Wall clock time and date at job start Tue Mar 31 2020 10:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99957 * 2 1 4 4 H 1.48498 * 109.47201 * 269.99850 * 3 2 1 5 5 H 1.48493 * 109.47192 * 30.00151 * 3 2 1 6 6 H 1.48506 * 109.47231 * 150.00162 * 3 2 1 7 7 C 1.37881 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99520 * 354.14750 * 7 2 1 9 9 C 1.50705 * 119.99861 * 174.41469 * 7 2 1 10 10 C 1.52992 * 115.55054 * 294.37128 * 9 7 2 11 11 N 1.46504 * 109.47077 * 295.00883 * 10 9 7 12 12 C 1.34779 * 120.00066 * 182.27396 * 11 10 9 13 13 O 1.21285 * 119.99618 * 5.07406 * 12 11 10 14 14 C 1.50696 * 120.00170 * 185.07892 * 12 11 10 15 15 S 1.81396 * 109.47296 * 184.83285 * 14 12 11 16 16 O 1.42101 * 108.57715 * 294.48431 * 15 14 12 17 17 O 1.42097 * 108.58131 * 65.50933 * 15 14 12 18 18 C 1.81395 * 101.92289 * 179.97438 * 15 14 12 19 19 C 1.54262 * 110.03389 * 302.90836 * 18 15 14 20 20 C 1.54963 * 104.15984 * 217.13544 * 19 18 15 21 21 C 1.54890 * 102.78081 * 37.88732 * 20 19 18 22 22 C 1.53881 * 110.03346 * 185.68605 * 18 15 14 23 23 C 1.53002 * 117.49580 * 148.69864 * 9 7 2 24 24 C 1.53001 * 117.49488 * 80.04091 * 9 7 2 25 25 H 0.97001 * 120.00238 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47687 * 55.01040 * 10 9 7 27 27 H 1.09000 * 109.47295 * 175.01009 * 10 9 7 28 28 H 0.96996 * 119.99896 * 2.27249 * 11 10 9 29 29 H 1.09001 * 109.47089 * 304.83207 * 14 12 11 30 30 H 1.08999 * 109.47605 * 64.82806 * 14 12 11 31 31 H 1.09001 * 110.01479 * 64.30054 * 18 15 14 32 32 H 1.09001 * 110.48658 * 335.78254 * 19 18 15 33 33 H 1.08999 * 110.48724 * 98.42662 * 19 18 15 34 34 H 1.09000 * 110.72351 * 279.57073 * 20 19 18 35 35 H 1.08996 * 110.92314 * 156.29429 * 20 19 18 36 36 H 1.08995 * 110.48986 * 203.40672 * 21 20 19 37 37 H 1.08993 * 110.59948 * 80.81473 * 21 20 19 38 38 H 1.08993 * 110.03093 * 238.57078 * 22 18 15 39 39 H 1.08995 * 110.02871 * 359.95367 * 22 18 15 40 40 H 1.09002 * 117.49975 * 0.02562 * 23 9 7 41 41 H 1.09000 * 117.49779 * 145.02193 * 23 9 7 42 42 H 1.09002 * 117.49486 * 214.97468 * 24 9 7 43 43 H 1.09003 * 117.49855 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4687 -2.1268 0.0963 9 6 3.5062 -1.1972 -0.1265 10 6 4.0565 -0.6914 -1.4614 11 7 3.6465 -1.6006 -2.5346 12 6 4.0568 -1.3789 -3.7991 13 8 4.8388 -0.4821 -4.0345 14 6 3.5439 -2.2451 -4.9205 15 16 4.3821 -1.7942 -6.4647 16 8 4.0073 -0.4685 -6.8129 17 8 5.7607 -2.1159 -6.3423 18 6 3.6251 -2.9396 -7.6502 19 6 3.8338 -4.3956 -7.1853 20 6 4.0733 -5.1823 -8.4988 21 6 4.9181 -4.1943 -9.3409 22 6 4.3138 -2.8115 -9.0204 23 6 4.2719 -2.3223 0.5727 24 6 4.3222 -0.8986 1.1328 25 1 -0.4850 0.8400 -0.0004 26 1 3.6655 0.3062 -1.6612 27 1 5.1448 -0.6523 -1.4143 28 1 3.0798 -2.3620 -2.3350 29 1 3.7431 -3.2919 -4.6913 30 1 2.4701 -2.0958 -5.0330 31 1 2.5603 -2.7273 -7.7463 32 1 4.7048 -4.4670 -6.5339 33 1 2.9438 -4.7646 -6.6756 34 1 3.1278 -5.4020 -8.9946 35 1 4.6294 -6.0999 -8.3070 36 1 4.8190 -4.4169 -10.4032 37 1 5.9650 -4.2320 -9.0401 38 1 3.5830 -2.5379 -9.7814 39 1 5.1022 -2.0604 -8.9731 40 1 3.6895 -3.0604 1.1241 41 1 5.1680 -2.7019 0.0818 42 1 5.2514 -0.3422 1.0101 43 1 3.7729 -0.6995 2.0530 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431098354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:29 Heat of formation + Delta-G solvation = -120.659468 kcal Electronic energy + Delta-G solvation = -24818.786049 eV Core-core repulsion = 21183.556477 eV Total energy + Delta-G solvation = -3635.229572 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97457 -38.96403 -38.79234 -38.03215 -37.08401 -35.23855 -34.29599 -31.95760 -30.07982 -29.71816 -28.37008 -26.87194 -23.30480 -22.36490 -21.86300 -21.51350 -21.04277 -19.76365 -18.89084 -18.59093 -17.80338 -17.44691 -17.30154 -17.01287 -16.55212 -16.23056 -16.10565 -15.47798 -15.24214 -14.95527 -14.72787 -14.42956 -14.34891 -14.03333 -13.73995 -13.56840 -13.17031 -13.10757 -13.05397 -12.81603 -12.71618 -12.26159 -12.17567 -12.13533 -12.09505 -12.04405 -11.93358 -11.63484 -11.48500 -11.39377 -11.14314 -11.00376 -10.74817 -10.40202 -10.09661 -8.34511 -6.37728 -1.16722 1.27862 1.31885 1.37164 1.44753 1.69525 1.94676 2.31465 2.73721 2.91529 2.97167 3.28124 3.32281 3.46515 3.53579 3.88199 3.92820 3.97220 4.23707 4.24189 4.27469 4.35945 4.42725 4.42912 4.47283 4.51945 4.72909 4.74774 4.80003 4.90767 4.98979 5.04017 5.08387 5.18794 5.22543 5.23755 5.35587 5.45362 5.51202 5.65985 6.26787 6.37955 6.69990 7.02368 7.31473 8.79317 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022002 B = 0.003414 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.313809 B = 8198.776133 C = 8363.469562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.038 3.962 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.224 1.224 7 C -0.475 4.475 8 H 0.053 0.947 9 C -0.045 4.045 10 C 0.150 3.850 11 N -0.683 5.683 12 C 0.520 3.480 13 O -0.596 6.596 14 C -0.647 4.647 15 S 2.423 3.577 16 O -0.982 6.982 17 O -0.967 6.967 18 C -0.547 4.547 19 C -0.124 4.124 20 C -0.115 4.115 21 C -0.132 4.132 22 C -0.115 4.115 23 C -0.150 4.150 24 C -0.183 4.183 25 H 0.265 0.735 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.421 0.579 29 H 0.206 0.794 30 H 0.197 0.803 31 H 0.178 0.822 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.931 -14.186 -16.469 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.161 4.161 3 Si 0.731 3.269 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.146 1.146 7 C -0.512 4.512 8 H 0.071 0.929 9 C -0.047 4.047 10 C 0.025 3.975 11 N -0.333 5.333 12 C 0.306 3.694 13 O -0.479 6.479 14 C -0.776 4.776 15 S 2.609 3.391 16 O -0.979 6.979 17 O -0.964 6.964 18 C -0.661 4.661 19 C -0.162 4.162 20 C -0.153 4.153 21 C -0.169 4.169 22 C -0.154 4.154 23 C -0.187 4.187 24 C -0.222 4.222 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.259 0.741 29 H 0.223 0.777 30 H 0.215 0.785 31 H 0.196 0.804 32 H 0.098 0.902 33 H 0.141 0.859 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.953 -12.748 -16.663 22.103 hybrid contribution -0.868 0.771 0.528 1.275 sum 6.084 -11.977 -16.136 20.996 Atomic orbital electron populations 1.69978 1.07729 1.27819 1.51973 1.25490 0.94892 1.01696 0.94023 0.86421 0.81584 0.80754 0.78092 1.21758 1.22146 1.14616 1.20370 0.88618 0.93104 1.49113 0.92863 1.19443 0.92866 1.03183 0.89166 1.21063 0.97728 0.91944 0.86722 1.45672 1.51129 1.30466 1.06017 1.20006 0.80719 0.83971 0.84754 1.90801 1.37349 1.35475 1.84257 1.30789 1.18339 1.12859 1.15577 1.08035 0.76408 0.76591 0.78048 1.93504 1.84790 1.36952 1.82618 1.93494 1.31308 1.85568 1.86003 1.30738 1.14237 1.11265 1.09821 1.22604 1.04844 0.88696 1.00092 1.22502 1.01036 0.97833 0.93939 1.22489 0.99755 0.92865 1.01833 1.22087 0.99924 0.99748 0.93628 1.22875 1.01380 0.91050 1.03410 1.23091 1.01258 0.99601 0.98215 0.92603 0.94802 0.91775 0.74120 0.77674 0.78530 0.80439 0.90203 0.85919 0.89224 0.89624 0.89154 0.91750 0.87399 0.93134 0.89083 0.88106 0.89159 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.11 13.96 21.45 0.30 -54.81 16 2 C 0.04 2.09 5.47 84.66 0.46 2.56 16 3 Si 0.90 43.76 25.04 68.60 1.72 45.48 16 4 H -0.29 -14.70 6.90 99.48 0.69 -14.02 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.22 -9.79 5.78 99.48 0.57 -9.21 16 7 C -0.47 -24.06 9.17 25.60 0.23 -23.82 16 8 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 9 C -0.05 -1.88 0.84 -52.93 -0.04 -1.92 16 10 C 0.15 6.22 5.14 86.38 0.44 6.66 16 11 N -0.68 -24.62 5.47 -463.06 -2.53 -27.15 16 12 C 0.52 18.80 7.84 87.66 0.69 19.49 16 13 O -0.60 -27.51 15.64 0.08 0.00 -27.51 16 14 C -0.65 -14.16 5.94 71.23 0.42 -13.74 16 15 S 2.42 64.61 3.13 -56.49 -0.18 64.43 16 16 O -0.98 -36.24 17.85 -124.61 -2.22 -38.46 16 17 O -0.97 -32.73 17.66 -126.93 -2.24 -34.97 16 18 C -0.55 -7.38 3.38 31.32 0.11 -7.27 16 19 C -0.12 -1.12 5.49 31.69 0.17 -0.94 16 20 C -0.12 -0.91 6.91 31.91 0.22 -0.69 16 21 C -0.13 -1.50 6.83 31.67 0.22 -1.28 16 22 C -0.12 -1.68 6.48 31.32 0.20 -1.48 16 23 C -0.15 -5.07 9.96 30.62 0.30 -4.77 16 24 C -0.18 -6.84 8.04 30.62 0.25 -6.59 16 25 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 26 H 0.03 1.60 5.00 -2.39 -0.01 1.59 16 27 H 0.06 2.53 8.09 -2.39 -0.02 2.51 16 28 H 0.42 12.99 8.36 -92.71 -0.77 12.22 16 29 H 0.21 2.30 7.62 -2.39 -0.02 2.28 16 30 H 0.20 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.18 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 0.82 7.49 -2.39 -0.02 0.80 16 33 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 0.95 7.59 -2.39 -0.02 0.93 16 40 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -84.72 358.24 -1.40 -86.12 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.08 Total: 20.67 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.68 Total: -33.80 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.23 Total: -81.96 kcal Atomic # 8 Polarization: -96.48 SS G_CDS: -4.46 Total: -100.95 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.72 Total: 45.48 kcal Atomic # 16 Polarization: 64.61 SS G_CDS: -0.18 Total: 64.43 kcal Total: -84.72 -1.40 -86.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431098354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.538 kcal (2) G-P(sol) polarization free energy of solvation -84.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds