Wall clock time and date at job start Tue Mar 31 2020 10:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00067 * 2 1 4 4 H 1.48501 * 109.47220 * 273.83071 * 3 2 1 5 5 H 1.48497 * 109.47246 * 33.83494 * 3 2 1 6 6 H 1.48504 * 109.47513 * 153.83326 * 3 2 1 7 7 C 1.37883 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99748 * 3.01751 * 7 2 1 9 9 C 1.50698 * 119.99957 * 183.02939 * 7 2 1 10 10 C 1.52997 * 115.55312 * 92.53664 * 9 7 2 11 11 N 1.46494 * 109.47499 * 56.28809 * 10 9 7 12 12 C 1.34775 * 120.00243 * 185.13766 * 11 10 9 13 13 O 1.21725 * 120.00041 * 355.00450 * 12 11 10 14 14 C 1.46257 * 120.00211 * 175.00991 * 12 11 10 15 15 C 1.34977 * 119.99979 * 173.47361 * 14 12 11 16 16 C 1.46996 * 120.00317 * 348.72152 * 15 14 12 17 17 C 1.39954 * 120.10968 * 311.88052 * 16 15 14 18 18 C 1.37719 * 119.98183 * 180.02562 * 17 16 15 19 19 C 1.38894 * 120.24779 * 359.93702 * 18 17 16 20 20 C 1.39587 * 120.09477 * 0.05817 * 19 18 17 21 21 C 1.38081 * 120.00656 * 359.97438 * 20 19 18 22 22 O 1.36536 * 108.58540 * 179.97438 * 20 19 18 23 23 C 1.43973 * 105.45859 * 17.32609 * 22 20 19 24 24 O 1.36396 * 131.32657 * 180.02562 * 19 18 17 25 25 C 1.53001 * 117.49564 * 238.20259 * 9 7 2 26 26 C 1.52996 * 117.49679 * 306.85813 * 9 7 2 27 27 H 0.97001 * 120.00076 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46907 * 296.28636 * 10 9 7 29 29 H 1.09003 * 109.47118 * 176.28911 * 10 9 7 30 30 H 0.97001 * 119.99901 * 5.12925 * 11 10 9 31 31 H 1.08004 * 119.99819 * 353.47823 * 14 12 11 32 32 H 1.08001 * 120.00195 * 168.72382 * 15 14 12 33 33 H 1.07998 * 120.01026 * 0.02562 * 17 16 15 34 34 H 1.08000 * 119.87896 * 180.02562 * 18 17 16 35 35 H 1.08000 * 120.05074 * 179.97438 * 21 20 19 36 36 H 1.09004 * 110.57021 * 214.21276 * 23 22 20 37 37 H 1.09002 * 110.56833 * 91.35695 * 23 22 20 38 38 H 1.08999 * 117.50310 * 215.00149 * 25 9 7 39 39 H 1.09001 * 117.49783 * 0.02562 * 25 9 7 40 40 H 1.08998 * 117.50198 * 359.97438 * 26 9 7 41 41 H 1.09008 * 117.49660 * 144.97893 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4156 2.0932 -1.3969 5 1 1.4895 2.6279 0.7795 6 1 3.5849 1.4182 0.6174 7 6 2.0045 -1.1941 -0.0005 8 1 1.4657 -2.1287 -0.0502 9 6 3.5100 -1.1950 0.0684 10 6 4.1061 -1.2935 1.4740 11 7 3.5936 -2.4940 2.1389 12 6 3.9018 -2.7336 3.4289 13 8 4.6786 -2.0023 4.0149 14 6 3.3031 -3.8723 4.1246 15 6 3.7095 -4.1908 5.3717 16 6 4.9124 -3.5619 5.9360 17 6 6.0935 -3.5083 5.1872 18 6 7.2191 -2.9190 5.7186 19 6 7.1872 -2.3752 6.9963 20 6 6.0127 -2.4248 7.7490 21 6 4.8802 -3.0146 7.2235 22 8 6.2435 -1.8285 8.9554 23 6 7.4432 -1.0528 8.7768 24 8 8.1492 -1.7486 7.7328 25 6 4.2688 -1.8793 -1.0703 26 6 4.2648 -0.3525 -0.9617 27 1 -0.4850 0.8400 -0.0004 28 1 3.8261 -0.4116 2.0500 29 1 5.1924 -1.3523 1.4047 30 1 3.0322 -3.1165 1.6508 31 1 2.5359 -4.4583 3.6404 32 1 3.1509 -4.9077 5.9551 33 1 6.1224 -3.9290 4.1930 34 1 8.1296 -2.8782 5.1392 35 1 3.9712 -3.0537 7.8054 36 1 8.0315 -1.0406 9.6944 37 1 7.1997 -0.0376 8.4635 38 1 5.1928 -2.3996 -0.8182 39 1 3.6792 -2.3284 -1.8695 40 1 3.6726 0.2021 -1.6896 41 1 5.1860 0.1321 -0.6379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493075826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:18 Heat of formation + Delta-G solvation = -15.169414 kcal Electronic energy + Delta-G solvation = -25555.571638 eV Core-core repulsion = 21789.472507 eV Total energy + Delta-G solvation = -3766.099131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.11217 -39.57079 -37.86640 -36.95352 -36.30108 -33.51721 -33.28295 -32.16462 -30.55147 -29.24323 -26.90932 -25.83623 -25.35564 -23.55931 -22.83297 -21.89502 -21.49233 -19.64732 -19.00714 -17.93271 -17.69564 -17.24281 -16.78816 -16.43370 -15.90373 -15.24593 -14.87028 -14.77132 -14.50713 -14.20487 -13.87596 -13.85665 -13.64024 -13.31036 -13.00293 -12.90737 -12.77159 -12.68040 -12.48706 -12.09794 -11.93490 -11.21642 -11.12903 -10.99108 -10.94535 -10.48190 -10.23344 -9.65903 -9.54163 -9.39030 -9.18827 -8.78749 -8.67577 -8.59349 -8.23444 -7.67461 -6.20157 -4.24963 0.73666 1.35681 1.76798 2.72616 3.24584 3.36718 3.39722 3.41564 3.62930 3.75521 3.85998 4.36324 4.50119 4.58818 4.67860 4.83317 4.84628 5.03627 5.10273 5.14745 5.20425 5.29426 5.47767 5.56153 5.65068 5.94018 5.97090 6.02517 6.03310 6.13828 6.18538 6.21555 6.37024 6.38159 6.41625 6.48601 6.58466 6.66010 6.92485 7.04027 7.12192 7.15015 7.63872 8.18105 8.35950 8.77026 8.79349 9.43120 10.90997 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.003214 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.032401 B = 8710.309392 C = 8931.888172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.080 3.920 3 Si 0.881 3.119 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.256 1.256 7 C -0.492 4.492 8 H 0.079 0.921 9 C -0.015 4.015 10 C 0.159 3.841 11 N -0.692 5.692 12 C 0.527 3.473 13 O -0.546 6.546 14 C -0.185 4.185 15 C -0.044 4.044 16 C -0.043 4.043 17 C -0.034 4.034 18 C -0.105 4.105 19 C 0.034 3.966 20 C 0.017 3.983 21 C -0.083 4.083 22 O -0.313 6.313 23 C 0.214 3.786 24 O -0.313 6.313 25 C -0.181 4.181 26 C -0.193 4.193 27 H 0.266 0.734 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.405 0.595 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.613 -7.896 12.648 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.123 4.123 3 Si 0.709 3.291 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.180 1.180 7 C -0.529 4.529 8 H 0.097 0.903 9 C -0.016 4.016 10 C 0.035 3.965 11 N -0.340 5.340 12 C 0.314 3.686 13 O -0.427 6.427 14 C -0.206 4.206 15 C -0.063 4.063 16 C -0.044 4.044 17 C -0.052 4.052 18 C -0.124 4.124 19 C -0.011 4.011 20 C -0.027 4.027 21 C -0.102 4.102 22 O -0.230 6.230 23 C 0.102 3.898 24 O -0.229 6.229 25 C -0.218 4.218 26 C -0.231 4.231 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.240 0.760 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.096 -7.217 13.218 19.316 hybrid contribution -0.020 1.093 -0.266 1.125 sum 12.076 -6.124 12.951 18.737 Atomic orbital electron populations 1.69881 1.06387 1.27299 1.49465 1.24989 0.94606 0.99175 0.93561 0.86848 0.80842 0.83284 0.78124 1.20657 1.22305 1.17964 1.20159 0.86200 0.94547 1.52009 0.90318 1.19639 0.94994 1.00510 0.86442 1.21017 0.95228 0.86751 0.93459 1.45813 1.51509 1.25640 1.11054 1.18400 0.82003 0.86038 0.82129 1.90856 1.35539 1.50127 1.66182 1.23226 1.02897 0.98288 0.96215 1.22153 0.93162 0.96892 0.94134 1.18511 0.93910 0.99329 0.92602 1.20816 0.90614 0.95975 0.97839 1.19838 1.00057 1.01511 0.90992 1.19903 0.86409 1.00676 0.94068 1.19499 0.95542 1.02688 0.84933 1.19975 0.95309 1.00254 0.94660 1.87328 1.44112 1.62347 1.29207 1.25545 0.79816 0.93037 0.91378 1.87290 1.30221 1.64356 1.41052 1.22929 1.01232 0.94080 1.03565 1.22906 1.01647 0.93842 1.04702 0.92459 0.91988 0.93808 0.75996 0.84617 0.84454 0.85249 0.85122 0.84969 0.85507 0.90139 0.90897 0.89413 0.89336 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.24 24.87 -169.99 -4.23 17.02 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.26 -5.90 6.01 56.52 0.34 -5.56 16 7 C -0.49 -12.58 8.94 -34.44 -0.31 -12.89 16 8 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 9 C -0.01 -0.31 0.99 -155.66 -0.15 -0.47 16 10 C 0.16 3.22 5.52 -4.05 -0.02 3.19 16 11 N -0.69 -12.26 5.36 -61.76 -0.33 -12.59 16 12 C 0.53 8.86 6.95 -13.04 -0.09 8.77 16 13 O -0.55 -10.61 12.48 5.17 0.06 -10.54 16 14 C -0.19 -2.34 9.92 -37.52 -0.37 -2.72 16 15 C -0.04 -0.49 9.77 -37.19 -0.36 -0.86 16 16 C -0.04 -0.58 4.34 -105.07 -0.46 -1.03 16 17 C -0.03 -0.47 6.77 -39.13 -0.26 -0.73 16 18 C -0.11 -1.46 10.04 -39.53 -0.40 -1.85 16 19 C 0.03 0.49 7.16 -38.84 -0.28 0.21 16 20 C 0.02 0.25 7.13 -39.14 -0.28 -0.03 16 21 C -0.08 -1.12 9.80 -39.00 -0.38 -1.51 16 22 O -0.31 -4.18 11.41 -45.81 -0.52 -4.70 16 23 C 0.21 2.23 8.88 101.05 0.90 3.13 16 24 O -0.31 -4.20 11.40 -45.35 -0.52 -4.72 16 25 C -0.18 -3.37 9.93 -26.70 -0.27 -3.64 16 26 C -0.19 -3.91 7.05 -26.70 -0.19 -4.09 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.06 1.41 7.84 -51.93 -0.41 1.00 16 29 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.41 6.69 8.17 -40.82 -0.33 6.36 16 31 H 0.14 1.37 8.06 -52.48 -0.42 0.94 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.13 1.67 7.45 -52.49 -0.39 1.28 16 34 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.09 1.89 6.37 -51.93 -0.33 1.56 16 41 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -31.97 345.59 -7.88 -39.85 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.31 Total: 8.20 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -3.02 Total: -12.43 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.44 Total: -37.89 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.97 Total: -19.96 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.23 Total: 17.02 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.97 -7.88 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493075826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.679 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds