Wall clock time and date at job start Tue Mar 31 2020 10:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48505 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47137 * 300.00401 * 3 2 1 6 6 H 1.48500 * 109.47248 * 60.00572 * 3 2 1 7 7 C 1.39097 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99837 * 197.97934 * 7 2 1 9 9 N 1.36745 * 120.00114 * 17.97309 * 7 2 1 10 10 C 1.34772 * 119.99758 * 198.66672 * 9 7 2 11 11 O 1.21779 * 120.00335 * 3.39748 * 10 9 7 12 12 C 1.41807 * 119.99646 * 183.39663 * 10 9 7 13 13 C 1.35137 * 119.99753 * 173.19509 * 12 10 9 14 14 C 1.46938 * 120.00243 * 348.31678 * 13 12 10 15 15 C 1.39999 * 120.12940 * 135.85912 * 14 13 12 16 16 C 1.37663 * 119.94017 * 180.02562 * 15 14 13 17 17 C 1.39052 * 120.30538 * 0.02562 * 16 15 14 18 18 C 1.39315 * 120.08869 * 359.86497 * 17 16 15 19 19 C 1.38237 * 119.99169 * 359.93073 * 18 17 16 20 20 O 1.36143 * 120.75465 * 180.37286 * 18 17 16 21 21 C 1.43168 * 116.69421 * 342.57061 * 20 18 17 22 22 C 1.53467 * 108.22284 * 46.28989 * 21 20 18 23 23 O 1.36001 * 119.22060 * 179.63332 * 17 16 15 24 24 C 1.46503 * 119.99735 * 18.66834 * 9 7 2 25 25 C 1.53001 * 117.49651 * 125.56227 * 24 9 7 26 26 C 1.52993 * 59.99900 * 252.50878 * 25 24 9 27 27 H 0.97008 * 120.00175 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00147 * 352.92428 * 12 10 9 29 29 H 1.08004 * 120.00130 * 168.32243 * 13 12 10 30 30 H 1.07995 * 120.02517 * 0.02562 * 15 14 13 31 31 H 1.08003 * 119.84850 * 180.02562 * 16 15 14 32 32 H 1.07999 * 120.03263 * 180.13216 * 19 18 17 33 33 H 1.08995 * 109.71630 * 165.97385 * 21 20 18 34 34 H 1.09001 * 109.71402 * 286.60878 * 21 20 18 35 35 H 1.08998 * 109.70769 * 59.90009 * 22 21 20 36 36 H 1.09006 * 109.70470 * 180.50888 * 22 21 20 37 37 H 1.09000 * 115.54926 * 271.26717 * 24 9 7 38 38 H 1.08993 * 117.49788 * 0.02562 * 25 24 9 39 39 H 1.08998 * 117.49390 * 145.01660 * 25 24 9 40 40 H 1.09004 * 117.50054 * 252.51270 * 26 25 24 41 41 H 1.09003 * 117.51850 * 107.48113 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.7074 1.3464 -0.0006 5 1 1.8886 2.3965 -1.2125 6 1 1.8888 2.3964 1.2126 7 6 2.0089 -1.2046 -0.0005 8 1 3.0493 -1.2275 0.2882 9 7 1.3752 -2.3598 -0.3665 10 6 1.8974 -3.5533 -0.0211 11 8 2.8995 -3.6027 0.6692 12 6 1.2801 -4.7515 -0.4616 13 6 1.8766 -5.9424 -0.2334 14 6 3.2689 -5.9891 0.2340 15 6 3.6346 -6.8606 1.2668 16 6 4.9401 -6.9009 1.7020 17 6 5.8991 -6.0787 1.1207 18 6 5.5433 -5.2104 0.0909 19 6 4.2356 -5.1666 -0.3551 20 8 6.4728 -4.4050 -0.4929 21 6 7.6945 -4.2061 0.2265 22 6 8.1874 -5.5724 0.7222 23 8 7.1807 -6.1311 1.5729 24 6 0.1287 -2.3000 -1.1339 25 6 0.0712 -3.0789 -2.4496 26 6 0.1557 -1.5514 -2.4680 27 1 -0.4851 0.8401 0.0004 28 1 0.3310 -4.7126 -0.9756 29 1 1.3301 -6.8599 -0.3946 30 1 2.8933 -7.5008 1.7216 31 1 5.2206 -7.5741 2.4985 32 1 3.9595 -4.4953 -1.1548 33 1 8.4411 -3.7628 -0.4322 34 1 7.5172 -3.5484 1.0775 35 1 8.3576 -6.2324 -0.1284 36 1 9.1141 -5.4477 1.2824 37 1 -0.7851 -2.2420 -0.5426 38 1 0.9605 -3.6361 -2.7438 39 1 -0.8807 -3.5336 -2.7239 40 1 -0.7405 -1.0011 -2.7545 41 1 1.1008 -1.1030 -2.7744 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491291580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:06 Heat of formation + Delta-G solvation = -22.834410 kcal Electronic energy + Delta-G solvation = -26629.160723 eV Core-core repulsion = 22862.729213 eV Total energy + Delta-G solvation = -3766.431510 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.10688 -40.91187 -38.91689 -38.17436 -37.62266 -35.19659 -34.05644 -33.05684 -31.88902 -30.96225 -29.28114 -27.32726 -25.65552 -24.57020 -23.56621 -23.10091 -22.55788 -21.62051 -19.94537 -19.22469 -18.85582 -18.40382 -18.09754 -17.38175 -16.94474 -16.36111 -16.11066 -15.99961 -15.81720 -15.38005 -15.35894 -15.00966 -14.92798 -14.65997 -14.37705 -14.03040 -13.96604 -13.55080 -13.14769 -12.94938 -12.72163 -12.67803 -12.43368 -12.26273 -12.18702 -12.07187 -11.94819 -11.65616 -11.37342 -11.05999 -10.68989 -10.37598 -10.15633 -9.70417 -9.10314 -8.61651 -8.33922 -5.85827 -0.12250 0.52202 0.97403 1.34800 1.35990 1.48213 2.14776 2.24965 2.36794 2.62234 2.91268 3.02439 3.18560 3.29037 3.36015 3.74129 3.92216 3.95816 4.08716 4.17292 4.22510 4.30162 4.35216 4.39300 4.50652 4.55067 4.57151 4.62711 4.74673 4.85037 5.04212 5.09178 5.12106 5.26250 5.37187 5.38465 5.41864 5.46054 5.56509 5.71988 5.83922 6.00362 6.15036 6.51971 6.57410 7.24108 7.53993 8.18213 8.67389 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.004644 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.297605 B = 6027.903346 C = 7250.534348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.014 3.986 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.263 1.263 6 H -0.275 1.275 7 C -0.337 4.337 8 H 0.063 0.937 9 N -0.422 5.422 10 C 0.450 3.550 11 O -0.618 6.618 12 C -0.197 4.197 13 C -0.046 4.046 14 C -0.060 4.060 15 C -0.099 4.099 16 C -0.135 4.135 17 C 0.039 3.961 18 C 0.013 3.987 19 C -0.042 4.042 20 O -0.338 6.338 21 C 0.011 3.989 22 C 0.022 3.978 23 O -0.321 6.321 24 C 0.103 3.897 25 C -0.174 4.174 26 C -0.158 4.158 27 H 0.274 0.726 28 H 0.152 0.848 29 H 0.179 0.821 30 H 0.164 0.836 31 H 0.155 0.845 32 H 0.092 0.908 33 H 0.151 0.849 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.157 0.843 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.081 -12.260 -3.286 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.206 1.206 5 H -0.188 1.188 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.081 0.919 9 N -0.138 5.138 10 C 0.245 3.755 11 O -0.508 6.508 12 C -0.217 4.217 13 C -0.067 4.067 14 C -0.060 4.060 15 C -0.117 4.117 16 C -0.154 4.154 17 C -0.006 4.006 18 C -0.031 4.031 19 C -0.061 4.061 20 O -0.253 6.253 21 C -0.064 4.064 22 C -0.053 4.053 23 O -0.236 6.236 24 C -0.002 4.002 25 C -0.212 4.212 26 C -0.196 4.196 27 H 0.084 0.916 28 H 0.170 0.830 29 H 0.196 0.804 30 H 0.181 0.819 31 H 0.173 0.827 32 H 0.110 0.890 33 H 0.169 0.831 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.174 0.826 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.151 0.849 40 H 0.117 0.883 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.429 -12.031 -2.970 13.961 hybrid contribution 0.572 1.874 0.129 1.964 sum 7.001 -10.157 -2.841 12.659 Atomic orbital electron populations 1.69973 1.06485 1.28369 1.45663 1.25796 0.96082 1.01453 0.95762 0.85224 0.78270 0.78440 0.78536 1.20637 1.18758 1.20037 1.19425 0.95059 0.85635 1.46400 0.91904 1.43424 1.20894 1.04950 1.44543 1.17766 0.87328 0.85046 0.85396 1.90712 1.28930 1.87103 1.44047 1.22465 1.03219 0.92299 1.03715 1.22548 0.91603 0.98225 0.94357 1.18842 0.93315 0.96416 0.97423 1.21274 0.95723 0.98771 0.95914 1.20512 0.91809 1.00253 1.02778 1.19176 0.85805 0.98100 0.97543 1.18867 0.90359 0.95167 0.98756 1.20275 0.89294 0.96105 1.00427 1.86252 1.27296 1.65344 1.46452 1.23897 0.85517 0.98226 0.98778 1.23885 0.91305 0.93576 0.96501 1.86179 1.13394 1.78270 1.45806 1.21146 0.87850 1.04914 0.86276 1.23626 1.04156 0.93992 0.99422 1.22750 1.01615 0.94356 1.00848 0.91645 0.83024 0.80380 0.81873 0.82749 0.89016 0.83100 0.92234 0.89701 0.82550 0.88363 0.89344 0.84912 0.88306 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.39 10.72 21.69 0.23 -45.15 16 2 C 0.01 0.74 4.77 84.97 0.41 1.15 16 3 Si 0.97 43.36 29.59 68.60 2.03 45.39 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.34 -19.62 9.14 84.13 0.77 -18.85 16 8 H 0.06 4.04 7.40 -2.91 -0.02 4.02 16 9 N -0.42 -22.15 2.93 -622.92 -1.82 -23.98 16 10 C 0.45 22.69 6.42 85.12 0.55 23.23 16 11 O -0.62 -35.42 11.78 -4.60 -0.05 -35.47 16 12 C -0.20 -7.40 8.02 22.44 0.18 -7.22 16 13 C -0.05 -1.47 9.79 23.84 0.23 -1.24 16 14 C -0.06 -2.19 4.45 -20.16 -0.09 -2.28 16 15 C -0.10 -3.06 9.78 22.56 0.22 -2.83 16 16 C -0.14 -4.26 9.94 22.33 0.22 -4.03 16 17 C 0.04 1.39 6.51 22.72 0.15 1.54 16 18 C 0.01 0.53 6.48 22.53 0.15 0.67 16 19 C -0.04 -1.80 6.58 22.68 0.15 -1.65 16 20 O -0.34 -13.20 10.41 -83.00 -0.86 -14.06 16 21 C 0.01 0.29 7.26 72.14 0.52 0.81 16 22 C 0.02 0.49 7.26 72.14 0.52 1.01 16 23 O -0.32 -9.93 10.41 -81.37 -0.85 -10.78 16 24 C 0.10 4.50 3.49 44.99 0.16 4.66 16 25 C -0.17 -5.73 7.97 30.59 0.24 -5.49 16 26 C -0.16 -6.25 9.00 30.59 0.28 -5.98 16 27 H 0.27 13.36 8.31 -92.70 -0.77 12.59 16 28 H 0.15 4.79 5.48 -2.91 -0.02 4.77 16 29 H 0.18 3.66 8.06 -2.91 -0.02 3.63 16 30 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 31 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.09 4.42 7.12 -2.91 -0.02 4.40 16 33 H 0.15 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.16 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.10 4.53 7.77 -2.39 -0.02 4.51 16 38 H 0.09 2.96 7.41 -2.39 -0.02 2.94 16 39 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.10 3.59 8.14 -2.38 -0.02 3.57 16 41 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -76.50 338.68 4.38 -72.12 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 1.05 Total: 28.43 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 4.65 Total: -16.51 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.59 Total: -69.13 kcal Atomic # 8 Polarization: -58.54 SS G_CDS: -1.77 Total: -60.31 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -76.50 4.38 -72.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491291580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.289 kcal (2) G-P(sol) polarization free energy of solvation -76.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds