Wall clock time and date at job start Tue Mar 31 2020 11:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38744 * 119.79163 * 2 1 4 4 C 1.37848 * 120.68516 * 180.02562 * 3 2 1 5 5 C 1.38947 * 119.81391 * 359.97438 * 4 3 2 6 6 O 1.34804 * 133.48777 * 179.97438 * 5 4 3 7 7 C 1.34448 * 110.88893 * 180.02562 * 6 5 4 8 8 C 1.33995 * 110.15088 * 0.02562 * 7 6 5 9 9 C 1.50705 * 126.90526 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46846 * 265.01819 * 9 8 7 11 11 O 1.21279 * 119.99658 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.47584 * 134.49657 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.12025 * 155.36378 * 13 12 10 15 15 O 1.42897 * 113.74068 * 269.15867 * 14 13 12 16 16 C 1.50700 * 113.74246 * 137.95222 * 14 13 12 17 17 H 1.07998 * 119.99659 * 4.91778 * 16 14 13 18 18 C 1.37870 * 120.00275 * 184.91298 * 16 14 13 19 19 N 1.31521 * 119.99939 * 13.83955 * 18 16 14 20 20 Si 1.86793 * 120.00241 * 193.83635 * 18 16 14 21 21 H 1.48503 * 109.47305 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47166 * 299.99995 * 20 18 16 23 23 H 1.48499 * 109.46987 * 59.99962 * 20 18 16 24 24 C 1.47585 * 134.49296 * 0.02562 * 12 10 9 25 25 C 1.40481 * 119.22870 * 0.27957 * 5 4 3 26 26 C 1.36738 * 119.78964 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47103 * 89.99306 * 1 2 3 28 28 H 1.09000 * 109.46580 * 209.99761 * 1 2 3 29 29 H 1.09001 * 109.46507 * 329.99760 * 1 2 3 30 30 H 1.07994 * 119.65639 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.09363 * 179.97438 * 4 3 2 32 32 H 1.08001 * 124.92707 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47417 * 145.02290 * 9 8 7 34 34 H 1.08994 * 109.47515 * 25.01651 * 9 8 7 35 35 H 1.09003 * 113.76727 * 41.05948 * 13 12 10 36 36 H 1.09000 * 113.76915 * 269.66851 * 13 12 10 37 37 H 0.96698 * 114.00098 * 171.44601 * 15 14 13 38 38 H 0.97007 * 119.99483 * 5.87247 * 19 18 16 39 39 H 1.08994 * 113.77423 * 90.33340 * 24 12 10 40 40 H 1.09010 * 113.76672 * 318.93187 * 24 12 10 41 41 H 1.08003 * 120.14096 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2041 0.0000 4 6 3.5747 1.2256 -0.0005 5 6 4.2842 0.0309 -0.0005 6 8 5.5989 -0.2673 -0.0014 7 6 5.7885 -1.5983 -0.0015 8 6 4.6083 -2.2327 -0.0013 9 6 4.3817 -3.7227 -0.0018 10 6 4.1836 -4.2001 -1.4175 11 8 4.2230 -3.4085 -2.3355 12 7 3.9637 -5.5068 -1.6634 13 6 3.7338 -6.3054 -2.8831 14 6 4.2749 -7.5000 -2.0768 15 8 5.6867 -7.6840 -2.1984 16 6 3.4964 -8.7737 -2.2830 17 1 2.6960 -8.8060 -3.0074 18 6 3.8060 -9.8978 -1.5472 19 7 4.5798 -9.7981 -0.4884 20 14 3.1265 -11.5623 -2.0539 21 1 3.6030 -12.6011 -1.1057 22 1 1.6423 -11.5180 -2.0339 23 1 3.5934 -11.8911 -3.4247 24 6 3.8551 -6.7138 -0.8211 25 6 3.5805 -1.1849 -0.0060 26 6 2.1864 -1.1867 0.0005 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5139 30 1 1.6474 2.1341 -0.0004 31 1 4.1016 2.1683 -0.0009 32 1 6.7524 -2.0856 -0.0017 33 1 3.4950 -3.9556 0.5875 34 1 5.2479 -4.2221 0.4321 35 1 4.3677 -6.0183 -3.7221 36 1 2.6825 -6.3990 -3.1552 37 1 6.0503 -8.3472 -1.5959 38 1 4.8631 -8.9247 -0.1752 39 1 2.8394 -6.9274 -0.4883 40 1 4.5859 -6.7530 -0.0133 41 1 1.6452 -2.1214 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529072112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:43 Heat of formation + Delta-G solvation = -46.028779 kcal Electronic energy + Delta-G solvation = -25560.453428 eV Core-core repulsion = 21793.016134 eV Total energy + Delta-G solvation = -3767.437294 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.48959 -41.35708 -39.32186 -39.21661 -36.13227 -34.99704 -34.33618 -33.10665 -31.64196 -30.45163 -28.60948 -27.71909 -27.24889 -26.44693 -24.04356 -22.55970 -22.45974 -21.22917 -20.21302 -19.63243 -18.23426 -18.16601 -17.96600 -17.19170 -16.98918 -16.79919 -16.35138 -16.22806 -15.68827 -15.54358 -15.16714 -14.94361 -14.75356 -14.50988 -14.27091 -14.06118 -13.88732 -13.63903 -13.42544 -13.12059 -12.96904 -12.91423 -12.64414 -12.60584 -12.55830 -12.38312 -11.90610 -11.84322 -11.35430 -11.16399 -10.93392 -10.71793 -10.22663 -9.65763 -9.43343 -9.16866 -8.67386 -6.48013 -0.08167 0.31733 1.19045 1.53850 1.61527 1.65014 1.79994 1.86586 1.93405 2.55962 2.66637 2.91173 3.36696 3.40831 3.49654 3.64863 3.80520 3.90549 3.93543 4.05039 4.28968 4.31686 4.34336 4.38904 4.41431 4.50522 4.50631 4.61909 4.64883 4.77835 4.79270 4.82187 4.91181 4.98346 5.12301 5.22239 5.24574 5.37789 5.57122 5.69107 5.74629 6.09106 6.13551 6.46852 6.71969 6.93675 7.06166 7.27379 8.66071 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.002919 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.395532 B = 9591.315553 C =10250.199936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.093 4.093 4 C -0.107 4.107 5 C 0.016 3.984 6 O -0.201 6.201 7 C 0.021 3.979 8 C -0.182 4.182 9 C -0.051 4.051 10 C 0.525 3.475 11 O -0.589 6.589 12 N -0.634 5.634 13 C 0.120 3.880 14 C 0.199 3.801 15 O -0.576 6.576 16 C -0.634 4.634 17 H 0.059 0.941 18 C 0.001 3.999 19 N -0.914 5.914 20 Si 1.108 2.892 21 H -0.283 1.283 22 H -0.270 1.270 23 H -0.279 1.279 24 C 0.086 3.914 25 C -0.133 4.133 26 C -0.097 4.097 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.171 0.829 31 H 0.156 0.844 32 H 0.238 0.762 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.375 0.625 38 H 0.266 0.734 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 17.002 6.277 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.111 4.111 4 C -0.125 4.125 5 C -0.031 4.031 6 O -0.102 6.102 7 C -0.044 4.044 8 C -0.184 4.184 9 C -0.091 4.091 10 C 0.317 3.683 11 O -0.471 6.471 12 N -0.368 5.368 13 C -0.003 4.003 14 C 0.159 3.841 15 O -0.384 6.384 16 C -0.672 4.672 17 H 0.078 0.922 18 C -0.201 4.201 19 N -0.551 5.551 20 Si 0.931 3.069 21 H -0.209 1.209 22 H -0.195 1.195 23 H -0.205 1.205 24 C -0.037 4.037 25 C -0.134 4.134 26 C -0.115 4.115 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.188 0.812 31 H 0.174 0.826 32 H 0.254 0.746 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.224 0.776 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.519 16.710 5.757 18.242 hybrid contribution 0.247 0.740 -0.208 0.807 sum -4.271 17.450 5.549 18.803 Atomic orbital electron populations 1.20818 0.88573 1.04064 1.03067 1.19926 0.98021 0.92272 1.00173 1.21234 0.92180 0.98953 0.98740 1.20335 0.93766 0.94662 1.03706 1.20066 0.81404 0.96382 1.05240 1.83965 1.24656 1.25022 1.76580 1.24303 1.00616 0.79283 1.00211 1.20634 0.92750 0.94419 1.10560 1.19851 1.06307 0.90503 0.92403 1.20896 0.75689 0.79570 0.92169 1.90642 1.54197 1.54052 1.48187 1.50199 1.69384 1.05554 1.11697 1.23260 1.00477 0.87023 0.89524 1.20318 0.79686 0.92486 0.91624 1.86240 1.23322 1.63466 1.65341 1.22457 1.20822 0.97786 1.26145 0.92243 1.27030 0.94092 1.06463 0.92481 1.71015 1.34130 1.27785 1.22188 0.83020 0.76356 0.71633 0.75920 1.20864 1.19540 1.20516 1.24248 1.01830 0.80557 0.97018 1.20026 0.95069 0.92890 1.05432 1.20330 0.91324 0.99121 1.00700 0.90733 0.91360 0.89079 0.81192 0.82607 0.74642 0.86778 0.85725 0.92327 0.88423 0.77623 0.92236 0.89016 0.90278 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.00 71.24 0.71 -0.92 16 2 C -0.10 -2.26 5.85 -20.09 -0.12 -2.37 16 3 C -0.09 -1.75 9.66 22.30 0.22 -1.53 16 4 C -0.11 -2.34 10.07 22.35 0.23 -2.12 16 5 C 0.02 0.46 7.42 22.99 0.17 0.63 16 6 O -0.20 -5.81 10.58 -8.87 -0.09 -5.90 16 7 C 0.02 0.55 11.89 66.85 0.79 1.35 16 8 C -0.18 -5.55 4.85 -18.59 -0.09 -5.64 16 9 C -0.05 -1.51 6.00 29.11 0.17 -1.34 16 10 C 0.53 20.61 8.05 87.66 0.71 21.32 16 11 O -0.59 -27.56 16.76 -3.03 -0.05 -27.61 16 12 N -0.63 -25.60 3.61 -840.07 -3.03 -28.63 16 13 C 0.12 5.20 8.22 86.48 0.71 5.91 16 14 C 0.20 9.19 1.08 -10.87 -0.01 9.18 16 15 O -0.58 -27.90 13.45 -148.98 -2.00 -29.91 16 16 C -0.63 -31.50 8.56 25.60 0.22 -31.28 16 17 H 0.06 2.95 7.85 -2.91 -0.02 2.92 16 18 C 0.00 0.07 5.26 84.65 0.45 0.52 16 19 N -0.91 -46.49 12.80 21.45 0.27 -46.21 16 20 Si 1.11 44.43 29.93 68.60 2.05 46.48 16 21 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 24 C 0.09 3.41 7.05 86.49 0.61 4.02 16 25 C -0.13 -4.16 6.38 -20.22 -0.13 -4.29 16 26 C -0.10 -2.69 9.68 22.20 0.21 -2.48 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 29 H 0.09 0.92 8.08 -2.39 -0.02 0.90 16 30 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 31 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.24 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 35 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.10 3.98 8.09 -2.39 -0.02 3.96 16 37 H 0.37 17.68 6.95 -74.06 -0.52 17.17 16 38 H 0.27 13.09 5.53 -92.70 -0.51 12.58 16 39 H 0.09 3.55 8.09 -2.39 -0.02 3.53 16 40 H 0.08 2.91 7.80 -2.38 -0.02 2.90 16 41 H 0.12 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -67.44 353.74 2.80 -64.64 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: 0.80 Total: 36.18 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.85 Total: -9.04 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -2.76 Total: -74.84 kcal Atomic # 8 Polarization: -61.27 SS G_CDS: -2.15 Total: -63.42 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.05 Total: 46.48 kcal Total: -67.44 2.80 -64.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529072112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.614 kcal (2) G-P(sol) polarization free energy of solvation -67.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds