Wall clock time and date at job start Tue Mar 31 2020 11:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48506 * 109.47045 * 239.99949 * 3 2 1 5 5 H 1.48498 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47158 * 120.00098 * 3 2 1 7 7 C 1.37885 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99924 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00049 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46862 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00122 * 270.00031 * 10 9 7 12 12 C 1.53002 * 109.46855 * 274.86647 * 11 10 9 13 13 C 1.52995 * 117.49796 * 244.48621 * 12 11 10 14 14 C 1.53001 * 60.00176 * 252.51214 * 13 12 11 15 15 C 1.34781 * 119.99910 * 90.00139 * 10 9 7 16 16 O 1.21278 * 119.99854 * 184.97473 * 15 10 9 17 17 C 1.50694 * 120.00040 * 4.97431 * 15 10 9 18 18 H 1.09006 * 109.54957 * 33.60810 * 17 15 10 19 19 C 1.53030 * 109.55063 * 273.32121 * 17 15 10 20 20 C 1.52595 * 109.98789 * 176.49820 * 19 17 15 21 21 C 1.52583 * 110.64231 * 69.98698 * 20 19 17 22 22 C 1.53036 * 109.98502 * 290.01273 * 21 20 19 23 23 S 1.81668 * 109.55099 * 153.80375 * 17 15 10 24 24 O 1.42104 * 108.66251 * 288.48279 * 23 17 15 25 25 O 1.42101 * 108.66406 * 59.82293 * 23 17 15 26 26 H 0.96997 * 119.99540 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46851 * 60.00322 * 9 7 2 28 28 H 1.09001 * 109.46541 * 300.00134 * 9 7 2 29 29 H 1.08997 * 109.47060 * 34.86117 * 11 10 9 30 30 H 1.08994 * 109.47526 * 154.86954 * 11 10 9 31 31 H 1.09003 * 115.55372 * 30.19609 * 12 11 10 32 32 H 1.09002 * 117.50192 * 0.02562 * 13 12 11 33 33 H 1.09002 * 117.49729 * 145.02327 * 13 12 11 34 34 H 1.09006 * 117.49692 * 252.50770 * 14 13 12 35 35 H 1.08992 * 117.51535 * 107.48251 * 14 13 12 36 36 H 1.09003 * 109.38982 * 296.65402 * 19 17 15 37 37 H 1.09003 * 109.38870 * 56.33804 * 19 17 15 38 38 H 1.09002 * 109.24437 * 190.28447 * 20 19 17 39 39 H 1.09001 * 109.23775 * 309.68425 * 20 19 17 40 40 H 1.08999 * 109.39054 * 50.17046 * 21 20 19 41 41 H 1.08996 * 109.38536 * 169.96401 * 21 20 19 42 42 H 1.09002 * 109.55244 * 303.79832 * 22 21 20 43 43 H 1.09001 * 109.55341 * 183.50659 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6791 -4.1694 -1.2692 12 6 1.6835 -5.2168 -1.7720 13 6 2.1676 -6.6653 -1.8630 14 6 1.9532 -5.8488 -3.1391 15 6 2.6410 -4.1249 1.1667 16 8 3.4961 -4.9849 1.1687 17 6 2.0681 -3.6290 2.4693 18 1 1.0179 -3.3716 2.3314 19 6 2.8435 -2.3937 2.9325 20 6 2.2172 -1.8317 4.2055 21 6 2.4621 -2.7688 5.3845 22 6 1.6410 -4.0490 5.2146 23 16 2.2151 -4.9273 3.7315 24 8 1.2895 -5.9623 3.4292 25 8 3.5896 -5.2477 3.8964 26 1 -0.4849 0.8401 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5570 0.8897 29 1 2.7691 -3.3708 -2.0055 30 1 3.6524 -4.6363 -1.1187 31 1 0.6436 -5.0500 -1.4910 32 1 3.1952 -6.8722 -1.5642 33 1 1.4461 -7.4518 -1.6416 34 1 1.0907 -6.0983 -3.7572 35 1 2.8396 -5.5183 -3.6803 36 1 3.8793 -2.6699 3.1305 37 1 2.8162 -1.6350 2.1504 38 1 2.6571 -0.8584 4.4229 39 1 1.1438 -1.7149 4.0563 40 1 3.5213 -3.0220 5.4316 41 1 2.1675 -2.2719 6.3088 42 1 0.5871 -3.7942 5.1024 43 1 1.7726 -4.6857 6.0894 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329656254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:45 Heat of formation + Delta-G solvation = -88.209504 kcal Electronic energy + Delta-G solvation = -26156.059080 eV Core-core repulsion = 22522.236644 eV Total energy + Delta-G solvation = -3633.822436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.59610 -37.27026 -36.84712 -36.27869 -35.65716 -34.85703 -32.63210 -31.81036 -28.33424 -27.68642 -26.05989 -23.68467 -23.14528 -22.07832 -20.81913 -20.57093 -19.07106 -18.32137 -16.99272 -16.74648 -16.56552 -15.93916 -15.59759 -15.33144 -14.90623 -14.61572 -14.48187 -14.21225 -13.89036 -13.52089 -13.42278 -12.89144 -12.63781 -12.45874 -12.06059 -11.81639 -11.71001 -11.67480 -11.62082 -11.37773 -11.34761 -11.25719 -11.14318 -11.00535 -10.83304 -10.72719 -10.40325 -10.30497 -10.18654 -9.88010 -9.80185 -9.60199 -9.25794 -8.67352 -7.89287 -6.31620 -4.38588 0.20797 2.91763 3.09029 3.13988 3.20607 3.23905 3.52096 4.00273 4.14702 4.17583 4.23112 4.63076 4.72411 4.84546 4.97636 5.01810 5.06942 5.08670 5.21180 5.24639 5.32695 5.44403 5.57104 5.65237 5.75845 5.85646 5.87999 5.92403 6.05614 6.15418 6.16339 6.19369 6.37161 6.38172 6.52642 6.67292 6.73319 7.02922 7.35333 7.62481 7.91145 8.11505 8.59386 8.76275 9.27977 10.74800 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.007662 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.251119 B = 3653.706161 C = 6076.088074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.233 3.767 10 N -0.579 5.579 11 C 0.146 3.854 12 C -0.164 4.164 13 C -0.178 4.178 14 C -0.177 4.177 15 C 0.544 3.456 16 O -0.555 6.555 17 C -0.584 4.584 18 H 0.157 0.843 19 C -0.110 4.110 20 C -0.136 4.136 21 C -0.110 4.110 22 C -0.611 4.611 23 S 2.435 3.565 24 O -0.944 6.944 25 O -0.916 6.916 26 H 0.267 0.733 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.132 0.868 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 -4.044 5.580 6.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.114 3.886 10 N -0.308 5.308 11 C 0.023 3.977 12 C -0.184 4.184 13 C -0.215 4.215 14 C -0.215 4.215 15 C 0.329 3.671 16 O -0.436 6.436 17 C -0.694 4.694 18 H 0.175 0.825 19 C -0.148 4.148 20 C -0.173 4.173 21 C -0.149 4.149 22 C -0.740 4.740 23 S 2.614 3.386 24 O -0.941 6.941 25 O -0.913 6.913 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.145 0.855 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.151 0.849 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.437 -5.217 5.468 7.693 hybrid contribution -0.299 1.907 0.030 1.931 sum 1.138 -3.310 5.498 6.518 Atomic orbital electron populations 1.69905 1.05989 1.27575 1.48997 1.24923 0.94827 0.99173 0.94613 0.86618 0.79621 0.82635 0.79026 1.20078 1.21124 1.19893 1.21390 0.93612 0.90218 1.52449 0.91805 1.19546 0.87692 0.82528 0.98852 1.48023 1.44847 1.34024 1.03867 1.20946 0.96106 0.95236 0.85396 1.22786 1.01048 0.94608 0.99930 1.23011 1.02567 0.94429 1.01452 1.22891 1.03113 1.04816 0.90671 1.19039 0.81974 0.81583 0.84471 1.90765 1.32165 1.33486 1.87160 1.30450 1.11138 1.16841 1.11011 0.82545 1.21489 0.97813 0.95700 0.99800 1.21669 1.02892 0.99720 0.93020 1.21338 0.99953 0.92879 1.00685 1.30346 1.11394 1.11144 1.21133 1.07833 0.75885 0.76701 0.78164 1.93549 1.65567 1.51595 1.83375 1.93551 1.31728 1.81451 1.84612 0.92323 0.94174 0.94234 0.89720 0.90132 0.87624 0.88611 0.89268 0.89076 0.88883 0.90296 0.85466 0.89606 0.90302 0.89881 0.89863 0.84919 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.60 13.29 55.43 0.74 -21.86 16 2 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 19.09 29.54 -169.99 -5.02 14.07 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.54 -12.71 7.14 -34.44 -0.25 -12.95 16 8 H 0.06 1.54 7.70 -52.48 -0.40 1.13 16 9 C 0.23 5.14 4.99 -5.19 -0.03 5.11 16 10 N -0.58 -11.83 2.46 -175.07 -0.43 -12.26 16 11 C 0.15 2.69 5.78 -4.04 -0.02 2.66 16 12 C -0.16 -2.70 6.01 -90.62 -0.54 -3.25 16 13 C -0.18 -2.66 10.18 -26.73 -0.27 -2.93 16 14 C -0.18 -2.38 10.25 -26.73 -0.27 -2.66 16 15 C 0.54 11.33 6.78 -10.99 -0.07 11.25 16 16 O -0.56 -12.82 14.98 -9.61 -0.14 -12.96 16 17 C -0.58 -10.19 2.09 -27.87 -0.06 -10.25 16 18 H 0.16 2.52 6.13 -51.92 -0.32 2.20 16 19 C -0.11 -1.76 4.97 -26.92 -0.13 -1.90 16 20 C -0.14 -1.69 5.63 -27.15 -0.15 -1.84 16 21 C -0.11 -1.18 5.73 -26.93 -0.15 -1.34 16 22 C -0.61 -6.82 6.35 37.18 0.24 -6.59 16 23 S 2.43 40.35 4.33 -107.50 -0.47 39.89 16 24 O -0.94 -18.29 18.10 -57.81 -1.05 -19.34 16 25 O -0.92 -17.94 17.04 -64.34 -1.10 -19.03 16 26 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.04 0.88 5.79 -51.93 -0.30 0.57 16 29 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 30 H 0.08 1.50 6.96 -51.93 -0.36 1.14 16 31 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 32 H 0.10 1.47 8.03 -51.93 -0.42 1.05 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 37 H 0.13 2.35 5.47 -51.93 -0.28 2.07 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 40 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -31.40 356.23 -10.62 -42.01 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.70 Total: 7.21 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -1.82 Total: -23.11 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.31 Total: -34.12 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -2.29 Total: -51.33 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 16 Polarization: 40.35 SS G_CDS: -0.47 Total: 39.89 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.40 -10.62 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329656254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.198 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds