 0.0004
29 1 -0.3737 -1.7565 -0.9536
30 1 3.1383 -3.5659 0.4211
31 1 2.1856 -4.2527 -0.9629
32 1 -1.8545 -5.0922 1.4100
33 1 -1.5331 -6.8210 1.1322
34 1 -2.4118 -5.6285 3.8078
35 1 -3.4981 -6.4500 2.6539
36 1 -0.8537 -9.7667 4.8724
37 1 1.5607 -10.1560 5.1494
38 1 3.1804 -8.5821 4.1727
39 1 2.4046 -6.6146 2.9250
40 1 -0.1993 -2.8798 1.6242
41 1 1.5058 -2.6270 2.1927
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000329128184.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:47:58
Heat of formation + Delta-G solvation = -60.223677 kcal
Electronic energy + Delta-G solvation = -26264.378797 eV
Core-core repulsion = 22496.325967 eV
Total energy + Delta-G solvation = -3768.052831 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.88442 -39.53814 -38.32468 -37.46303 -35.31875 -34.09047 -32.26308 -31.50895
-30.60675 -29.49779 -27.86020 -25.38203 -25.18137 -23.52901 -23.27392 -22.03143
-20.19668 -19.19809 -18.33925 -17.59410 -17.00326 -16.62782 -16.21142 -15.69393
-15.47290 -15.11045 -14.83711 -14.51041 -14.32818 -14.17972 -14.10877 -13.53818
-13.38664 -13.09269 -12.84577 -12.73336 -12.30821 -12.25451 -11.98335 -11.90376
-11.62406 -11.50997 -11.22845 -11.12840 -11.09631 -10.98835 -10.56218 -10.34223
-9.70853 -9.66700 -9.28267 -9.05081 -8.86592 -8.81700 -8.47607 -7.94866
-6.47373 -4.57918 0.58105 1.24772 2.30366 2.98427 3.11315 3.17909
3.19399 3.33855 3.72289 3.91913 4.12287 4.38910 4.55026 4.72748
4.76499 4.82440 4.91458 4.99903 5.11358 5.22622 5.24120 5.33184
5.41840 5.50822 5.61576 5.79385 5.82380 5.84727 5.87915 6.03392
6.09463 6.22617 6.29608 6.32047 6.35450 6.41640 6.52680 6.59154
6.77335 7.02294 7.38337 7.55904 7.72609 8.37613 8.45797 8.62145
9.13803 9.41405 10.59263
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.021679 B = 0.003450 C = 0.003217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1291.251578 B = 8113.378522 C = 8701.185065
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.073 3.927
3 Si 0.909 3.091
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.273 1.273
7 C -0.536 4.536
8 H 0.072 0.928
9 C 0.242 3.758
10 O -0.571 6.571
11 C 0.106 3.894
12 N -0.633 5.633
13 C 0.542 3.458
14 O -0.552 6.552
15 C -0.070 4.070
16 H 0.108 0.892
17 C -0.103 4.103
18 C -0.161 4.161
19 C 0.403 3.597
20 O -0.458 6.458
21 C -0.166 4.166
22 C -0.065 4.065
23 C -0.137 4.137
24 C -0.085 4.085
25 C -0.112 4.112
26 C -0.006 4.006
27 C 0.069 3.931
28 H 0.275 0.725
29 H 0.394 0.606
30 H 0.086 0.914
31 H 0.067 0.933
32 H 0.092 0.908
33 H 0.078 0.922
34 H 0.106 0.894
35 H 0.100 0.900
36 H 0.132 0.868
37 H 0.128 0.872
38 H 0.127 0.873
39 H 0.126 0.874
40 H 0.065 0.935
41 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.301 -8.978 9.377 12.986
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.129 4.129
3 Si 0.736 3.264
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.199 1.199
7 C -0.574 4.574
8 H 0.090 0.910
9 C 0.200 3.800
10 O -0.384 6.384
11 C -0.016 4.016
12 N -0.366 5.366
13 C 0.330 3.670
14 O -0.431 6.431
15 C -0.091 4.091
16 H 0.126 0.874
17 C -0.141 4.141
18 C -0.198 4.198
19 C 0.282 3.718
20 O -0.334 6.334
21 C -0.167 4.167
22 C -0.083 4.083
23 C -0.155 4.155
24 C -0.103 4.103
25 C -0.130 4.130
26 C -0.007 4.007
27 C -0.054 4.054
28 H 0.085 0.915
29 H 0.251 0.749
30 H 0.104 0.896
31 H 0.085 0.915
32 H 0.111 0.889
33 H 0.097 0.903
34 H 0.124 0.876
35 H 0.118 0.882
36 H 0.150 0.850
37 H 0.146 0.854
38 H 0.145 0.855
39 H 0.144 0.856
40 H 0.084 0.916
41 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -0.480 -10.568 9.095 13.951
hybrid contribution 0.344 1.527 0.249 1.585
sum -0.136 -9.041 9.344 13.002
Atomic orbital electron populations
1.69248 1.06204 1.28397 1.49966 1.25068 0.95028 0.99930 0.92913
0.86365 0.79502 0.81508 0.79034 1.19810 1.20955 1.19850 1.21389
0.93906 0.89741 1.52325 0.90962 1.19531 0.85378 0.90992 0.84100
1.86052 1.44986 1.48311 1.59027 1.23351 0.93749 0.92229 0.92309
1.49764 1.42242 1.04617 1.39932 1.19590 0.81732 0.81186 0.84448
1.90675 1.57799 1.41161 1.53498 1.20148 0.95901 0.97120 0.95909
0.87415 1.21430 0.90925 1.04246 0.97451 1.22325 1.01387 0.96305
0.99821 1.22781 0.87799 0.88575 0.72695 1.90505 1.56301 1.46532
1.40016 1.20194 0.94712 0.97558 1.04277 1.21320 0.96049 0.95110
0.95855 1.21123 0.92915 1.00075 1.01391 1.21330 1.00005 0.93688
0.95317 1.21122 0.94971 0.98377 0.98491 1.19584 0.93250 0.93526
0.94355 1.24317 1.00497 0.77722 1.02909 0.91460 0.74933 0.89593
0.91483 0.88944 0.90302 0.87587 0.88164 0.85000 0.85428 0.85524
0.85602 0.91617 0.89972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -21.63 11.01 55.43 0.61 -21.02 16
2 C 0.07 1.73 5.40 -17.82 -0.10 1.64 16
3 Si 0.91 18.58 29.54 -169.99 -5.02 13.56 16
4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16
5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16
6 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16
7 C -0.54 -12.70 8.70 -34.44 -0.30 -13.00 16
8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16
9 C 0.24 5.45 1.59 -91.16 -0.14 5.31 16
10 O -0.57 -14.01 13.54 -35.23 -0.48 -14.48 16
11 C 0.11 2.17 8.02 -8.52 -0.07 2.10 16
12 N -0.63 -12.27 3.69 -185.00 -0.68 -12.96 16
13 C 0.54 10.10 5.82 -10.98 -0.06 10.03 16
14 O -0.55 -11.97 16.59 5.56 0.09 -11.88 16
15 C -0.07 -1.02 2.53 -93.25 -0.24 -1.26 16
16 H 0.11 1.41 7.74 -51.93 -0.40 1.01 16
17 C -0.10 -1.37 5.13 -26.70 -0.14 -1.50 16
18 C -0.16 -1.80 6.19 -27.27 -0.17 -1.97 16
19 C 0.40 5.47 6.89 -30.12 -0.21 5.26 16
20 O -0.46 -7.17 17.26 5.58 0.10 -7.07 16
21 C -0.17 -2.28 5.82 -105.00 -0.61 -2.90 16
22 C -0.07 -0.80 9.61 -39.12 -0.38 -1.18 16
23 C -0.14 -1.48 10.04 -39.64 -0.40 -1.88 16
24 C -0.09 -0.99 10.03 -39.51 -0.40 -1.38 16
25 C -0.11 -1.55 8.56 -39.55 -0.34 -1.89 16
26 C -0.01 -0.09 5.24 -104.23 -0.55 -0.64 16
27 C 0.07 1.34 7.55 -8.42 -0.06 1.27 16
28 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16
29 H 0.39 9.78 6.33 45.56 0.29 10.07 16
30 H 0.09 1.59 8.10 -51.92 -0.42 1.17 16
31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16
32 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16
33 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16
34 H 0.11 0.99 8.14 -51.92 -0.42 0.56 16
35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16
36 H 0.13 1.47 7.72 -52.49 -0.40 1.07 16
37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16
38 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16
39 H 0.13 1.83 7.09 -52.49 -0.37 1.46 16
40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
41 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16
LS Contribution 346.22 15.07 5.22 5.22
Total: -1.00 -28.46 346.22 -8.97 -37.44
By element:
Atomic # 1 Polarization: 17.84 SS G_CDS: -4.66 Total: 13.18 kcal
Atomic # 6 Polarization: 2.16 SS G_CDS: -4.15 Total: -1.99 kcal
Atomic # 7 Polarization: -33.90 SS G_CDS: -0.07 Total: -33.97 kcal
Atomic # 8 Polarization: -33.14 SS G_CDS: -0.29 Total: -33.43 kcal
Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -28.46 -8.97 -37.44 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000329128184.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.785 kcal
(2) G-P(sol) polarization free energy of solvation -28.465 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.250 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.224 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds