Wall clock time and date at job start Tue Mar 31 2020 11:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.46955 * 179.97438 * 9 7 2 11 11 O 1.42098 * 110.54236 * 291.62958 * 10 9 7 12 12 O 1.42107 * 110.54259 * 68.37142 * 10 9 7 13 13 N 1.65591 * 104.45009 * 179.97438 * 10 9 7 14 14 C 1.47426 * 125.64708 * 90.02757 * 13 10 9 15 15 C 1.54914 * 104.83480 * 155.83286 * 14 13 10 16 16 C 1.55153 * 101.58018 * 37.00887 * 15 14 13 17 17 C 1.47019 * 125.65374 * 269.71342 * 13 10 9 18 18 H 1.09000 * 109.88262 * 300.51927 * 17 13 10 19 19 C 1.53002 * 109.87784 * 61.68038 * 17 13 10 20 20 H 1.09007 * 109.62442 * 305.00218 * 19 17 13 21 21 C 1.53233 * 109.62655 * 184.62130 * 19 17 13 22 22 C 1.52964 * 109.40151 * 185.65808 * 21 19 17 23 23 C 1.52953 * 109.81848 * 63.60226 * 22 21 19 24 24 C 1.53231 * 109.40390 * 296.39744 * 23 22 21 25 25 C 1.51270 * 109.62842 * 65.38305 * 19 17 13 26 26 O 1.20765 * 120.84676 * 351.04033 * 25 19 17 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 29 29 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 30 30 H 1.09006 * 110.36724 * 274.67625 * 14 13 10 31 31 H 1.09001 * 110.36782 * 36.99741 * 14 13 10 32 32 H 1.08994 * 111.00295 * 155.07977 * 15 14 13 33 33 H 1.09000 * 111.00312 * 278.89666 * 15 14 13 34 34 H 1.09006 * 110.72005 * 82.85694 * 16 15 14 35 35 H 1.08999 * 110.72346 * 206.13733 * 16 15 14 36 36 H 1.08999 * 109.47948 * 305.63570 * 21 19 17 37 37 H 1.08995 * 109.47794 * 65.68204 * 21 19 17 38 38 H 1.09002 * 109.40700 * 183.70385 * 22 21 19 39 39 H 1.09003 * 109.41412 * 303.48691 * 22 21 19 40 40 H 1.09003 * 109.48317 * 56.37490 * 23 22 21 41 41 H 1.08997 * 109.48183 * 176.40407 * 23 22 21 42 42 H 1.09000 * 109.63232 * 174.34366 * 24 23 22 43 43 H 1.08999 * 109.62642 * 294.72653 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 16 2.4298 -3.8779 -0.0029 11 8 3.1266 -3.9371 -1.2399 12 8 3.1266 -3.9393 1.2340 13 7 1.4795 -5.2340 -0.0034 14 6 0.9864 -5.9372 -1.2017 15 6 0.7187 -7.3877 -0.7283 16 6 0.1709 -7.1517 0.7040 17 6 0.9930 -5.9399 1.1909 18 1 1.8375 -6.2794 1.7906 19 6 0.1036 -5.0100 2.0187 20 1 0.6481 -4.0952 2.2527 21 6 -0.3063 -5.7116 3.3178 22 6 -1.3065 -4.8359 4.0745 23 6 -2.5843 -4.6763 3.2490 24 6 -2.2602 -3.9358 1.9473 25 6 -1.1456 -4.6715 1.2355 26 8 -1.2518 -4.9839 0.0738 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5575 0.8880 29 1 0.6247 -2.5562 -0.8920 30 1 0.0643 -5.4782 -1.5584 31 1 1.7438 -5.9278 -1.9856 32 1 -0.0280 -7.8724 -1.3572 33 1 1.6415 -7.9673 -0.7037 34 1 -0.8927 -6.9146 0.6760 35 1 0.3570 -8.0201 1.3361 36 1 -0.7677 -6.6708 3.0830 37 1 0.5759 -5.8741 3.9371 38 1 -1.5479 -5.3037 5.0290 39 1 -0.8661 -3.8551 4.2540 40 1 -2.9917 -5.6601 3.0158 41 1 -3.3167 -4.1054 3.8196 42 1 -3.1452 -3.9081 1.3116 43 1 -1.9406 -2.9187 2.1745 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408460357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:38 Heat of formation + Delta-G solvation = -145.700221 kcal Electronic energy + Delta-G solvation = -26794.348493 eV Core-core repulsion = 23158.033073 eV Total energy + Delta-G solvation = -3636.315420 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.65909 -38.67500 -38.10240 -37.24376 -36.92902 -35.47004 -33.03977 -31.87652 -31.10085 -30.16838 -27.96980 -25.64495 -24.29826 -23.14615 -22.35011 -22.11155 -20.06018 -19.57213 -19.02578 -18.35220 -17.52906 -17.20687 -16.86779 -16.64582 -16.24889 -15.90158 -15.72910 -15.16917 -14.86214 -14.72278 -14.43039 -14.21718 -14.15711 -13.93877 -13.60868 -13.48709 -13.31076 -13.21652 -13.11795 -13.04100 -12.78595 -12.64902 -12.51868 -12.45774 -12.09993 -11.97794 -11.86613 -11.70364 -11.62027 -11.42089 -11.33349 -11.24114 -10.82670 -10.14063 -9.77058 -8.45294 -6.65311 -0.54129 1.07858 1.33574 1.35230 1.47132 1.87857 2.27390 2.86417 2.93811 3.07811 3.23389 3.55290 3.61946 3.84642 3.96625 4.01248 4.14005 4.20028 4.29294 4.32561 4.45340 4.53617 4.58162 4.65785 4.69081 4.78214 4.81462 4.98301 5.00012 5.00081 5.08503 5.10150 5.13387 5.16805 5.21389 5.25447 5.31056 5.35849 5.47969 5.51777 5.61734 5.64922 6.43426 6.65739 7.06535 8.66687 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.006491 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.413217 B = 4312.834414 C = 5498.945483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.030 3.970 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.571 4.571 8 H 0.061 0.939 9 C -0.422 4.422 10 S 2.620 3.380 11 O -1.005 7.005 12 O -0.992 6.992 13 N -1.009 6.009 14 C 0.111 3.889 15 C -0.112 4.112 16 C -0.113 4.113 17 C 0.156 3.844 18 H 0.089 0.911 19 C -0.172 4.172 20 H 0.079 0.921 21 C -0.098 4.098 22 C -0.127 4.127 23 C -0.103 4.103 24 C -0.174 4.174 25 C 0.364 3.636 26 O -0.461 6.461 27 H 0.274 0.726 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 -14.745 8.093 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.174 4.174 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.610 4.610 8 H 0.079 0.921 9 C -0.555 4.555 10 S 2.721 3.279 11 O -0.996 6.996 12 O -0.983 6.983 13 N -0.847 5.847 14 C -0.014 4.014 15 C -0.151 4.151 16 C -0.152 4.152 17 C 0.050 3.950 18 H 0.107 0.893 19 C -0.192 4.192 20 H 0.097 0.903 21 C -0.136 4.136 22 C -0.165 4.165 23 C -0.140 4.140 24 C -0.212 4.212 25 C 0.240 3.760 26 O -0.335 6.335 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.364 -14.763 7.461 17.724 hybrid contribution -0.129 1.845 -0.396 1.892 sum -6.493 -12.918 7.066 16.092 Atomic orbital electron populations 1.70033 1.07420 1.28847 1.47410 1.25813 0.95993 1.02964 0.92605 0.85483 0.79039 0.77686 0.79332 1.19062 1.18834 1.18632 1.20708 0.92830 0.90684 1.56778 0.92061 1.27821 1.10811 1.11753 1.05152 1.04439 0.75911 0.74880 0.72673 1.93413 1.72393 1.86885 1.46881 1.93422 1.72111 1.86771 1.46002 1.58502 1.69192 1.42856 1.14154 1.22171 0.98617 0.94009 0.86565 1.22649 1.02110 0.93663 0.96650 1.22778 0.99769 0.95925 0.96695 1.21471 0.96096 0.92301 0.85110 0.89277 1.22669 0.96185 1.01105 0.99255 0.90292 1.21563 1.00722 0.99223 0.92046 1.21638 0.94876 1.00377 0.99581 1.21512 0.98469 1.01028 0.93011 1.22375 0.98121 1.00733 0.99996 1.24964 0.88912 0.74521 0.87573 1.90325 1.80654 1.44263 1.18270 0.91664 0.90602 0.91810 0.91639 0.91909 0.88407 0.89966 0.90207 0.87430 0.88736 0.89441 0.88225 0.92634 0.89969 0.89455 0.89671 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.75 13.29 21.45 0.28 -51.47 16 2 C 0.03 1.70 5.46 84.66 0.46 2.17 16 3 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.57 -33.31 9.13 25.60 0.23 -33.08 16 8 H 0.06 3.54 7.71 -2.91 -0.02 3.52 16 9 C -0.42 -22.30 5.91 71.24 0.42 -21.88 16 10 S 2.62 124.46 5.02 -56.49 -0.28 124.18 16 11 O -1.00 -52.77 17.28 -127.65 -2.21 -54.97 16 12 O -0.99 -49.20 17.45 -127.65 -2.23 -51.43 16 13 N -1.01 -37.60 2.80 -484.27 -1.35 -38.96 16 14 C 0.11 3.65 6.33 86.86 0.55 4.20 16 15 C -0.11 -2.55 7.08 31.99 0.23 -2.32 16 16 C -0.11 -2.44 4.95 31.78 0.16 -2.28 16 17 C 0.16 4.54 2.48 45.34 0.11 4.66 16 18 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 19 C -0.17 -4.92 2.10 -11.28 -0.02 -4.95 16 20 H 0.08 2.76 6.42 -2.38 -0.02 2.75 16 21 C -0.10 -1.82 5.15 30.66 0.16 -1.66 16 22 C -0.13 -2.15 5.81 30.57 0.18 -1.97 16 23 C -0.10 -1.78 5.94 30.66 0.18 -1.60 16 24 C -0.17 -4.58 6.16 30.13 0.19 -4.40 16 25 C 0.36 11.18 5.19 29.48 0.15 11.33 16 26 O -0.46 -16.17 12.04 -1.47 -0.02 -16.18 16 27 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.08 3.94 6.22 -2.39 -0.01 3.92 16 29 H 0.06 3.55 8.14 -2.39 -0.02 3.53 16 30 H 0.07 2.30 6.40 -2.38 -0.02 2.28 16 31 H 0.06 2.14 7.67 -2.39 -0.02 2.12 16 32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.79 5.57 -2.38 -0.01 1.78 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.31 7.32 -2.39 -0.02 1.29 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -74.33 343.74 0.22 -74.11 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 1.00 Total: 21.08 kcal Atomic # 6 Polarization: -54.77 SS G_CDS: 3.00 Total: -51.77 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -1.07 Total: -90.42 kcal Atomic # 8 Polarization: -118.14 SS G_CDS: -4.45 Total: -122.59 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 124.46 SS G_CDS: -0.28 Total: 124.18 kcal Total: -74.33 0.22 -74.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.588 kcal (2) G-P(sol) polarization free energy of solvation -74.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds