Wall clock time and date at job start Tue Mar 31 2020 11:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00077 * 2 1 4 4 H 1.48506 * 109.47045 * 239.99949 * 3 2 1 5 5 H 1.48498 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47158 * 120.00098 * 3 2 1 7 7 C 1.37885 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99924 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00049 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46862 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00122 * 270.00031 * 10 9 7 12 12 C 1.53002 * 109.46855 * 274.86647 * 11 10 9 13 13 C 1.52995 * 117.49796 * 244.48621 * 12 11 10 14 14 C 1.53001 * 60.00176 * 252.51214 * 13 12 11 15 15 C 1.34781 * 119.99910 * 90.00139 * 10 9 7 16 16 O 1.21278 * 119.99854 * 184.97473 * 15 10 9 17 17 C 1.50694 * 120.00040 * 4.97431 * 15 10 9 18 18 H 1.09006 * 109.54957 * 33.60810 * 17 15 10 19 19 C 1.53030 * 109.55063 * 273.32121 * 17 15 10 20 20 C 1.52595 * 109.98789 * 176.49820 * 19 17 15 21 21 C 1.52583 * 110.64231 * 69.98698 * 20 19 17 22 22 C 1.53036 * 109.98502 * 290.01273 * 21 20 19 23 23 S 1.81668 * 109.55099 * 153.80375 * 17 15 10 24 24 O 1.42104 * 108.66251 * 288.48279 * 23 17 15 25 25 O 1.42101 * 108.66406 * 59.82293 * 23 17 15 26 26 H 0.96997 * 119.99540 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46851 * 60.00322 * 9 7 2 28 28 H 1.09001 * 109.46541 * 300.00134 * 9 7 2 29 29 H 1.08997 * 109.47060 * 34.86117 * 11 10 9 30 30 H 1.08994 * 109.47526 * 154.86954 * 11 10 9 31 31 H 1.09003 * 115.55372 * 30.19609 * 12 11 10 32 32 H 1.09002 * 117.50192 * 0.02562 * 13 12 11 33 33 H 1.09002 * 117.49729 * 145.02327 * 13 12 11 34 34 H 1.09006 * 117.49692 * 252.50770 * 14 13 12 35 35 H 1.08992 * 117.51535 * 107.48251 * 14 13 12 36 36 H 1.09003 * 109.38982 * 296.65402 * 19 17 15 37 37 H 1.09003 * 109.38870 * 56.33804 * 19 17 15 38 38 H 1.09002 * 109.24437 * 190.28447 * 20 19 17 39 39 H 1.09001 * 109.23775 * 309.68425 * 20 19 17 40 40 H 1.08999 * 109.39054 * 50.17046 * 21 20 19 41 41 H 1.08996 * 109.38536 * 169.96401 * 21 20 19 42 42 H 1.09002 * 109.55244 * 303.79832 * 22 21 20 43 43 H 1.09001 * 109.55341 * 183.50659 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6791 -4.1694 -1.2692 12 6 1.6835 -5.2168 -1.7720 13 6 2.1676 -6.6653 -1.8630 14 6 1.9532 -5.8488 -3.1391 15 6 2.6410 -4.1249 1.1667 16 8 3.4961 -4.9849 1.1687 17 6 2.0681 -3.6290 2.4693 18 1 1.0179 -3.3716 2.3314 19 6 2.8435 -2.3937 2.9325 20 6 2.2172 -1.8317 4.2055 21 6 2.4621 -2.7688 5.3845 22 6 1.6410 -4.0490 5.2146 23 16 2.2151 -4.9273 3.7315 24 8 1.2895 -5.9623 3.4292 25 8 3.5896 -5.2477 3.8964 26 1 -0.4849 0.8401 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5570 0.8897 29 1 2.7691 -3.3708 -2.0055 30 1 3.6524 -4.6363 -1.1187 31 1 0.6436 -5.0500 -1.4910 32 1 3.1952 -6.8722 -1.5642 33 1 1.4461 -7.4518 -1.6416 34 1 1.0907 -6.0983 -3.7572 35 1 2.8396 -5.5183 -3.6803 36 1 3.8793 -2.6699 3.1305 37 1 2.8162 -1.6350 2.1504 38 1 2.6571 -0.8584 4.4229 39 1 1.1438 -1.7149 4.0563 40 1 3.5213 -3.0220 5.4316 41 1 2.1675 -2.2719 6.3088 42 1 0.5871 -3.7942 5.1024 43 1 1.7726 -4.6857 6.0894 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329656254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:41 Heat of formation + Delta-G solvation = -108.010488 kcal Electronic energy + Delta-G solvation = -26156.917715 eV Core-core repulsion = 22522.236644 eV Total energy + Delta-G solvation = -3634.681071 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.19428 -38.53336 -38.19716 -37.53598 -37.02990 -36.49448 -34.46464 -33.01410 -29.74852 -29.23627 -27.50345 -25.01582 -24.79654 -23.24434 -21.93172 -21.88739 -20.54140 -19.70240 -18.53044 -18.46888 -18.05736 -17.31530 -16.95880 -16.68477 -16.34480 -16.26736 -15.81953 -15.39185 -15.06158 -14.84663 -14.68014 -14.36119 -14.15693 -13.87825 -13.62335 -13.31174 -13.18453 -13.09834 -12.93437 -12.77879 -12.66038 -12.63119 -12.51944 -12.38582 -12.28531 -11.99100 -11.78671 -11.74829 -11.54887 -11.37523 -11.17550 -10.92440 -10.71382 -10.54471 -9.59073 -8.19362 -6.31479 -1.03629 1.42715 1.43895 1.48307 1.53687 1.70539 2.02946 2.41578 2.73681 2.90506 2.98374 3.11450 3.40310 3.63061 3.74453 3.78470 3.81289 3.95530 4.00954 4.08597 4.13209 4.34755 4.38101 4.56014 4.61481 4.68576 4.72214 4.76388 4.85949 4.91282 4.97304 5.04389 5.17892 5.20024 5.21556 5.24346 5.39036 5.40268 5.60363 5.76047 6.04745 6.41735 6.75355 7.06214 7.38238 8.86428 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.007662 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.251119 B = 3653.706161 C = 6076.088074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.033 3.967 3 Si 0.947 3.053 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.054 0.946 9 C 0.247 3.753 10 N -0.582 5.582 11 C 0.144 3.856 12 C -0.189 4.189 13 C -0.181 4.181 14 C -0.147 4.147 15 C 0.531 3.469 16 O -0.586 6.586 17 C -0.589 4.589 18 H 0.165 0.835 19 C -0.108 4.108 20 C -0.134 4.134 21 C -0.112 4.112 22 C -0.572 4.572 23 S 2.419 3.581 24 O -0.984 6.984 25 O -0.958 6.958 26 H 0.268 0.732 27 H 0.023 0.977 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.126 0.874 42 H 0.164 0.836 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.343 -2.988 7.340 7.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.169 4.169 3 Si 0.773 3.227 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.072 0.928 9 C 0.127 3.873 10 N -0.310 5.310 11 C 0.021 3.979 12 C -0.208 4.208 13 C -0.218 4.218 14 C -0.184 4.184 15 C 0.318 3.682 16 O -0.469 6.469 17 C -0.698 4.698 18 H 0.182 0.818 19 C -0.147 4.147 20 C -0.172 4.172 21 C -0.150 4.150 22 C -0.706 4.706 23 S 2.603 3.397 24 O -0.981 6.981 25 O -0.955 6.955 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.144 0.856 42 H 0.182 0.818 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.900 -4.183 7.160 8.341 hybrid contribution -0.121 1.581 -0.497 1.662 sum 0.779 -2.602 6.663 7.195 Atomic orbital electron populations 1.69987 1.07048 1.28241 1.49958 1.25490 0.95394 1.01661 0.94317 0.85773 0.78539 0.79369 0.79042 1.20598 1.20923 1.18783 1.21452 0.93139 0.90983 1.52060 0.92776 1.19272 0.87580 0.82602 0.97868 1.48093 1.44446 1.33711 1.04777 1.21025 0.96410 0.95736 0.84753 1.22662 0.99853 0.95074 1.03251 1.23047 1.02271 0.93678 1.02794 1.23014 1.04232 1.01713 0.89480 1.19674 0.81662 0.81133 0.85682 1.90732 1.33610 1.34782 1.87768 1.30551 1.11341 1.18045 1.09899 0.81798 1.21484 0.97942 0.94187 1.01083 1.21710 1.03099 1.00700 0.91659 1.21467 1.00074 0.92083 1.01377 1.30100 1.12903 1.10818 1.16743 1.08091 0.74964 0.76849 0.79771 1.93491 1.65776 1.53982 1.84813 1.93495 1.34007 1.82554 1.85428 0.92250 0.95873 0.94337 0.89803 0.90949 0.88697 0.89434 0.88354 0.86939 0.87569 0.90840 0.88280 0.88115 0.89505 0.89863 0.85615 0.81780 0.81603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.52 13.29 21.45 0.28 -46.23 16 2 C 0.03 1.58 5.46 84.66 0.46 2.05 16 3 Si 0.95 38.75 29.54 68.60 2.03 40.78 16 4 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.54 -25.84 7.14 25.60 0.18 -25.66 16 8 H 0.05 2.67 7.70 -2.91 -0.02 2.65 16 9 C 0.25 11.23 4.99 85.63 0.43 11.66 16 10 N -0.58 -24.89 2.46 -826.18 -2.03 -26.92 16 11 C 0.14 5.52 5.78 86.38 0.50 6.02 16 12 C -0.19 -6.38 6.01 -10.79 -0.06 -6.45 16 13 C -0.18 -5.45 10.18 30.59 0.31 -5.14 16 14 C -0.15 -3.80 10.25 30.60 0.31 -3.48 16 15 C 0.53 23.15 6.78 87.65 0.59 23.74 16 16 O -0.59 -28.55 14.98 11.48 0.17 -28.38 16 17 C -0.59 -20.89 2.09 29.86 0.06 -20.83 16 18 H 0.16 5.36 6.13 -2.39 -0.01 5.35 16 19 C -0.11 -3.46 4.97 30.47 0.15 -3.31 16 20 C -0.13 -2.96 5.63 30.32 0.17 -2.79 16 21 C -0.11 -1.89 5.73 30.47 0.17 -1.71 16 22 C -0.57 -10.32 6.35 71.99 0.46 -9.86 16 23 S 2.42 79.43 4.33 -56.49 -0.24 79.18 16 24 O -0.98 -38.64 18.10 -127.40 -2.31 -40.95 16 25 O -0.96 -38.16 17.04 -121.15 -2.06 -40.23 16 26 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 27 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 28 H 0.04 1.75 5.79 -2.39 -0.01 1.74 16 29 H 0.08 3.14 8.11 -2.39 -0.02 3.12 16 30 H 0.07 2.86 6.96 -2.39 -0.02 2.84 16 31 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 32 H 0.09 2.77 8.03 -2.39 -0.02 2.75 16 33 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.07 2.36 8.01 -2.39 -0.02 2.34 16 37 H 0.10 3.72 5.47 -2.39 -0.01 3.71 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 40 H 0.08 1.48 8.01 -2.39 -0.02 1.46 16 41 H 0.13 1.28 8.14 -2.39 -0.02 1.27 16 42 H 0.16 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.17 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -70.87 356.23 0.58 -70.29 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 1.00 Total: 28.21 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 3.74 Total: -35.76 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.74 Total: -73.15 kcal Atomic # 8 Polarization: -105.35 SS G_CDS: -4.20 Total: -109.55 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 16 Polarization: 79.43 SS G_CDS: -0.24 Total: 79.18 kcal Total: -70.87 0.58 -70.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329656254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.719 kcal (2) G-P(sol) polarization free energy of solvation -70.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds