Wall clock time and date at job start Tue Mar 31 2020 11:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38744 * 119.79163 * 2 1 4 4 C 1.37848 * 120.68516 * 180.02562 * 3 2 1 5 5 C 1.38947 * 119.81391 * 359.97438 * 4 3 2 6 6 O 1.34804 * 133.48777 * 179.97438 * 5 4 3 7 7 C 1.34448 * 110.88893 * 180.02562 * 6 5 4 8 8 C 1.33995 * 110.15088 * 0.02562 * 7 6 5 9 9 C 1.50705 * 126.90526 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46846 * 265.01819 * 9 8 7 11 11 O 1.21279 * 119.99658 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.47584 * 134.49657 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.12025 * 155.36378 * 13 12 10 15 15 O 1.42897 * 113.74068 * 269.15867 * 14 13 12 16 16 C 1.50700 * 113.74246 * 137.95222 * 14 13 12 17 17 H 1.07998 * 119.99659 * 4.91778 * 16 14 13 18 18 C 1.37870 * 120.00275 * 184.91298 * 16 14 13 19 19 N 1.31521 * 119.99939 * 13.83955 * 18 16 14 20 20 Si 1.86793 * 120.00241 * 193.83635 * 18 16 14 21 21 H 1.48503 * 109.47305 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47166 * 299.99995 * 20 18 16 23 23 H 1.48499 * 109.46987 * 59.99962 * 20 18 16 24 24 C 1.47585 * 134.49296 * 0.02562 * 12 10 9 25 25 C 1.40481 * 119.22870 * 0.27957 * 5 4 3 26 26 C 1.36738 * 119.78964 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47103 * 89.99306 * 1 2 3 28 28 H 1.09000 * 109.46580 * 209.99761 * 1 2 3 29 29 H 1.09001 * 109.46507 * 329.99760 * 1 2 3 30 30 H 1.07994 * 119.65639 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.09363 * 179.97438 * 4 3 2 32 32 H 1.08001 * 124.92707 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47417 * 145.02290 * 9 8 7 34 34 H 1.08994 * 109.47515 * 25.01651 * 9 8 7 35 35 H 1.09003 * 113.76727 * 41.05948 * 13 12 10 36 36 H 1.09000 * 113.76915 * 269.66851 * 13 12 10 37 37 H 0.96698 * 114.00098 * 171.44601 * 15 14 13 38 38 H 0.97007 * 119.99483 * 5.87247 * 19 18 16 39 39 H 1.08994 * 113.77423 * 90.33340 * 24 12 10 40 40 H 1.09010 * 113.76672 * 318.93187 * 24 12 10 41 41 H 1.08003 * 120.14096 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2041 0.0000 4 6 3.5747 1.2256 -0.0005 5 6 4.2842 0.0309 -0.0005 6 8 5.5989 -0.2673 -0.0014 7 6 5.7885 -1.5983 -0.0015 8 6 4.6083 -2.2327 -0.0013 9 6 4.3817 -3.7227 -0.0018 10 6 4.1836 -4.2001 -1.4175 11 8 4.2230 -3.4085 -2.3355 12 7 3.9637 -5.5068 -1.6634 13 6 3.7338 -6.3054 -2.8831 14 6 4.2749 -7.5000 -2.0768 15 8 5.6867 -7.6840 -2.1984 16 6 3.4964 -8.7737 -2.2830 17 1 2.6960 -8.8060 -3.0074 18 6 3.8060 -9.8978 -1.5472 19 7 4.5798 -9.7981 -0.4884 20 14 3.1265 -11.5623 -2.0539 21 1 3.6030 -12.6011 -1.1057 22 1 1.6423 -11.5180 -2.0339 23 1 3.5934 -11.8911 -3.4247 24 6 3.8551 -6.7138 -0.8211 25 6 3.5805 -1.1849 -0.0060 26 6 2.1864 -1.1867 0.0005 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5139 30 1 1.6474 2.1341 -0.0004 31 1 4.1016 2.1683 -0.0009 32 1 6.7524 -2.0856 -0.0017 33 1 3.4950 -3.9556 0.5875 34 1 5.2479 -4.2221 0.4321 35 1 4.3677 -6.0183 -3.7221 36 1 2.6825 -6.3990 -3.1552 37 1 6.0503 -8.3472 -1.5959 38 1 4.8631 -8.9247 -0.1752 39 1 2.8394 -6.9274 -0.4883 40 1 4.5859 -6.7530 -0.0133 41 1 1.6452 -2.1214 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529072112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:44 Heat of formation + Delta-G solvation = -26.450361 kcal Electronic energy + Delta-G solvation = -25559.604444 eV Core-core repulsion = 21793.016134 eV Total energy + Delta-G solvation = -3766.588310 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.46695 -39.68851 -38.30388 -37.64637 -34.32599 -33.83955 -32.42606 -32.25115 -30.47027 -29.07449 -27.24832 -26.83386 -25.54902 -24.68500 -23.12157 -21.61306 -20.90305 -19.91072 -18.50637 -17.94113 -17.16696 -17.06955 -16.52803 -15.97330 -15.57464 -15.19551 -15.12012 -14.67915 -14.22258 -14.04312 -13.96408 -13.89110 -13.76516 -13.29862 -12.73102 -12.71249 -12.45583 -12.32241 -12.15106 -11.95617 -11.74697 -11.63507 -11.51660 -11.17309 -10.96159 -10.89898 -10.59592 -10.24772 -10.07953 -9.48928 -9.37045 -8.86909 -8.48263 -8.46097 -8.15513 -7.92272 -6.72564 -4.51931 0.88289 1.28314 2.28559 2.78663 3.08436 3.28111 3.32360 3.44089 3.50294 3.65756 4.29296 4.37969 4.53070 4.70216 4.75127 4.83366 4.95506 5.03663 5.15718 5.22838 5.32776 5.36193 5.41659 5.45772 5.53268 5.64710 5.66743 5.78774 5.87311 6.03058 6.10398 6.15425 6.18486 6.28532 6.35238 6.36903 6.46057 6.50333 6.59663 6.74553 7.14105 7.61686 8.05468 8.31730 8.41116 8.64358 8.79928 9.18314 10.59016 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.002919 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.395532 B = 9591.315553 C =10250.199936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.098 4.098 4 C -0.104 4.104 5 C 0.045 3.955 6 O -0.193 6.193 7 C 0.017 3.983 8 C -0.151 4.151 9 C -0.064 4.064 10 C 0.528 3.472 11 O -0.552 6.552 12 N -0.635 5.635 13 C 0.123 3.877 14 C 0.217 3.783 15 O -0.566 6.566 16 C -0.618 4.618 17 H 0.065 0.935 18 C 0.037 3.963 19 N -0.898 5.898 20 Si 1.066 2.934 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.069 3.931 25 C -0.106 4.106 26 C -0.067 4.067 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.207 0.793 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.375 0.625 38 H 0.268 0.732 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.826 15.894 5.432 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C -0.116 4.116 4 C -0.123 4.123 5 C -0.002 4.002 6 O -0.095 6.095 7 C -0.048 4.048 8 C -0.153 4.153 9 C -0.104 4.104 10 C 0.318 3.682 11 O -0.431 6.431 12 N -0.369 5.369 13 C 0.001 3.999 14 C 0.176 3.824 15 O -0.373 6.373 16 C -0.656 4.656 17 H 0.083 0.917 18 C -0.168 4.168 19 N -0.534 5.534 20 Si 0.893 3.107 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.054 4.054 25 C -0.107 4.107 26 C -0.085 4.085 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.224 0.776 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.224 0.776 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.588 15.585 4.899 16.726 hybrid contribution -0.018 0.999 0.099 1.004 sum -3.605 16.583 4.998 17.692 Atomic orbital electron populations 1.20747 0.90746 1.02716 1.02431 1.19487 0.96355 0.92633 1.02094 1.20749 0.92456 0.97832 1.00523 1.19861 0.93085 0.94498 1.04833 1.19582 0.81417 0.95481 1.03742 1.83981 1.24368 1.24643 1.76464 1.23691 0.99706 0.79488 1.01948 1.20472 0.91901 0.94367 1.08580 1.19895 1.04693 0.90233 0.95586 1.20081 0.77086 0.80461 0.90619 1.90667 1.52643 1.53289 1.46488 1.50190 1.69253 1.05088 1.12384 1.23279 1.00194 0.87013 0.89365 1.20138 0.80354 0.92429 0.89522 1.86255 1.22588 1.63449 1.65015 1.22235 1.20580 0.96576 1.26170 0.91678 1.25976 0.94271 1.03753 0.92843 1.70955 1.33251 1.27701 1.21494 0.83587 0.76003 0.74879 0.76250 1.20543 1.21106 1.20994 1.24483 1.01361 0.81639 0.97930 1.19704 0.94222 0.92273 1.04461 1.20140 0.91522 0.98124 0.98747 0.91175 0.91507 0.91543 0.84992 0.85172 0.77618 0.88234 0.87990 0.91081 0.89439 0.77630 0.92044 0.89498 0.91618 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.00 36.01 0.36 -0.59 16 2 C -0.11 -1.23 5.85 -104.98 -0.61 -1.84 16 3 C -0.10 -1.03 9.66 -39.54 -0.38 -1.42 16 4 C -0.10 -1.24 10.07 -39.46 -0.40 -1.63 16 5 C 0.04 0.66 7.42 -38.47 -0.29 0.37 16 6 O -0.19 -2.83 10.58 3.92 0.04 -2.78 16 7 C 0.02 0.23 11.89 29.24 0.35 0.57 16 8 C -0.15 -2.32 4.85 -102.66 -0.50 -2.82 16 9 C -0.06 -0.97 6.00 -29.03 -0.17 -1.15 16 10 C 0.53 10.39 8.05 -10.98 -0.09 10.30 16 11 O -0.55 -12.71 16.76 5.56 0.09 -12.62 16 12 N -0.63 -12.88 3.61 -178.25 -0.64 -13.53 16 13 C 0.12 2.66 8.22 -2.97 -0.02 2.63 16 14 C 0.22 4.99 1.08 -90.83 -0.10 4.89 16 15 O -0.57 -13.64 13.45 -35.23 -0.47 -14.11 16 16 C -0.62 -15.39 8.56 -34.44 -0.29 -15.69 16 17 H 0.06 1.61 7.85 -52.49 -0.41 1.20 16 18 C 0.04 0.93 5.26 -17.82 -0.09 0.84 16 19 N -0.90 -23.07 12.80 55.43 0.71 -22.36 16 20 Si 1.07 22.38 29.93 -169.99 -5.09 17.30 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 C 0.07 1.39 7.05 -2.95 -0.02 1.37 16 25 C -0.11 -1.64 6.38 -105.16 -0.67 -2.31 16 26 C -0.07 -0.94 9.68 -39.69 -0.38 -1.32 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.54 8.08 -51.93 -0.42 0.13 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.21 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 37 H 0.37 8.78 6.95 45.56 0.32 9.10 16 38 H 0.27 6.63 5.53 -40.82 -0.23 6.41 16 39 H 0.09 1.72 8.09 -51.93 -0.42 1.30 16 40 H 0.07 1.25 7.80 -51.92 -0.41 0.85 16 41 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -31.22 353.74 -7.93 -39.15 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -4.58 Total: 11.39 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -3.32 Total: -7.78 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.07 Total: -35.88 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.34 Total: -29.52 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.09 Total: 17.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.22 -7.93 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529072112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.704 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds