Wall clock time and date at job start Tue Mar 31 2020 11:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.46955 * 179.97438 * 9 7 2 11 11 O 1.42098 * 110.54236 * 291.62958 * 10 9 7 12 12 O 1.42107 * 110.54259 * 68.37142 * 10 9 7 13 13 N 1.65591 * 104.45009 * 179.97438 * 10 9 7 14 14 C 1.47426 * 125.64708 * 90.02757 * 13 10 9 15 15 C 1.54914 * 104.83480 * 155.83286 * 14 13 10 16 16 C 1.55153 * 101.58018 * 37.00887 * 15 14 13 17 17 C 1.47019 * 125.65374 * 269.71342 * 13 10 9 18 18 H 1.09000 * 109.88262 * 300.51927 * 17 13 10 19 19 C 1.53002 * 109.87784 * 61.68038 * 17 13 10 20 20 H 1.09007 * 109.62442 * 305.00218 * 19 17 13 21 21 C 1.53233 * 109.62655 * 184.62130 * 19 17 13 22 22 C 1.52964 * 109.40151 * 185.65808 * 21 19 17 23 23 C 1.52953 * 109.81848 * 63.60226 * 22 21 19 24 24 C 1.53231 * 109.40390 * 296.39744 * 23 22 21 25 25 C 1.51270 * 109.62842 * 65.38305 * 19 17 13 26 26 O 1.20765 * 120.84676 * 351.04033 * 25 19 17 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 29 29 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 30 30 H 1.09006 * 110.36724 * 274.67625 * 14 13 10 31 31 H 1.09001 * 110.36782 * 36.99741 * 14 13 10 32 32 H 1.08994 * 111.00295 * 155.07977 * 15 14 13 33 33 H 1.09000 * 111.00312 * 278.89666 * 15 14 13 34 34 H 1.09006 * 110.72005 * 82.85694 * 16 15 14 35 35 H 1.08999 * 110.72346 * 206.13733 * 16 15 14 36 36 H 1.08999 * 109.47948 * 305.63570 * 21 19 17 37 37 H 1.08995 * 109.47794 * 65.68204 * 21 19 17 38 38 H 1.09002 * 109.40700 * 183.70385 * 22 21 19 39 39 H 1.09003 * 109.41412 * 303.48691 * 22 21 19 40 40 H 1.09003 * 109.48317 * 56.37490 * 23 22 21 41 41 H 1.08997 * 109.48183 * 176.40407 * 23 22 21 42 42 H 1.09000 * 109.63232 * 174.34366 * 24 23 22 43 43 H 1.08999 * 109.62642 * 294.72653 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 16 2.4298 -3.8779 -0.0029 11 8 3.1266 -3.9371 -1.2399 12 8 3.1266 -3.9393 1.2340 13 7 1.4795 -5.2340 -0.0034 14 6 0.9864 -5.9372 -1.2017 15 6 0.7187 -7.3877 -0.7283 16 6 0.1709 -7.1517 0.7040 17 6 0.9930 -5.9399 1.1909 18 1 1.8375 -6.2794 1.7906 19 6 0.1036 -5.0100 2.0187 20 1 0.6481 -4.0952 2.2527 21 6 -0.3063 -5.7116 3.3178 22 6 -1.3065 -4.8359 4.0745 23 6 -2.5843 -4.6763 3.2490 24 6 -2.2602 -3.9358 1.9473 25 6 -1.1456 -4.6715 1.2355 26 8 -1.2518 -4.9839 0.0738 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5575 0.8880 29 1 0.6247 -2.5562 -0.8920 30 1 0.0643 -5.4782 -1.5584 31 1 1.7438 -5.9278 -1.9856 32 1 -0.0280 -7.8724 -1.3572 33 1 1.6415 -7.9673 -0.7037 34 1 -0.8927 -6.9146 0.6760 35 1 0.3570 -8.0201 1.3361 36 1 -0.7677 -6.6708 3.0830 37 1 0.5759 -5.8741 3.9371 38 1 -1.5479 -5.3037 5.0290 39 1 -0.8661 -3.8551 4.2540 40 1 -2.9917 -5.6601 3.0158 41 1 -3.3167 -4.1054 3.8196 42 1 -3.1452 -3.9081 1.3116 43 1 -1.9406 -2.9187 2.1745 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408460357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:40 Heat of formation + Delta-G solvation = -123.381609 kcal Electronic energy + Delta-G solvation = -26793.380685 eV Core-core repulsion = 23158.033073 eV Total energy + Delta-G solvation = -3635.347613 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -40.49777 -37.43792 -36.31588 -36.08150 -34.96556 -33.36014 -31.97075 -30.60361 -29.20210 -28.98356 -26.86086 -23.56824 -23.23623 -22.01600 -21.24451 -21.00011 -18.84314 -17.97262 -17.19403 -16.55883 -16.05361 -15.61622 -15.40171 -15.24799 -14.77745 -14.50566 -14.23823 -14.13125 -13.74364 -13.36478 -13.05809 -12.88058 -12.52000 -12.43758 -12.34552 -12.04742 -12.01900 -11.53992 -11.43841 -11.26296 -11.17505 -11.11964 -10.98316 -10.92864 -10.85461 -10.72885 -10.68255 -10.59926 -10.45164 -10.34293 -9.82320 -9.33528 -8.96551 -8.72083 -8.29899 -6.34099 -4.44851 1.31130 2.27968 3.19868 3.25344 3.31109 3.54900 4.20700 4.22851 4.59619 4.71151 4.75343 4.78622 4.86784 4.89690 5.01087 5.10211 5.15261 5.27515 5.37849 5.38825 5.45592 5.58358 5.65145 5.77226 5.85016 5.87262 5.90718 5.95126 6.02174 6.04561 6.08979 6.16168 6.23099 6.29258 6.34784 6.50801 6.61083 6.61524 6.83573 7.02119 7.43294 7.73805 7.85214 8.56814 9.22626 10.77229 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.006491 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.413217 B = 4312.834414 C = 5498.945483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.078 3.922 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.535 4.535 8 H 0.068 0.932 9 C -0.417 4.417 10 S 2.592 3.408 11 O -0.977 6.977 12 O -0.978 6.978 13 N -1.011 6.011 14 C 0.123 3.877 15 C -0.122 4.122 16 C -0.124 4.124 17 C 0.170 3.830 18 H 0.082 0.918 19 C -0.167 4.167 20 H 0.110 0.890 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.111 4.111 24 C -0.173 4.173 25 C 0.370 3.630 26 O -0.435 6.435 27 H 0.268 0.732 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 -13.023 6.600 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.128 4.128 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.086 0.914 9 C -0.553 4.553 10 S 2.694 3.306 11 O -0.968 6.968 12 O -0.969 6.969 13 N -0.846 5.846 14 C -0.003 4.003 15 C -0.161 4.161 16 C -0.162 4.162 17 C 0.063 3.937 18 H 0.100 0.900 19 C -0.188 4.188 20 H 0.128 0.872 21 C -0.141 4.141 22 C -0.165 4.165 23 C -0.148 4.148 24 C -0.210 4.210 25 C 0.244 3.756 26 O -0.307 6.307 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.688 -13.060 5.953 15.439 hybrid contribution -0.288 1.347 0.092 1.381 sum -5.975 -11.713 6.045 14.472 Atomic orbital electron populations 1.69955 1.06183 1.27568 1.47506 1.24905 0.95006 0.99480 0.93432 0.86404 0.80066 0.81877 0.78821 1.19877 1.20596 1.19093 1.20325 0.92686 0.88775 1.55603 0.91384 1.27824 1.10458 1.10625 1.06379 1.05669 0.76388 0.74872 0.73693 1.93460 1.71417 1.86282 1.45628 1.93458 1.71528 1.86356 1.45549 1.58842 1.69500 1.44459 1.11769 1.21947 0.99576 0.91444 0.87301 1.22634 1.00668 0.96562 0.96217 1.22767 1.00600 0.96302 0.96552 1.21030 0.95179 0.91262 0.86218 0.89980 1.22622 0.96961 1.01967 0.97217 0.87232 1.21492 0.99821 0.98558 0.94209 1.21607 0.95403 1.01063 0.98410 1.21495 0.97919 1.00416 0.94996 1.22346 0.98978 1.01635 0.98079 1.24554 0.88165 0.75034 0.87841 1.90338 1.80028 1.42960 1.17418 0.92280 0.90430 0.89714 0.90458 0.91025 0.90693 0.91392 0.90035 0.91220 0.91241 0.90435 0.91263 0.90922 0.91823 0.91031 0.89568 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.51 13.29 55.43 0.74 -23.78 16 2 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -14.98 9.13 -34.44 -0.31 -15.29 16 8 H 0.07 1.89 7.71 -52.49 -0.40 1.48 16 9 C -0.42 -10.44 5.91 36.01 0.21 -10.23 16 10 S 2.59 59.36 5.02 -107.50 -0.54 58.82 16 11 O -0.98 -24.78 17.28 -57.54 -0.99 -25.78 16 12 O -0.98 -23.68 17.45 -57.54 -1.00 -24.68 16 13 N -1.01 -18.62 2.80 -104.42 -0.29 -18.91 16 14 C 0.12 2.01 6.33 -2.53 -0.02 2.00 16 15 C -0.12 -1.54 7.08 -24.58 -0.17 -1.72 16 16 C -0.12 -1.52 4.95 -24.90 -0.12 -1.64 16 17 C 0.17 2.58 2.48 -66.96 -0.17 2.41 16 18 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.17 -2.43 2.10 -91.37 -0.19 -2.62 16 20 H 0.11 1.83 6.42 -51.93 -0.33 1.50 16 21 C -0.10 -1.08 5.15 -26.63 -0.14 -1.22 16 22 C -0.13 -1.23 5.81 -26.77 -0.16 -1.38 16 23 C -0.11 -1.08 5.94 -26.64 -0.16 -1.24 16 24 C -0.17 -2.25 6.16 -27.45 -0.17 -2.42 16 25 C 0.37 5.64 5.19 -28.44 -0.15 5.49 16 26 O -0.44 -7.51 12.04 5.99 0.07 -7.44 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.08 1.88 6.22 -51.92 -0.32 1.56 16 29 H 0.08 2.20 8.14 -51.92 -0.42 1.77 16 30 H 0.08 1.32 6.40 -51.93 -0.33 0.99 16 31 H 0.07 1.19 7.67 -51.93 -0.40 0.80 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.03 5.57 -51.93 -0.29 0.74 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.63 7.32 -51.93 -0.38 0.25 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -33.28 343.74 -10.17 -43.45 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.67 Total: 2.94 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -1.64 Total: -25.81 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.44 Total: -42.69 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -1.93 Total: -57.89 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 59.36 SS G_CDS: -0.54 Total: 58.82 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.28 -10.17 -43.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.930 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds