Wall clock time and date at job start Tue Mar 31 2020 10:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00118 * 2 1 4 4 H 1.48503 * 109.46905 * 239.99985 * 3 2 1 5 5 H 1.48507 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47466 * 120.00327 * 3 2 1 7 7 C 1.37875 * 119.99371 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00356 * 0.02562 * 7 2 1 10 10 O 1.42896 * 113.41523 * 46.79572 * 9 7 2 11 11 C 1.53494 * 114.20568 * 179.97438 * 9 7 2 12 12 N 1.47069 * 88.05051 * 139.68070 * 11 9 7 13 13 C 1.34780 * 136.05759 * 152.80924 * 12 11 9 14 14 O 1.21273 * 119.99846 * 355.00024 * 13 12 11 15 15 C 1.50700 * 119.99538 * 175.00064 * 13 12 11 16 16 H 1.09000 * 109.11182 * 338.97929 * 15 13 12 17 17 C 1.52620 * 109.12083 * 98.13475 * 15 13 12 18 18 C 1.53444 * 109.37554 * 175.02157 * 17 15 13 19 19 C 1.51471 * 107.36210 * 295.96679 * 18 17 15 20 20 O 1.21251 * 121.17986 * 222.52620 * 19 18 17 21 21 C 1.47590 * 117.63893 * 42.50726 * 19 18 17 22 22 C 1.39792 * 119.72582 * 168.75430 * 21 19 18 23 23 C 1.37899 * 119.77468 * 179.86124 * 22 21 19 24 24 C 1.38421 * 119.94784 * 359.92075 * 23 22 21 25 25 C 1.38250 * 120.49588 * 0.12908 * 24 23 22 26 26 C 1.38310 * 120.35972 * 359.97438 * 25 24 23 27 27 C 1.47064 * 87.88097 * 332.85024 * 12 11 9 28 28 H 0.97005 * 119.99488 * 359.97438 * 1 2 3 29 29 H 0.96701 * 114.00202 * 313.20858 * 10 9 7 30 30 H 1.09007 * 113.47329 * 24.87373 * 11 9 7 31 31 H 1.08997 * 113.47032 * 254.49160 * 11 9 7 32 32 H 1.09005 * 109.47954 * 294.98813 * 17 15 13 33 33 H 1.08996 * 109.48971 * 55.04492 * 17 15 13 34 34 H 1.09010 * 109.87369 * 55.42882 * 18 17 15 35 35 H 1.09000 * 109.88042 * 176.49932 * 18 17 15 36 36 H 1.08001 * 120.11092 * 359.81277 * 22 21 19 37 37 H 1.07994 * 120.02410 * 179.91869 * 23 22 21 38 38 H 1.08007 * 119.75402 * 180.11124 * 24 23 22 39 39 H 1.07992 * 119.82319 * 179.97438 * 25 24 23 40 40 H 1.09004 * 113.46695 * 141.89883 * 27 12 11 41 41 H 1.08997 * 113.46980 * 272.27503 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 0.1899 -2.5423 -0.9557 11 6 2.1485 -3.7442 0.0005 12 7 1.2102 -4.3591 0.9516 13 6 0.8355 -5.6136 1.2716 14 8 1.2608 -6.5543 0.6354 15 6 -0.1119 -5.8470 2.4201 16 1 -0.0896 -4.9818 3.0826 17 6 -1.5261 -6.0223 1.8738 18 6 -2.4751 -6.3837 3.0242 19 6 -2.0357 -7.7276 3.5674 20 8 -2.8450 -8.5838 3.8541 21 6 -0.5876 -7.9581 3.7350 22 6 -0.1413 -9.0763 4.4455 23 6 1.2115 -9.2942 4.6002 24 6 2.1215 -8.4074 4.0511 25 6 1.6852 -7.2996 3.3485 26 6 0.3322 -7.0638 3.1850 27 6 0.8601 -3.0026 1.3990 28 1 -0.4849 0.8401 0.0004 29 1 -0.3737 -1.7565 -0.9536 30 1 3.1383 -3.5659 0.4211 31 1 2.1856 -4.2527 -0.9629 32 1 -1.8545 -5.0922 1.4100 33 1 -1.5331 -6.8210 1.1322 34 1 -2.4118 -5.6285 3.8078 35 1 -3.4981 -6.4500 2.6539 36 1 -0.8537 -9.7667 4.8724 37 1 1.5607 -10.1560 5.1494 38 1 3.1804 -8.5821 4.1727 39 1 2.4046 -6.6146 2.9250 40 1 -0.1993 -2.8798 1.6242 41 1 1.5058 -2.6270 2.1927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329128184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:57 Heat of formation + Delta-G solvation = -77.620929 kcal Electronic energy + Delta-G solvation = -26265.133199 eV Core-core repulsion = 22496.325967 eV Total energy + Delta-G solvation = -3768.807232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.05997 -40.97609 -39.55727 -38.81867 -36.46601 -35.87253 -34.09957 -32.54517 -31.56509 -30.91830 -29.20545 -27.06068 -26.78607 -24.55792 -24.26223 -23.22183 -21.74844 -20.24297 -19.85362 -19.29200 -18.13592 -18.05783 -17.32287 -17.10444 -16.74470 -16.62127 -16.19513 -15.89470 -15.69925 -15.30350 -15.27989 -14.88264 -14.53891 -14.43578 -14.31994 -14.13050 -13.73571 -13.38282 -13.32787 -13.25599 -12.97712 -12.77072 -12.74382 -12.56559 -12.22916 -12.21147 -12.14751 -12.04351 -11.35911 -10.90734 -10.70564 -10.62185 -10.21963 -10.03211 -9.81955 -9.57862 -8.25593 -6.42110 -0.41448 0.27139 1.29731 1.50094 1.51671 1.53891 1.59651 1.89562 2.42414 2.69992 2.94157 2.97087 3.25941 3.41693 3.60296 3.76057 3.79906 3.98045 4.03671 4.10613 4.14833 4.19536 4.32190 4.37605 4.44851 4.50326 4.64703 4.68240 4.76196 4.82070 4.87291 4.89206 4.93984 4.98570 5.02997 5.25412 5.26819 5.36787 5.41203 5.75135 5.84179 5.93293 6.35445 6.63302 6.85189 7.09636 7.31914 7.52006 8.80131 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.003450 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.251578 B = 8113.378522 C = 8701.185065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.036 3.964 3 Si 0.967 3.033 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.219 3.781 10 O -0.586 6.586 11 C 0.105 3.895 12 N -0.634 5.634 13 C 0.541 3.459 14 O -0.587 6.587 15 C -0.062 4.062 16 H 0.126 0.874 17 C -0.099 4.099 18 C -0.150 4.150 19 C 0.403 3.597 20 O -0.484 6.484 21 C -0.182 4.182 22 C -0.072 4.072 23 C -0.128 4.128 24 C -0.082 4.082 25 C -0.132 4.132 26 C -0.021 4.021 27 C 0.085 3.915 28 H 0.277 0.723 29 H 0.390 0.610 30 H 0.106 0.894 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.142 0.858 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -9.091 11.199 14.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.165 4.165 3 Si 0.792 3.208 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.591 4.591 8 H 0.092 0.908 9 C 0.178 3.822 10 O -0.399 6.399 11 C -0.018 4.018 12 N -0.366 5.366 13 C 0.332 3.668 14 O -0.468 6.468 15 C -0.083 4.083 16 H 0.143 0.857 17 C -0.137 4.137 18 C -0.187 4.187 19 C 0.284 3.716 20 O -0.362 6.362 21 C -0.183 4.183 22 C -0.090 4.090 23 C -0.145 4.145 24 C -0.100 4.100 25 C -0.150 4.150 26 C -0.022 4.022 27 C -0.038 4.038 28 H 0.087 0.913 29 H 0.246 0.754 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.133 0.867 36 H 0.160 0.840 37 H 0.181 0.819 38 H 0.171 0.829 39 H 0.131 0.869 40 H 0.088 0.912 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.078 -10.679 10.927 15.279 hybrid contribution 0.283 1.492 -0.357 1.560 sum 0.206 -9.187 10.570 14.006 Atomic orbital electron populations 1.69309 1.07062 1.28994 1.50222 1.25705 0.95724 1.02467 0.92617 0.85464 0.78293 0.78139 0.78883 1.20226 1.20929 1.19097 1.21631 0.94195 0.90557 1.52751 0.90787 1.19817 0.85471 0.91515 0.85424 1.86039 1.45546 1.48116 1.60220 1.23359 0.94705 0.91470 0.92234 1.49786 1.42090 1.05044 1.39674 1.20291 0.81523 0.80204 0.84832 1.90648 1.59132 1.42039 1.54993 1.20148 0.95259 0.98351 0.94508 0.85672 1.21389 0.90726 1.03658 0.97896 1.22321 1.01285 0.95629 0.99512 1.23071 0.87660 0.89013 0.71873 1.90495 1.56774 1.47392 1.41518 1.20318 0.94741 0.98158 1.05096 1.21598 0.97165 0.94738 0.95488 1.21512 0.92056 1.00558 1.00400 1.21668 1.01691 0.92628 0.94037 1.21193 0.94652 0.99469 0.99693 1.19571 0.93701 0.93768 0.95142 1.24093 1.00985 0.77268 1.01431 0.91348 0.75447 0.87653 0.93176 0.88759 0.92175 0.85006 0.86740 0.84046 0.81950 0.82863 0.86920 0.91240 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -43.79 11.01 21.45 0.24 -43.55 16 2 C 0.04 1.66 5.40 84.65 0.46 2.12 16 3 Si 0.97 37.45 29.54 68.60 2.03 39.47 16 4 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.55 -26.05 8.70 25.60 0.22 -25.83 16 8 H 0.07 3.36 7.81 -2.91 -0.02 3.34 16 9 C 0.22 9.88 1.59 -11.15 -0.02 9.87 16 10 O -0.59 -29.23 13.54 -148.98 -2.02 -31.25 16 11 C 0.10 4.33 8.02 83.17 0.67 4.99 16 12 N -0.63 -24.47 3.69 -858.01 -3.17 -27.64 16 13 C 0.54 20.19 5.82 87.66 0.51 20.70 16 14 O -0.59 -25.89 16.59 -3.01 -0.05 -25.94 16 15 C -0.06 -1.77 2.53 -12.50 -0.03 -1.81 16 16 H 0.13 3.08 7.74 -2.39 -0.02 3.07 16 17 C -0.10 -2.56 5.13 30.62 0.16 -2.40 16 18 C -0.15 -3.11 6.19 30.24 0.19 -2.93 16 19 C 0.40 10.50 6.89 28.40 0.20 10.69 16 20 O -0.48 -14.73 17.26 -2.94 -0.05 -14.78 16 21 C -0.18 -4.80 5.82 -20.11 -0.12 -4.91 16 22 C -0.07 -1.63 9.61 22.57 0.22 -1.41 16 23 C -0.13 -2.39 10.04 22.23 0.22 -2.17 16 24 C -0.08 -1.72 10.03 22.32 0.22 -1.50 16 25 C -0.13 -3.57 8.56 22.29 0.19 -3.38 16 26 C -0.02 -0.59 5.24 -19.61 -0.10 -0.69 16 27 C 0.08 3.25 7.55 83.23 0.63 3.88 16 28 H 0.28 12.61 8.31 -92.70 -0.77 11.84 16 29 H 0.39 19.68 6.33 -74.06 -0.47 19.21 16 30 H 0.11 3.87 8.10 -2.38 -0.02 3.85 16 31 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 34 H 0.13 2.08 8.14 -2.38 -0.02 2.07 16 35 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.14 2.89 7.72 -2.91 -0.02 2.87 16 37 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 39 H 0.11 3.28 7.09 -2.91 -0.02 3.26 16 40 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 41 H 0.10 3.42 8.10 -2.39 -0.02 3.40 16 Total: -1.00 -61.19 346.22 1.18 -60.00 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: 0.60 Total: 38.46 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 3.61 Total: 5.23 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -2.93 Total: -71.19 kcal Atomic # 8 Polarization: -69.86 SS G_CDS: -2.12 Total: -71.97 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.47 kcal Total: -61.19 1.18 -60.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329128184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.618 kcal (2) G-P(sol) polarization free energy of solvation -61.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds