Wall clock time and date at job start Tue Mar 31 2020 10:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48505 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47137 * 300.00401 * 3 2 1 6 6 H 1.48500 * 109.47248 * 60.00572 * 3 2 1 7 7 C 1.39097 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99837 * 197.97934 * 7 2 1 9 9 N 1.36745 * 120.00114 * 17.97309 * 7 2 1 10 10 C 1.34772 * 119.99758 * 198.66672 * 9 7 2 11 11 O 1.21779 * 120.00335 * 3.39748 * 10 9 7 12 12 C 1.41807 * 119.99646 * 183.39663 * 10 9 7 13 13 C 1.35137 * 119.99753 * 173.19509 * 12 10 9 14 14 C 1.46938 * 120.00243 * 348.31678 * 13 12 10 15 15 C 1.39999 * 120.12940 * 135.85912 * 14 13 12 16 16 C 1.37663 * 119.94017 * 180.02562 * 15 14 13 17 17 C 1.39052 * 120.30538 * 0.02562 * 16 15 14 18 18 C 1.39315 * 120.08869 * 359.86497 * 17 16 15 19 19 C 1.38237 * 119.99169 * 359.93073 * 18 17 16 20 20 O 1.36143 * 120.75465 * 180.37286 * 18 17 16 21 21 C 1.43168 * 116.69421 * 342.57061 * 20 18 17 22 22 C 1.53467 * 108.22284 * 46.28989 * 21 20 18 23 23 O 1.36001 * 119.22060 * 179.63332 * 17 16 15 24 24 C 1.46503 * 119.99735 * 18.66834 * 9 7 2 25 25 C 1.53001 * 117.49651 * 125.56227 * 24 9 7 26 26 C 1.52993 * 59.99900 * 252.50878 * 25 24 9 27 27 H 0.97008 * 120.00175 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00147 * 352.92428 * 12 10 9 29 29 H 1.08004 * 120.00130 * 168.32243 * 13 12 10 30 30 H 1.07995 * 120.02517 * 0.02562 * 15 14 13 31 31 H 1.08003 * 119.84850 * 180.02562 * 16 15 14 32 32 H 1.07999 * 120.03263 * 180.13216 * 19 18 17 33 33 H 1.08995 * 109.71630 * 165.97385 * 21 20 18 34 34 H 1.09001 * 109.71402 * 286.60878 * 21 20 18 35 35 H 1.08998 * 109.70769 * 59.90009 * 22 21 20 36 36 H 1.09006 * 109.70470 * 180.50888 * 22 21 20 37 37 H 1.09000 * 115.54926 * 271.26717 * 24 9 7 38 38 H 1.08993 * 117.49788 * 0.02562 * 25 24 9 39 39 H 1.08998 * 117.49390 * 145.01660 * 25 24 9 40 40 H 1.09004 * 117.50054 * 252.51270 * 26 25 24 41 41 H 1.09003 * 117.51850 * 107.48113 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.7074 1.3464 -0.0006 5 1 1.8886 2.3965 -1.2125 6 1 1.8888 2.3964 1.2126 7 6 2.0089 -1.2046 -0.0005 8 1 3.0493 -1.2275 0.2882 9 7 1.3752 -2.3598 -0.3665 10 6 1.8974 -3.5533 -0.0211 11 8 2.8995 -3.6027 0.6692 12 6 1.2801 -4.7515 -0.4616 13 6 1.8766 -5.9424 -0.2334 14 6 3.2689 -5.9891 0.2340 15 6 3.6346 -6.8606 1.2668 16 6 4.9401 -6.9009 1.7020 17 6 5.8991 -6.0787 1.1207 18 6 5.5433 -5.2104 0.0909 19 6 4.2356 -5.1666 -0.3551 20 8 6.4728 -4.4050 -0.4929 21 6 7.6945 -4.2061 0.2265 22 6 8.1874 -5.5724 0.7222 23 8 7.1807 -6.1311 1.5729 24 6 0.1287 -2.3000 -1.1339 25 6 0.0712 -3.0789 -2.4496 26 6 0.1557 -1.5514 -2.4680 27 1 -0.4851 0.8401 0.0004 28 1 0.3310 -4.7126 -0.9756 29 1 1.3301 -6.8599 -0.3946 30 1 2.8933 -7.5008 1.7216 31 1 5.2206 -7.5741 2.4985 32 1 3.9595 -4.4953 -1.1548 33 1 8.4411 -3.7628 -0.4322 34 1 7.5172 -3.5484 1.0775 35 1 8.3576 -6.2324 -0.1284 36 1 9.1141 -5.4477 1.2824 37 1 -0.7851 -2.2420 -0.5426 38 1 0.9605 -3.6361 -2.7438 39 1 -0.8807 -3.5336 -2.7239 40 1 -0.7405 -1.0011 -2.7545 41 1 1.1008 -1.1030 -2.7744 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491291580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:06 Heat of formation + Delta-G solvation = -3.525572 kcal Electronic energy + Delta-G solvation = -26628.323429 eV Core-core repulsion = 22862.729213 eV Total energy + Delta-G solvation = -3765.594216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.80772 -39.20941 -37.47543 -36.87112 -35.96650 -33.48671 -32.47351 -31.20080 -30.64496 -29.57615 -27.90116 -25.55522 -24.33974 -23.06414 -22.06789 -21.50328 -21.07648 -20.23237 -18.50125 -17.75906 -17.11992 -16.92700 -16.78996 -15.77630 -15.20069 -15.05629 -14.75231 -14.34532 -14.26869 -14.07526 -13.85787 -13.53890 -13.46159 -13.29594 -12.79392 -12.50790 -12.48578 -11.98420 -11.47913 -11.44159 -11.21777 -11.15637 -10.84258 -10.81243 -10.68721 -10.47529 -10.36944 -10.14570 -9.87915 -9.44806 -9.01385 -8.88449 -8.38623 -7.91129 -7.55388 -7.13463 -6.43509 -3.83064 1.32149 1.93028 2.40951 3.12955 3.21070 3.28019 3.35950 3.56428 4.06885 4.31369 4.44038 4.44618 4.63152 4.82192 4.92489 5.00054 5.06404 5.18054 5.32282 5.35050 5.58429 5.61331 5.70351 5.72851 5.76006 5.91709 5.94888 6.04117 6.19057 6.29375 6.38452 6.52798 6.63969 6.69079 6.82260 6.85785 6.90219 7.10283 7.15170 7.20187 7.34114 7.48114 7.86214 8.09070 8.45984 9.17044 9.37886 10.03612 10.60108 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.004644 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.297605 B = 6027.903346 C = 7250.534348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.038 3.962 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.402 5.402 10 C 0.453 3.547 11 O -0.578 6.578 12 C -0.166 4.166 13 C -0.089 4.089 14 C -0.032 4.032 15 C -0.106 4.106 16 C -0.132 4.132 17 C 0.044 3.956 18 C 0.036 3.964 19 C -0.017 4.017 20 O -0.309 6.309 21 C 0.022 3.978 22 C 0.023 3.977 23 O -0.313 6.313 24 C 0.128 3.872 25 C -0.220 4.220 26 C -0.152 4.152 27 H 0.269 0.731 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.349 -9.819 -3.134 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.168 4.168 3 Si 0.744 3.256 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.425 4.425 8 H 0.122 0.878 9 N -0.117 5.117 10 C 0.246 3.754 11 O -0.466 6.466 12 C -0.187 4.187 13 C -0.111 4.111 14 C -0.033 4.033 15 C -0.125 4.125 16 C -0.151 4.151 17 C 0.000 4.000 18 C -0.008 4.008 19 C -0.037 4.037 20 O -0.224 6.224 21 C -0.054 4.054 22 C -0.053 4.053 23 O -0.228 6.228 24 C 0.022 3.978 25 C -0.258 4.258 26 C -0.190 4.190 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.708 -9.582 -2.803 12.028 hybrid contribution 0.270 1.299 0.021 1.327 sum 6.978 -8.283 -2.782 11.182 Atomic orbital electron populations 1.69920 1.06105 1.27689 1.45483 1.25290 0.95295 0.99731 0.96479 0.85986 0.80227 0.81453 0.77898 1.19130 1.20467 1.20666 1.19742 0.96140 0.83418 1.43227 0.87840 1.43337 1.19701 1.05474 1.43221 1.16878 0.88222 0.83657 0.86605 1.90743 1.27261 1.86099 1.42464 1.22545 1.01689 0.93893 1.00583 1.21924 0.92742 0.96985 0.99415 1.18463 0.92698 0.95851 0.96286 1.20839 0.94826 0.99583 0.97237 1.20035 0.91969 1.00492 1.02621 1.18928 0.84396 0.98456 0.98247 1.18635 0.90158 0.94182 0.97846 1.20322 0.87793 0.95492 1.00047 1.86307 1.25719 1.65184 1.45144 1.23510 0.86501 0.96922 0.98475 1.23523 0.91180 0.94901 0.95681 1.86204 1.13737 1.78086 1.44784 1.21209 0.89786 1.01145 0.85637 1.23584 1.02167 0.95773 1.04269 1.22800 1.02276 0.92167 1.01761 0.92067 0.85676 0.85863 0.85758 0.85772 0.85772 0.86750 0.90773 0.91035 0.86774 0.86895 0.89285 0.89155 0.89584 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.79 10.72 55.50 0.59 -21.19 16 2 C 0.04 0.98 4.77 -17.44 -0.08 0.90 16 3 Si 0.92 20.33 29.59 -169.99 -5.03 15.30 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.09 9.14 -15.04 -0.14 -8.23 16 8 H 0.10 3.02 7.40 -52.48 -0.39 2.63 16 9 N -0.40 -10.04 2.93 -110.89 -0.32 -10.37 16 10 C 0.45 10.97 6.42 -14.90 -0.10 10.87 16 11 O -0.58 -15.65 11.78 5.12 0.06 -15.59 16 12 C -0.17 -3.20 8.02 -39.32 -0.32 -3.52 16 13 C -0.09 -1.52 9.79 -37.16 -0.36 -1.88 16 14 C -0.03 -0.61 4.45 -105.08 -0.47 -1.08 16 15 C -0.11 -1.79 9.78 -39.13 -0.38 -2.17 16 16 C -0.13 -2.23 9.94 -39.49 -0.39 -2.62 16 17 C 0.04 0.81 6.51 -38.88 -0.25 0.55 16 18 C 0.04 0.72 6.48 -39.18 -0.25 0.46 16 19 C -0.02 -0.36 6.58 -38.95 -0.26 -0.62 16 20 O -0.31 -5.75 10.41 -32.94 -0.34 -6.09 16 21 C 0.02 0.30 7.26 37.40 0.27 0.57 16 22 C 0.02 0.28 7.26 37.40 0.27 0.55 16 23 O -0.31 -5.06 10.41 -32.49 -0.34 -5.40 16 24 C 0.13 2.75 3.49 -67.93 -0.24 2.51 16 25 C -0.22 -3.80 7.97 -26.73 -0.21 -4.01 16 26 C -0.15 -3.00 9.00 -26.74 -0.24 -3.24 16 27 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 28 H 0.13 2.12 5.48 -52.49 -0.29 1.84 16 29 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 30 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 32 H 0.12 2.74 7.12 -52.49 -0.37 2.37 16 33 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.11 2.56 7.77 -51.93 -0.40 2.15 16 38 H 0.09 1.55 7.41 -51.93 -0.38 1.16 16 39 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -31.74 338.68 -8.63 -40.37 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.20 Total: 8.82 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -3.15 Total: -10.95 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.27 Total: -31.56 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.62 Total: -27.08 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.74 -8.63 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491291580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.842 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds