Wall clock time and date at job start Tue Mar 31 2020 11:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86801 * 120.00335 * 2 1 4 4 H 1.48502 * 109.47104 * 270.00664 * 3 2 1 5 5 H 1.48497 * 109.47090 * 30.00476 * 3 2 1 6 6 H 1.48497 * 109.47038 * 150.00192 * 3 2 1 7 7 C 1.40052 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.46369 * 120.00030 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00161 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99983 * 180.02562 * 9 7 2 12 12 C 1.46495 * 119.99874 * 179.97438 * 11 9 7 13 13 C 1.50712 * 109.47152 * 180.02562 * 12 11 9 14 14 C 1.38260 * 119.99438 * 270.02508 * 13 12 11 15 15 C 1.38208 * 119.99463 * 179.97438 * 14 13 12 16 16 C 1.38261 * 120.00219 * 359.81246 * 15 14 13 17 17 C 1.38211 * 119.99713 * 0.41405 * 16 15 14 18 18 C 1.50706 * 120.00088 * 179.81051 * 17 16 15 19 19 O 1.42895 * 109.47147 * 269.73362 * 18 17 16 20 20 C 1.42901 * 113.99948 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47372 * 179.97438 * 20 19 18 22 22 C 1.34519 * 125.78677 * 89.71555 * 21 20 19 23 23 C 1.41385 * 106.83849 * 179.89224 * 22 21 20 24 24 C 1.34511 * 106.83993 * 0.37161 * 23 22 21 25 25 O 1.34298 * 125.79079 * 270.02791 * 21 20 19 26 26 C 1.38205 * 120.00091 * 89.99590 * 13 12 11 27 27 H 0.97004 * 119.99629 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00088 * 0.02562 * 11 9 7 29 29 H 1.08994 * 109.47636 * 60.00651 * 12 11 9 30 30 H 1.09004 * 109.47318 * 299.99805 * 12 11 9 31 31 H 1.07992 * 120.00454 * 359.97438 * 14 13 12 32 32 H 1.08001 * 120.00011 * 180.02562 * 15 14 13 33 33 H 1.08005 * 119.99966 * 180.23373 * 16 15 14 34 34 H 1.09001 * 109.46953 * 29.72877 * 18 17 16 35 35 H 1.09000 * 109.47318 * 149.72475 * 18 17 16 36 36 H 1.08995 * 109.47354 * 300.00131 * 20 19 18 37 37 H 1.09003 * 109.47182 * 59.99587 * 20 19 18 38 38 H 1.08004 * 126.57701 * 0.02562 * 22 21 20 39 39 H 1.08003 * 126.57737 * 180.16321 * 23 22 21 40 40 H 1.07998 * 125.78795 * 179.74771 * 24 23 22 41 41 H 1.08009 * 120.00262 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4384 2.6526 0.7001 6 1 3.5383 1.4400 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 0.0004 11 7 1.9488 -3.6477 -0.0005 12 6 1.2163 -4.9164 0.0000 13 6 2.1956 -6.0620 0.0005 14 6 2.6451 -6.5876 -1.1967 15 6 3.5435 -7.6378 -1.1962 16 6 3.9957 -8.1602 0.0014 17 6 3.5427 -7.6378 1.1981 18 6 4.0323 -8.2100 2.5035 19 8 3.1628 -9.2660 2.9166 20 6 3.5401 -9.8806 4.1503 21 6 2.5590 -10.9735 4.4879 22 6 2.6573 -12.2619 4.1139 23 6 1.5312 -12.9302 4.6471 24 6 0.8079 -12.0085 5.3080 25 8 1.4353 -10.8252 5.2082 26 6 2.6446 -6.5867 1.1976 27 1 -0.4850 0.8401 0.0004 28 1 2.9189 -3.6478 -0.0002 29 1 0.5893 -4.9744 -0.8897 30 1 0.5899 -4.9739 0.8903 31 1 2.2942 -6.1775 -2.1321 32 1 3.8950 -8.0481 -2.1313 33 1 4.7007 -8.9784 0.0017 34 1 5.0416 -8.6005 2.3732 35 1 4.0405 -7.4279 3.2627 36 1 4.5391 -10.3057 4.0539 37 1 3.5384 -9.1333 4.9440 38 1 3.4463 -12.7018 3.5219 39 1 1.2951 -13.9787 4.5409 40 1 -0.1201 -12.1894 5.8300 41 1 2.2935 -6.1760 2.1329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543960423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:25 Heat of formation + Delta-G solvation = -43.512320 kcal Electronic energy + Delta-G solvation = -24069.585292 eV Core-core repulsion = 20302.257120 eV Total energy + Delta-G solvation = -3767.328172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.81693 -39.59347 -38.01959 -37.06174 -33.84699 -33.31848 -32.44150 -32.10299 -30.72677 -30.59027 -26.91760 -26.61864 -25.41319 -24.81216 -22.04915 -21.98983 -20.92916 -20.57253 -19.61142 -17.85101 -17.37695 -17.06782 -16.38820 -16.24109 -15.85510 -15.54109 -15.29873 -15.06152 -14.67663 -14.22181 -13.97946 -13.59132 -13.22828 -13.11665 -12.95894 -12.81625 -12.66191 -12.59728 -12.24983 -12.07866 -11.85048 -11.40997 -11.16186 -10.99333 -10.78252 -10.76557 -10.42992 -10.21432 -10.21075 -9.97805 -8.90039 -8.84085 -8.76744 -8.70739 -7.57440 -7.49053 -6.16967 -4.62586 1.18593 1.44959 1.48975 2.28767 2.65531 3.15130 3.21764 3.25329 3.54268 4.00884 4.14433 4.40221 4.60335 4.65691 4.71064 4.75767 4.79682 4.91288 4.96580 4.98997 5.11815 5.16417 5.21880 5.30237 5.49428 5.56629 5.61101 5.65184 5.77002 5.77878 5.97876 6.07268 6.18224 6.31156 6.46252 6.52203 6.58130 6.80055 6.84489 6.88918 7.07675 7.44867 7.94646 8.09828 8.34580 9.03804 9.55334 10.61447 10.79895 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002203 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.431352 B =12704.379186 C =13327.037449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.763 5.763 12 C 0.169 3.831 13 C -0.089 4.089 14 C -0.095 4.095 15 C -0.126 4.126 16 C -0.102 4.102 17 C -0.099 4.099 18 C 0.106 3.894 19 O -0.375 6.375 20 C 0.141 3.859 21 C -0.016 4.016 22 C -0.187 4.187 23 C -0.220 4.220 24 C -0.031 4.031 25 O -0.170 6.170 26 C -0.081 4.081 27 H 0.268 0.732 28 H 0.381 0.619 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.204 0.796 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.920 -23.466 7.238 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.464 6.464 11 N -0.418 5.418 12 C 0.045 3.955 13 C -0.089 4.089 14 C -0.114 4.114 15 C -0.144 4.144 16 C -0.120 4.120 17 C -0.099 4.099 18 C 0.031 3.969 19 O -0.295 6.295 20 C 0.065 3.935 21 C -0.066 4.066 22 C -0.206 4.206 23 C -0.239 4.239 24 C -0.099 4.099 25 O -0.066 6.066 26 C -0.099 4.099 27 H 0.079 0.921 28 H 0.212 0.788 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.221 0.779 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.563 -23.123 7.262 25.705 hybrid contribution 1.064 0.495 0.029 1.174 sum 9.628 -22.628 7.291 25.649 Atomic orbital electron populations 1.70025 1.07050 1.27240 1.35378 1.25717 0.94628 1.00290 0.92653 0.86368 0.80133 0.81399 0.78812 1.19751 1.20468 1.18931 1.20874 0.93572 0.89308 1.54386 0.91428 1.18252 0.87212 0.82363 0.76337 1.90602 1.14104 1.86743 1.54918 1.46200 1.08594 1.04231 1.82820 1.19813 0.92116 0.82073 1.01526 1.20213 0.98321 0.97450 0.92922 1.21201 0.96472 0.95700 0.98025 1.21087 0.98295 0.97278 0.97779 1.20952 0.99927 0.99188 0.91946 1.19430 0.99646 0.97272 0.93562 1.21344 0.92580 0.89155 0.93841 1.88088 1.52744 1.50534 1.38130 1.20608 0.93139 0.92008 0.87736 1.21962 0.89341 0.95801 0.99489 1.21649 1.01271 0.93343 1.04382 1.21862 0.97004 1.01115 1.03898 1.24126 0.99456 0.82272 1.04081 1.84039 1.30853 1.34036 1.57636 1.21014 0.95416 0.95299 0.98192 0.92113 0.78781 0.92431 0.92486 0.85724 0.86016 0.86322 0.92191 0.91946 0.89983 0.91309 0.83303 0.83273 0.77905 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.28 11.83 55.55 0.66 -22.63 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.28 29.56 -169.99 -5.02 15.26 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.54 -15.54 9.54 -35.63 -0.34 -15.88 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 9 C 0.55 16.01 7.75 -12.99 -0.10 15.91 16 10 O -0.58 -19.12 15.02 5.20 0.08 -19.04 16 11 N -0.76 -17.44 5.54 -62.90 -0.35 -17.78 16 12 C 0.17 3.38 5.80 -5.19 -0.03 3.35 16 13 C -0.09 -1.42 5.25 -104.62 -0.55 -1.97 16 14 C -0.10 -1.36 9.70 -39.58 -0.38 -1.74 16 15 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 16 C -0.10 -1.19 9.70 -39.58 -0.38 -1.58 16 17 C -0.10 -1.26 5.51 -104.62 -0.58 -1.84 16 18 C 0.11 1.09 6.06 36.01 0.22 1.31 16 19 O -0.37 -4.45 10.31 -35.23 -0.36 -4.81 16 20 C 0.14 1.27 6.47 36.01 0.23 1.50 16 21 C -0.02 -0.17 6.95 -35.62 -0.25 -0.42 16 22 C -0.19 -1.77 10.81 -39.70 -0.43 -2.20 16 23 C -0.22 -1.87 10.91 -39.70 -0.43 -2.31 16 24 C -0.03 -0.27 12.09 29.41 0.36 0.09 16 25 O -0.17 -1.94 10.65 5.71 0.06 -1.87 16 26 C -0.08 -1.19 9.36 -39.59 -0.37 -1.56 16 27 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 28 H 0.38 7.80 8.44 -40.82 -0.34 7.45 16 29 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 30 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 31 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.06 0.58 8.09 -51.93 -0.42 0.17 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -36.89 365.28 -8.34 -45.23 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.38 Total: 7.05 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.53 Total: -6.90 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.31 Total: -40.41 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.22 Total: -25.73 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.89 -8.34 -45.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543960423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.718 kcal (2) G-P(sol) polarization free energy of solvation -36.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds