Wall clock time and date at job start Tue Mar 31 2020 11:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00069 * 2 1 4 4 H 1.48498 * 109.47107 * 240.00361 * 3 2 1 5 5 H 1.48503 * 109.47073 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47041 * 120.00338 * 3 2 1 7 7 C 1.37880 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99540 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00074 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.49996 * 59.93537 * 9 7 2 11 11 C 1.53042 * 109.52442 * 299.85281 * 9 7 2 12 12 C 1.53039 * 109.54031 * 178.67006 * 11 9 7 13 13 C 1.52760 * 109.38459 * 61.24177 * 12 11 9 14 14 N 1.46931 * 109.00543 * 305.58756 * 13 12 11 15 15 C 1.34777 * 120.63086 * 233.58109 * 14 13 12 16 16 O 1.21283 * 119.99750 * 179.72075 * 15 14 13 17 17 C 1.50702 * 119.99928 * 0.02562 * 15 14 13 18 18 H 1.09003 * 109.55049 * 39.52809 * 17 15 14 19 19 C 1.53035 * 109.54716 * 279.24095 * 17 15 14 20 20 C 1.52581 * 109.98771 * 176.49991 * 19 17 15 21 21 C 1.52588 * 110.64685 * 69.97887 * 20 19 17 22 22 C 1.53039 * 109.98677 * 290.02024 * 21 20 19 23 23 S 1.81662 * 108.99996 * 63.64537 * 22 21 20 24 24 O 1.42096 * 108.66341 * 191.37153 * 23 22 21 25 25 O 1.42105 * 108.75091 * 60.06071 * 23 22 21 26 26 C 1.46925 * 118.73924 * 53.31068 * 14 13 12 27 27 H 0.96999 * 120.00066 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46134 * 298.69308 * 11 9 7 29 29 H 1.09001 * 109.46045 * 58.65824 * 11 9 7 30 30 H 1.09004 * 109.49958 * 181.31755 * 12 11 9 31 31 H 1.09000 * 109.49401 * 301.38285 * 12 11 9 32 32 H 1.08997 * 109.51122 * 185.71191 * 13 12 11 33 33 H 1.09000 * 109.43557 * 65.42042 * 13 12 11 34 34 H 1.09007 * 109.38444 * 296.65085 * 19 17 15 35 35 H 1.08996 * 109.39061 * 56.33545 * 19 17 15 36 36 H 1.09008 * 109.24077 * 309.68150 * 20 19 17 37 37 H 1.08993 * 109.21659 * 190.26595 * 20 19 17 38 38 H 1.09003 * 109.38707 * 169.86136 * 21 20 19 39 39 H 1.08997 * 109.38127 * 50.17595 * 21 20 19 40 40 H 1.08997 * 109.55063 * 303.78689 * 22 21 20 41 41 H 1.09004 * 109.54422 * 183.50235 * 22 21 20 42 42 H 1.09005 * 109.58470 * 66.42378 * 26 14 13 43 43 H 1.08991 * 109.58721 * 186.85194 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6230 -2.5567 -0.8895 11 6 0.3740 -2.5834 1.2508 12 6 -0.4165 -3.8937 1.2346 13 6 0.5554 -5.0722 1.2448 14 7 1.5000 -4.9231 0.1294 15 6 1.6749 -5.9203 -0.7604 16 8 2.4540 -5.7829 -1.6797 17 6 0.8974 -7.2032 -0.6168 18 1 -0.1230 -6.9785 -0.3061 19 6 1.5691 -8.0946 0.4302 20 6 0.7424 -9.3586 0.6467 21 6 0.8174 -10.2667 -0.5772 22 6 0.0558 -9.6351 -1.7447 23 16 0.8693 -8.0784 -2.2085 24 8 0.0208 -7.3705 -3.1018 25 8 2.2072 -8.3600 -2.5962 26 6 2.2460 -3.6640 -0.0012 27 1 -0.4850 0.8400 0.0004 28 1 1.0047 -2.5506 2.1393 29 1 -0.3186 -1.7418 1.2661 30 1 -1.0583 -3.9423 2.1143 31 1 -1.0292 -3.9378 0.3343 32 1 -0.0001 -6.0031 1.1312 33 1 1.1022 -5.0833 2.1877 34 1 2.5662 -8.3690 0.0857 35 1 1.6503 -7.5498 1.3708 36 1 -0.2967 -9.0820 0.8256 37 1 1.1261 -9.8938 1.5152 38 1 0.3753 -11.2339 -0.3378 39 1 1.8607 -10.4076 -0.8597 40 1 -0.9721 -9.4337 -1.4433 41 1 0.0611 -10.3170 -2.5951 42 1 2.9333 -3.5579 0.8381 43 1 2.8055 -3.6661 -0.9365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397868336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:53 Heat of formation + Delta-G solvation = -142.367498 kcal Electronic energy + Delta-G solvation = -25855.861649 eV Core-core repulsion = 22219.690747 eV Total energy + Delta-G solvation = -3636.170903 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45848 -38.68179 -38.29931 -37.58073 -37.03296 -35.45306 -33.51553 -32.84114 -31.79860 -29.10871 -27.05990 -26.27071 -24.76038 -23.42835 -21.94451 -21.84768 -20.20401 -19.69135 -18.77953 -18.21557 -18.01953 -17.30240 -16.80241 -16.61167 -16.38696 -16.28407 -15.48747 -15.20275 -15.02342 -14.84275 -14.62766 -14.55190 -14.25245 -13.99907 -13.68681 -13.59484 -13.21050 -13.10959 -12.88296 -12.83040 -12.76782 -12.64254 -12.57229 -12.32387 -11.95133 -11.87264 -11.74843 -11.67459 -11.57466 -11.35852 -11.14599 -10.90392 -10.76901 -10.45557 -9.63526 -8.13509 -6.28928 -1.08602 1.33830 1.39583 1.41662 1.48855 1.68982 1.84242 2.40980 2.75031 2.93779 3.13226 3.24775 3.54230 3.70067 3.80744 3.83163 4.06885 4.08948 4.21619 4.29048 4.30455 4.49229 4.55083 4.58397 4.71974 4.76038 4.81769 4.88085 4.92833 4.98546 5.07820 5.17310 5.21211 5.24703 5.39856 5.41382 5.50163 5.58468 5.89704 6.10306 6.30511 6.33340 6.78852 6.92976 7.39259 8.90257 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.026134 B = 0.003685 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.155634 B = 7597.564135 C = 7965.512911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.052 0.948 9 C 0.038 3.962 10 H -0.017 1.017 11 C -0.106 4.106 12 C -0.133 4.133 13 C 0.102 3.898 14 N -0.591 5.591 15 C 0.521 3.479 16 O -0.592 6.592 17 C -0.594 4.594 18 H 0.192 0.808 19 C -0.102 4.102 20 C -0.133 4.133 21 C -0.119 4.119 22 C -0.565 4.565 23 S 2.406 3.594 24 O -0.993 6.993 25 O -0.967 6.967 26 C 0.125 3.875 27 H 0.262 0.738 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.043 0.957 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.174 0.826 41 H 0.156 0.844 42 H 0.071 0.929 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.968 -24.445 8.468 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.070 0.930 9 C 0.019 3.981 10 H 0.001 0.999 11 C -0.144 4.144 12 C -0.170 4.170 13 C -0.019 4.019 14 N -0.321 5.321 15 C 0.309 3.691 16 O -0.474 6.474 17 C -0.704 4.704 18 H 0.209 0.791 19 C -0.140 4.140 20 C -0.170 4.170 21 C -0.158 4.158 22 C -0.699 4.699 23 S 2.591 3.409 24 O -0.990 6.990 25 O -0.964 6.964 26 C 0.003 3.997 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.141 0.859 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.144 0.856 39 H 0.094 0.906 40 H 0.191 0.809 41 H 0.174 0.826 42 H 0.090 0.910 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.382 -23.901 7.183 25.339 hybrid contribution 0.325 1.701 -0.104 1.734 sum -4.057 -22.201 7.079 23.653 Atomic orbital electron populations 1.69999 1.07082 1.27352 1.50668 1.25687 0.95716 1.02275 0.94445 0.85649 0.78446 0.78974 0.78812 1.20422 1.20634 1.19032 1.21400 0.93089 0.91894 1.51629 0.92962 1.18908 0.93201 0.91562 0.94399 0.99910 1.21427 0.98775 0.97303 0.96932 1.21902 0.97969 0.94912 1.02264 1.22156 0.90779 1.00182 0.88809 1.48250 1.41840 1.14198 1.27842 1.20084 0.82341 0.85032 0.81654 1.90815 1.40087 1.82112 1.34404 1.30660 1.10533 1.04282 1.24934 0.79060 1.21515 0.99461 0.95663 0.97376 1.21798 1.02594 0.93199 0.99448 1.21532 1.00824 1.01827 0.91573 1.30093 1.13773 1.15287 1.10760 1.08419 0.75564 0.79965 0.76907 1.93516 1.69509 1.74221 1.61734 1.93504 1.37410 1.84948 1.80503 1.21685 0.94743 0.82540 1.00769 0.92859 0.93916 0.91893 0.88305 0.93852 0.85858 0.88798 0.90865 0.87450 0.87411 0.86639 0.85554 0.90578 0.80854 0.82586 0.91034 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.75 11.32 21.45 0.24 -52.51 16 2 C 0.02 1.02 5.30 84.65 0.45 1.46 16 3 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.54 -30.60 8.56 25.60 0.22 -30.38 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.04 1.98 2.25 -11.46 -0.03 1.96 16 10 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 11 C -0.11 -4.68 4.96 30.62 0.15 -4.53 16 12 C -0.13 -4.21 6.06 30.53 0.19 -4.02 16 13 C 0.10 2.55 5.62 86.22 0.48 3.04 16 14 N -0.59 -21.32 2.98 -819.72 -2.44 -23.77 16 15 C 0.52 19.22 6.88 87.66 0.60 19.83 16 16 O -0.59 -28.53 14.83 11.24 0.17 -28.36 16 17 C -0.59 -13.34 1.94 29.86 0.06 -13.28 16 18 H 0.19 2.65 6.52 -2.39 -0.02 2.64 16 19 C -0.10 -1.40 4.79 30.47 0.15 -1.25 16 20 C -0.13 -0.56 5.63 30.32 0.17 -0.39 16 21 C -0.12 -0.69 5.73 30.47 0.17 -0.51 16 22 C -0.56 -5.30 6.35 72.00 0.46 -4.84 16 23 S 2.41 63.59 4.24 -56.49 -0.24 63.35 16 24 O -0.99 -36.08 18.10 -127.38 -2.31 -38.39 16 25 O -0.97 -34.48 17.12 -121.20 -2.07 -36.55 16 26 C 0.12 5.64 5.66 86.36 0.49 6.13 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.06 3.22 6.05 -2.39 -0.01 3.20 16 30 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.12 1.87 5.20 -2.39 -0.01 1.86 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 1.30 8.02 -2.38 -0.02 1.28 16 35 H 0.11 1.19 7.27 -2.39 -0.02 1.17 16 36 H 0.11 -0.08 8.09 -2.38 -0.02 -0.10 16 37 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.08 0.67 8.02 -2.39 -0.02 0.65 16 40 H 0.17 0.42 8.14 -2.39 -0.02 0.41 16 41 H 0.16 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 43 H 0.05 2.54 7.00 -2.39 -0.02 2.52 16 Total: -1.00 -91.13 342.84 -0.06 -91.20 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.00 Total: 5.56 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 3.56 Total: -26.80 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -2.20 Total: -76.28 kcal Atomic # 8 Polarization: -99.09 SS G_CDS: -4.21 Total: -103.30 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 63.59 SS G_CDS: -0.24 Total: 63.35 kcal Total: -91.13 -0.06 -91.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397868336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.172 kcal (2) G-P(sol) polarization free energy of solvation -91.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds