Wall clock time and date at job start Tue Mar 31 2020 10:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00118 * 2 1 4 4 H 1.48503 * 109.46905 * 239.99985 * 3 2 1 5 5 H 1.48507 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47466 * 120.00327 * 3 2 1 7 7 C 1.37875 * 119.99371 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00356 * 0.02562 * 7 2 1 10 10 O 1.42896 * 113.41523 * 46.79572 * 9 7 2 11 11 C 1.53494 * 114.20568 * 179.97438 * 9 7 2 12 12 N 1.47069 * 88.05051 * 139.68070 * 11 9 7 13 13 C 1.34780 * 136.05759 * 152.80924 * 12 11 9 14 14 O 1.21273 * 119.99846 * 355.00024 * 13 12 11 15 15 C 1.50700 * 119.99538 * 175.00064 * 13 12 11 16 16 H 1.09000 * 109.11182 * 338.97929 * 15 13 12 17 17 C 1.52620 * 109.12083 * 98.13475 * 15 13 12 18 18 C 1.53444 * 109.37554 * 175.02157 * 17 15 13 19 19 C 1.51471 * 107.36210 * 295.96679 * 18 17 15 20 20 O 1.21251 * 121.17986 * 222.52620 * 19 18 17 21 21 C 1.47590 * 117.63893 * 42.50726 * 19 18 17 22 22 C 1.39792 * 119.72582 * 168.75430 * 21 19 18 23 23 C 1.37899 * 119.77468 * 179.86124 * 22 21 19 24 24 C 1.38421 * 119.94784 * 359.92075 * 23 22 21 25 25 C 1.38250 * 120.49588 * 0.12908 * 24 23 22 26 26 C 1.38310 * 120.35972 * 359.97438 * 25 24 23 27 27 C 1.47064 * 87.88097 * 332.85024 * 12 11 9 28 28 H 0.97005 * 119.99488 * 359.97438 * 1 2 3 29 29 H 0.96701 * 114.00202 * 313.20858 * 10 9 7 30 30 H 1.09007 * 113.47329 * 24.87373 * 11 9 7 31 31 H 1.08997 * 113.47032 * 254.49160 * 11 9 7 32 32 H 1.09005 * 109.47954 * 294.98813 * 17 15 13 33 33 H 1.08996 * 109.48971 * 55.04492 * 17 15 13 34 34 H 1.09010 * 109.87369 * 55.42882 * 18 17 15 35 35 H 1.09000 * 109.88042 * 176.49932 * 18 17 15 36 36 H 1.08001 * 120.11092 * 359.81277 * 22 21 19 37 37 H 1.07994 * 120.02410 * 179.91869 * 23 22 21 38 38 H 1.08007 * 119.75402 * 180.11124 * 24 23 22 39 39 H 1.07992 * 119.82319 * 179.97438 * 25 24 23 40 40 H 1.09004 * 113.46695 * 141.89883 * 27 12 11 41 41 H 1.08997 * 113.46980 * 272.27503 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 0.1899 -2.5423 -0.9557 11 6 2.1485 -3.7442 0.0005 12 7 1.2102 -4.3591 0.9516 13 6 0.8355 -5.6136 1.2716 14 8 1.2608 -6.5543 0.6354 15 6 -0.1119 -5.8470 2.4201 16 1 -0.0896 -4.9818 3.0826 17 6 -1.5261 -6.0223 1.8738 18 6 -2.4751 -6.3837 3.0242 19 6 -2.0357 -7.7276 3.5674 20 8 -2.8450 -8.5838 3.8541 21 6 -0.5876 -7.9581 3.7350 22 6 -0.1413 -9.0763 4.4455 23 6 1.2115 -9.2942 4.6002 24 6 2.1215 -8.4074 4.0511 25 6 1.6852 -7.2996 3.3485 26 6 0.3322 -7.0638 3.1850 27 6 0.8601 -3.0026 1.3990 28 1 -0.4849 0.8401 0.0004 29 1 -0.3737 -1.7565 -0.9536 30 1 3.1383 -3.5659 0.4211 31 1 2.1856 -4.2527 -0.9629 32 1 -1.8545 -5.0922 1.4100 33 1 -1.5331 -6.8210 1.1322 34 1 -2.4118 -5.6285 3.8078 35 1 -3.4981 -6.4500 2.6539 36 1 -0.8537 -9.7667 4.8724 37 1 1.5607 -10.1560 5.1494 38 1 3.1804 -8.5821 4.1727 39 1 2.4046 -6.6146 2.9250 40 1 -0.1993 -2.8798 1.6242 41 1 1.5058 -2.6270 2.1927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329128184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:58 Heat of formation + Delta-G solvation = -60.223677 kcal Electronic energy + Delta-G solvation = -26264.378797 eV Core-core repulsion = 22496.325967 eV Total energy + Delta-G solvation = -3768.052831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.88442 -39.53814 -38.32468 -37.46303 -35.31875 -34.09047 -32.26308 -31.50895 -30.60675 -29.49779 -27.86020 -25.38203 -25.18137 -23.52901 -23.27392 -22.03143 -20.19668 -19.19809 -18.33925 -17.59410 -17.00326 -16.62782 -16.21142 -15.69393 -15.47290 -15.11045 -14.83711 -14.51041 -14.32818 -14.17972 -14.10877 -13.53818 -13.38664 -13.09269 -12.84577 -12.73336 -12.30821 -12.25451 -11.98335 -11.90376 -11.62406 -11.50997 -11.22845 -11.12840 -11.09631 -10.98835 -10.56218 -10.34223 -9.70853 -9.66700 -9.28267 -9.05081 -8.86592 -8.81700 -8.47607 -7.94866 -6.47373 -4.57918 0.58105 1.24772 2.30366 2.98427 3.11315 3.17909 3.19399 3.33855 3.72289 3.91913 4.12287 4.38910 4.55026 4.72748 4.76499 4.82440 4.91458 4.99903 5.11358 5.22622 5.24120 5.33184 5.41840 5.50822 5.61576 5.79385 5.82380 5.84727 5.87915 6.03392 6.09463 6.22617 6.29608 6.32047 6.35450 6.41640 6.52680 6.59154 6.77335 7.02294 7.38337 7.55904 7.72609 8.37613 8.45797 8.62145 9.13803 9.41405 10.59263 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.003450 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.251578 B = 8113.378522 C = 8701.185065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.242 3.758 10 O -0.571 6.571 11 C 0.106 3.894 12 N -0.633 5.633 13 C 0.542 3.458 14 O -0.552 6.552 15 C -0.070 4.070 16 H 0.108 0.892 17 C -0.103 4.103 18 C -0.161 4.161 19 C 0.403 3.597 20 O -0.458 6.458 21 C -0.166 4.166 22 C -0.065 4.065 23 C -0.137 4.137 24 C -0.085 4.085 25 C -0.112 4.112 26 C -0.006 4.006 27 C 0.069 3.931 28 H 0.275 0.725 29 H 0.394 0.606 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.065 0.935 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 -8.978 9.377 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.200 3.800 10 O -0.384 6.384 11 C -0.016 4.016 12 N -0.366 5.366 13 C 0.330 3.670 14 O -0.431 6.431 15 C -0.091 4.091 16 H 0.126 0.874 17 C -0.141 4.141 18 C -0.198 4.198 19 C 0.282 3.718 20 O -0.334 6.334 21 C -0.167 4.167 22 C -0.083 4.083 23 C -0.155 4.155 24 C -0.103 4.103 25 C -0.130 4.130 26 C -0.007 4.007 27 C -0.054 4.054 28 H 0.085 0.915 29 H 0.251 0.749 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.084 0.916 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.480 -10.568 9.095 13.951 hybrid contribution 0.344 1.527 0.249 1.585 sum -0.136 -9.041 9.344 13.002 Atomic orbital electron populations 1.69248 1.06204 1.28397 1.49966 1.25068 0.95028 0.99930 0.92913 0.86365 0.79502 0.81508 0.79034 1.19810 1.20955 1.19850 1.21389 0.93906 0.89741 1.52325 0.90962 1.19531 0.85378 0.90992 0.84100 1.86052 1.44986 1.48311 1.59027 1.23351 0.93749 0.92229 0.92309 1.49764 1.42242 1.04617 1.39932 1.19590 0.81732 0.81186 0.84448 1.90675 1.57799 1.41161 1.53498 1.20148 0.95901 0.97120 0.95909 0.87415 1.21430 0.90925 1.04246 0.97451 1.22325 1.01387 0.96305 0.99821 1.22781 0.87799 0.88575 0.72695 1.90505 1.56301 1.46532 1.40016 1.20194 0.94712 0.97558 1.04277 1.21320 0.96049 0.95110 0.95855 1.21123 0.92915 1.00075 1.01391 1.21330 1.00005 0.93688 0.95317 1.21122 0.94971 0.98377 0.98491 1.19584 0.93250 0.93526 0.94355 1.24317 1.00497 0.77722 1.02909 0.91460 0.74933 0.89593 0.91483 0.88944 0.90302 0.87587 0.88164 0.85000 0.85428 0.85524 0.85602 0.91617 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.63 11.01 55.43 0.61 -21.02 16 2 C 0.07 1.73 5.40 -17.82 -0.10 1.64 16 3 Si 0.91 18.58 29.54 -169.99 -5.02 13.56 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 7 C -0.54 -12.70 8.70 -34.44 -0.30 -13.00 16 8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.24 5.45 1.59 -91.16 -0.14 5.31 16 10 O -0.57 -14.01 13.54 -35.23 -0.48 -14.48 16 11 C 0.11 2.17 8.02 -8.52 -0.07 2.10 16 12 N -0.63 -12.27 3.69 -185.00 -0.68 -12.96 16 13 C 0.54 10.10 5.82 -10.98 -0.06 10.03 16 14 O -0.55 -11.97 16.59 5.56 0.09 -11.88 16 15 C -0.07 -1.02 2.53 -93.25 -0.24 -1.26 16 16 H 0.11 1.41 7.74 -51.93 -0.40 1.01 16 17 C -0.10 -1.37 5.13 -26.70 -0.14 -1.50 16 18 C -0.16 -1.80 6.19 -27.27 -0.17 -1.97 16 19 C 0.40 5.47 6.89 -30.12 -0.21 5.26 16 20 O -0.46 -7.17 17.26 5.58 0.10 -7.07 16 21 C -0.17 -2.28 5.82 -105.00 -0.61 -2.90 16 22 C -0.07 -0.80 9.61 -39.12 -0.38 -1.18 16 23 C -0.14 -1.48 10.04 -39.64 -0.40 -1.88 16 24 C -0.09 -0.99 10.03 -39.51 -0.40 -1.38 16 25 C -0.11 -1.55 8.56 -39.55 -0.34 -1.89 16 26 C -0.01 -0.09 5.24 -104.23 -0.55 -0.64 16 27 C 0.07 1.34 7.55 -8.42 -0.06 1.27 16 28 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 29 H 0.39 9.78 6.33 45.56 0.29 10.07 16 30 H 0.09 1.59 8.10 -51.92 -0.42 1.17 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 34 H 0.11 0.99 8.14 -51.92 -0.42 0.56 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.13 1.47 7.72 -52.49 -0.40 1.07 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.13 1.83 7.09 -52.49 -0.37 1.46 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -28.46 346.22 -8.97 -37.44 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -4.66 Total: 13.18 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -4.15 Total: -1.99 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: -0.07 Total: -33.97 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.29 Total: -33.43 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.46 -8.97 -37.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329128184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.785 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds