Wall clock time and date at job start Tue Mar 31 2020 10:47:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86792 * 120.00118 * 2 1
4 4 H 1.48503 * 109.46905 * 239.99985 * 3 2 1
5 5 H 1.48507 * 109.47396 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47466 * 120.00327 * 3 2 1
7 7 C 1.37875 * 119.99371 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99891 * 179.97438 * 7 2 1
9 9 C 1.50701 * 120.00356 * 0.02562 * 7 2 1
10 10 O 1.42896 * 113.41523 * 46.79572 * 9 7 2
11 11 C 1.53494 * 114.20568 * 179.97438 * 9 7 2
12 12 N 1.47069 * 88.05051 * 139.68070 * 11 9 7
13 13 C 1.34780 * 136.05759 * 152.80924 * 12 11 9
14 14 O 1.21273 * 119.99846 * 355.00024 * 13 12 11
15 15 C 1.50700 * 119.99538 * 175.00064 * 13 12 11
16 16 H 1.09000 * 109.11182 * 338.97929 * 15 13 12
17 17 C 1.52620 * 109.12083 * 98.13475 * 15 13 12
18 18 C 1.53444 * 109.37554 * 175.02157 * 17 15 13
19 19 C 1.51471 * 107.36210 * 295.96679 * 18 17 15
20 20 O 1.21251 * 121.17986 * 222.52620 * 19 18 17
21 21 C 1.47590 * 117.63893 * 42.50726 * 19 18 17
22 22 C 1.39792 * 119.72582 * 168.75430 * 21 19 18
23 23 C 1.37899 * 119.77468 * 179.86124 * 22 21 19
24 24 C 1.38421 * 119.94784 * 359.92075 * 23 22 21
25 25 C 1.38250 * 120.49588 * 0.12908 * 24 23 22
26 26 C 1.38310 * 120.35972 * 359.97438 * 25 24 23
27 27 C 1.47064 * 87.88097 * 332.85024 * 12 11 9
28 28 H 0.97005 * 119.99488 * 359.97438 * 1 2 3
29 29 H 0.96701 * 114.00202 * 313.20858 * 10 9 7
30 30 H 1.09007 * 113.47329 * 24.87373 * 11 9 7
31 31 H 1.08997 * 113.47032 * 254.49160 * 11 9 7
32 32 H 1.09005 * 109.47954 * 294.98813 * 17 15 13
33 33 H 1.08996 * 109.48971 * 55.04492 * 17 15 13
34 34 H 1.09010 * 109.87369 * 55.42882 * 18 17 15
35 35 H 1.09000 * 109.88042 * 176.49932 * 18 17 15
36 36 H 1.08001 * 120.11092 * 359.81277 * 22 21 19
37 37 H 1.07994 * 120.02410 * 179.91869 * 23 22 21
38 38 H 1.08007 * 119.75402 * 180.11124 * 24 23 22
39 39 H 1.07992 * 119.82319 * 179.97438 * 25 24 23
40 40 H 1.09004 * 113.46695 * 141.89883 * 27 12 11
41 41 H 1.08997 * 113.46980 * 272.27503 * 27 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1029 1.6962 -1.2125
5 1 1.2842 2.7465 -0.0006
6 1 3.1030 1.6963 1.2124
7 6 2.0044 -1.1941 0.0005
8 1 3.0844 -1.1942 0.0001
9 6 1.2508 -2.4992 0.0005
10 8 0.1899 -2.5423 -0.9557
11 6 2.1485 -3.7442 0.0005
12 7 1.2102 -4.3591 0.9516
13 6 0.8355 -5.6136 1.2716
14 8 1.2608 -6.5543 0.6354
15 6 -0.1119 -5.8470 2.4201
16 1 -0.0896 -4.9818 3.0826
17 6 -1.5261 -6.0223 1.8738
18 6 -2.4751 -6.3837 3.0242
19 6 -2.0357 -7.7276 3.5674
20 8 -2.8450 -8.5838 3.8541
21 6 -0.5876 -7.9581 3.7350
22 6 -0.1413 -9.0763 4.4455
23 6 1.2115 -9.2942 4.6002
24 6 2.1215 -8.4074 4.0511
25 6 1.6852 -7.2996 3.3485
26 6 0.3322 -7.0638 3.1850
27 6 0.8601 -3.0026 1.3990
28 1 -0.4849 0.8401 0.0004
29 1 -0.3737 -1.7565 -0.9536
30 1 3.1383 -3.5659 0.4211
31 1 2.1856 -4.2527 -0.9629
32 1 -1.8545 -5.0922 1.4100
33 1 -1.5331 -6.8210 1.1322
34 1 -2.4118 -5.6285 3.8078
35 1 -3.4981 -6.4500 2.6539
36 1 -0.8537 -9.7667 4.8724
37 1 1.5607 -10.1560 5.1494
38 1 3.1804 -8.5821 4.1727
39 1 2.4046 -6.6146 2.9250
40 1 -0.1993 -2.8798 1.6242
41 1 1.5058 -2.6270 2.1927
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000329128184.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:47:57
Heat of formation + Delta-G solvation = -77.620929 kcal
Electronic energy + Delta-G solvation = -26265.133199 eV
Core-core repulsion = 22496.325967 eV
Total energy + Delta-G solvation = -3768.807232 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.05997 -40.97609 -39.55727 -38.81867 -36.46601 -35.87253 -34.09957 -32.54517
-31.56509 -30.91830 -29.20545 -27.06068 -26.78607 -24.55792 -24.26223 -23.22183
-21.74844 -20.24297 -19.85362 -19.29200 -18.13592 -18.05783 -17.32287 -17.10444
-16.74470 -16.62127 -16.19513 -15.89470 -15.69925 -15.30350 -15.27989 -14.88264
-14.53891 -14.43578 -14.31994 -14.13050 -13.73571 -13.38282 -13.32787 -13.25599
-12.97712 -12.77072 -12.74382 -12.56559 -12.22916 -12.21147 -12.14751 -12.04351
-11.35911 -10.90734 -10.70564 -10.62185 -10.21963 -10.03211 -9.81955 -9.57862
-8.25593 -6.42110 -0.41448 0.27139 1.29731 1.50094 1.51671 1.53891
1.59651 1.89562 2.42414 2.69992 2.94157 2.97087 3.25941 3.41693
3.60296 3.76057 3.79906 3.98045 4.03671 4.10613 4.14833 4.19536
4.32190 4.37605 4.44851 4.50326 4.64703 4.68240 4.76196 4.82070
4.87291 4.89206 4.93984 4.98570 5.02997 5.25412 5.26819 5.36787
5.41203 5.75135 5.84179 5.93293 6.35445 6.63302 6.85189 7.09636
7.31914 7.52006 8.80131
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.021679 B = 0.003450 C = 0.003217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1291.251578 B = 8113.378522 C = 8701.185065
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C 0.036 3.964
3 Si 0.967 3.033
4 H -0.277 1.277
5 H -0.284 1.284
6 H -0.266 1.266
7 C -0.553 4.553
8 H 0.074 0.926
9 C 0.219 3.781
10 O -0.586 6.586
11 C 0.105 3.895
12 N -0.634 5.634
13 C 0.541 3.459
14 O -0.587 6.587
15 C -0.062 4.062
16 H 0.126 0.874
17 C -0.099 4.099
18 C -0.150 4.150
19 C 0.403 3.597
20 O -0.484 6.484
21 C -0.182 4.182
22 C -0.072 4.072
23 C -0.128 4.128
24 C -0.082 4.082
25 C -0.132 4.132
26 C -0.021 4.021
27 C 0.085 3.915
28 H 0.277 0.723
29 H 0.390 0.610
30 H 0.106 0.894
31 H 0.050 0.950
32 H 0.094 0.906
33 H 0.059 0.941
34 H 0.132 0.868
35 H 0.114 0.886
36 H 0.142 0.858
37 H 0.163 0.837
38 H 0.154 0.846
39 H 0.113 0.887
40 H 0.069 0.931
41 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.096 -9.091 11.199 14.425
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.165 4.165
3 Si 0.792 3.208
4 H -0.202 1.202
5 H -0.209 1.209
6 H -0.191 1.191
7 C -0.591 4.591
8 H 0.092 0.908
9 C 0.178 3.822
10 O -0.399 6.399
11 C -0.018 4.018
12 N -0.366 5.366
13 C 0.332 3.668
14 O -0.468 6.468
15 C -0.083 4.083
16 H 0.143 0.857
17 C -0.137 4.137
18 C -0.187 4.187
19 C 0.284 3.716
20 O -0.362 6.362
21 C -0.183 4.183
22 C -0.090 4.090
23 C -0.145 4.145
24 C -0.100 4.100
25 C -0.150 4.150
26 C -0.022 4.022
27 C -0.038 4.038
28 H 0.087 0.913
29 H 0.246 0.754
30 H 0.123 0.877
31 H 0.068 0.932
32 H 0.112 0.888
33 H 0.078 0.922
34 H 0.150 0.850
35 H 0.133 0.867
36 H 0.160 0.840
37 H 0.181 0.819
38 H 0.171 0.829
39 H 0.131 0.869
40 H 0.088 0.912
41 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -0.078 -10.679 10.927 15.279
hybrid contribution 0.283 1.492 -0.357 1.560
sum 0.206 -9.187 10.570 14.006
Atomic orbital electron populations
1.69309 1.07062 1.28994 1.50222 1.25705 0.95724 1.02467 0.92617
0.85464 0.78293 0.78139 0.78883 1.20226 1.20929 1.19097 1.21631
0.94195 0.90557 1.52751 0.90787 1.19817 0.85471 0.91515 0.85424
1.86039 1.45546 1.48116 1.60220 1.23359 0.94705 0.91470 0.92234
1.49786 1.42090 1.05044 1.39674 1.20291 0.81523 0.80204 0.84832
1.90648 1.59132 1.42039 1.54993 1.20148 0.95259 0.98351 0.94508
0.85672 1.21389 0.90726 1.03658 0.97896 1.22321 1.01285 0.95629
0.99512 1.23071 0.87660 0.89013 0.71873 1.90495 1.56774 1.47392
1.41518 1.20318 0.94741 0.98158 1.05096 1.21598 0.97165 0.94738
0.95488 1.21512 0.92056 1.00558 1.00400 1.21668 1.01691 0.92628
0.94037 1.21193 0.94652 0.99469 0.99693 1.19571 0.93701 0.93768
0.95142 1.24093 1.00985 0.77268 1.01431 0.91348 0.75447 0.87653
0.93176 0.88759 0.92175 0.85006 0.86740 0.84046 0.81950 0.82863
0.86920 0.91240 0.88484
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -43.79 11.01 21.45 0.24 -43.55 16
2 C 0.04 1.66 5.40 84.65 0.46 2.12 16
3 Si 0.97 37.45 29.54 68.60 2.03 39.47 16
4 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16
5 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16
6 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16
7 C -0.55 -26.05 8.70 25.60 0.22 -25.83 16
8 H 0.07 3.36 7.81 -2.91 -0.02 3.34 16
9 C 0.22 9.88 1.59 -11.15 -0.02 9.87 16
10 O -0.59 -29.23 13.54 -148.98 -2.02 -31.25 16
11 C 0.10 4.33 8.02 83.17 0.67 4.99 16
12 N -0.63 -24.47 3.69 -858.01 -3.17 -27.64 16
13 C 0.54 20.19 5.82 87.66 0.51 20.70 16
14 O -0.59 -25.89 16.59 -3.01 -0.05 -25.94 16
15 C -0.06 -1.77 2.53 -12.50 -0.03 -1.81 16
16 H 0.13 3.08 7.74 -2.39 -0.02 3.07 16
17 C -0.10 -2.56 5.13 30.62 0.16 -2.40 16
18 C -0.15 -3.11 6.19 30.24 0.19 -2.93 16
19 C 0.40 10.50 6.89 28.40 0.20 10.69 16
20 O -0.48 -14.73 17.26 -2.94 -0.05 -14.78 16
21 C -0.18 -4.80 5.82 -20.11 -0.12 -4.91 16
22 C -0.07 -1.63 9.61 22.57 0.22 -1.41 16
23 C -0.13 -2.39 10.04 22.23 0.22 -2.17 16
24 C -0.08 -1.72 10.03 22.32 0.22 -1.50 16
25 C -0.13 -3.57 8.56 22.29 0.19 -3.38 16
26 C -0.02 -0.59 5.24 -19.61 -0.10 -0.69 16
27 C 0.08 3.25 7.55 83.23 0.63 3.88 16
28 H 0.28 12.61 8.31 -92.70 -0.77 11.84 16
29 H 0.39 19.68 6.33 -74.06 -0.47 19.21 16
30 H 0.11 3.87 8.10 -2.38 -0.02 3.85 16
31 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16
32 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16
33 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16
34 H 0.13 2.08 8.14 -2.38 -0.02 2.07 16
35 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16
36 H 0.14 2.89 7.72 -2.91 -0.02 2.87 16
37 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16
38 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16
39 H 0.11 3.28 7.09 -2.91 -0.02 3.26 16
40 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16
41 H 0.10 3.42 8.10 -2.39 -0.02 3.40 16
Total: -1.00 -61.19 346.22 1.18 -60.00
By element:
Atomic # 1 Polarization: 37.87 SS G_CDS: 0.60 Total: 38.46 kcal
Atomic # 6 Polarization: 1.61 SS G_CDS: 3.61 Total: 5.23 kcal
Atomic # 7 Polarization: -68.26 SS G_CDS: -2.93 Total: -71.19 kcal
Atomic # 8 Polarization: -69.86 SS G_CDS: -2.12 Total: -71.97 kcal
Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.47 kcal
Total: -61.19 1.18 -60.00 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000329128184.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.618 kcal
(2) G-P(sol) polarization free energy of solvation -61.187 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.805 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.621 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds