Wall clock time and date at job start Tue Mar 31 2020 11:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86801 * 120.00335 * 2 1 4 4 H 1.48502 * 109.47104 * 270.00664 * 3 2 1 5 5 H 1.48497 * 109.47090 * 30.00476 * 3 2 1 6 6 H 1.48497 * 109.47038 * 150.00192 * 3 2 1 7 7 C 1.40052 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.46369 * 120.00030 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00161 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99983 * 180.02562 * 9 7 2 12 12 C 1.46495 * 119.99874 * 179.97438 * 11 9 7 13 13 C 1.50712 * 109.47152 * 180.02562 * 12 11 9 14 14 C 1.38260 * 119.99438 * 270.02508 * 13 12 11 15 15 C 1.38208 * 119.99463 * 179.97438 * 14 13 12 16 16 C 1.38261 * 120.00219 * 359.81246 * 15 14 13 17 17 C 1.38211 * 119.99713 * 0.41405 * 16 15 14 18 18 C 1.50706 * 120.00088 * 179.81051 * 17 16 15 19 19 O 1.42895 * 109.47147 * 269.73362 * 18 17 16 20 20 C 1.42901 * 113.99948 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47372 * 179.97438 * 20 19 18 22 22 C 1.34519 * 125.78677 * 89.71555 * 21 20 19 23 23 C 1.41385 * 106.83849 * 179.89224 * 22 21 20 24 24 C 1.34511 * 106.83993 * 0.37161 * 23 22 21 25 25 O 1.34298 * 125.79079 * 270.02791 * 21 20 19 26 26 C 1.38205 * 120.00091 * 89.99590 * 13 12 11 27 27 H 0.97004 * 119.99629 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00088 * 0.02562 * 11 9 7 29 29 H 1.08994 * 109.47636 * 60.00651 * 12 11 9 30 30 H 1.09004 * 109.47318 * 299.99805 * 12 11 9 31 31 H 1.07992 * 120.00454 * 359.97438 * 14 13 12 32 32 H 1.08001 * 120.00011 * 180.02562 * 15 14 13 33 33 H 1.08005 * 119.99966 * 180.23373 * 16 15 14 34 34 H 1.09001 * 109.46953 * 29.72877 * 18 17 16 35 35 H 1.09000 * 109.47318 * 149.72475 * 18 17 16 36 36 H 1.08995 * 109.47354 * 300.00131 * 20 19 18 37 37 H 1.09003 * 109.47182 * 59.99587 * 20 19 18 38 38 H 1.08004 * 126.57701 * 0.02562 * 22 21 20 39 39 H 1.08003 * 126.57737 * 180.16321 * 23 22 21 40 40 H 1.07998 * 125.78795 * 179.74771 * 24 23 22 41 41 H 1.08009 * 120.00262 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4384 2.6526 0.7001 6 1 3.5383 1.4400 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 0.0004 11 7 1.9488 -3.6477 -0.0005 12 6 1.2163 -4.9164 0.0000 13 6 2.1956 -6.0620 0.0005 14 6 2.6451 -6.5876 -1.1967 15 6 3.5435 -7.6378 -1.1962 16 6 3.9957 -8.1602 0.0014 17 6 3.5427 -7.6378 1.1981 18 6 4.0323 -8.2100 2.5035 19 8 3.1628 -9.2660 2.9166 20 6 3.5401 -9.8806 4.1503 21 6 2.5590 -10.9735 4.4879 22 6 2.6573 -12.2619 4.1139 23 6 1.5312 -12.9302 4.6471 24 6 0.8079 -12.0085 5.3080 25 8 1.4353 -10.8252 5.2082 26 6 2.6446 -6.5867 1.1976 27 1 -0.4850 0.8401 0.0004 28 1 2.9189 -3.6478 -0.0002 29 1 0.5893 -4.9744 -0.8897 30 1 0.5899 -4.9739 0.8903 31 1 2.2942 -6.1775 -2.1321 32 1 3.8950 -8.0481 -2.1313 33 1 4.7007 -8.9784 0.0017 34 1 5.0416 -8.6005 2.3732 35 1 4.0405 -7.4279 3.2627 36 1 4.5391 -10.3057 4.0539 37 1 3.5384 -9.1333 4.9440 38 1 3.4463 -12.7018 3.5219 39 1 1.2951 -13.9787 4.5409 40 1 -0.1201 -12.1894 5.8300 41 1 2.2935 -6.1760 2.1329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543960423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:24 Heat of formation + Delta-G solvation = -68.728465 kcal Electronic energy + Delta-G solvation = -24070.678746 eV Core-core repulsion = 20302.257120 eV Total energy + Delta-G solvation = -3768.421626 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.50259 -40.68556 -39.34001 -38.66000 -35.57330 -34.53806 -34.03394 -33.14707 -32.07246 -31.48247 -28.83196 -27.48206 -26.51357 -26.16351 -23.06631 -22.71771 -22.04530 -21.61384 -21.40750 -19.33074 -18.50829 -17.90185 -17.53682 -17.35509 -17.09660 -16.60201 -16.45292 -16.17506 -16.10563 -15.92255 -15.30952 -14.91840 -14.46893 -14.37990 -13.87741 -13.77001 -13.69900 -13.60714 -13.48090 -13.31804 -13.10040 -12.94947 -12.70985 -12.65859 -12.58184 -12.03974 -11.91330 -11.89212 -10.94509 -10.89338 -10.70406 -10.10450 -9.83520 -9.63282 -9.54080 -9.51013 -8.30235 -6.87790 0.22553 0.38739 0.69509 1.39892 1.41795 1.57374 1.63553 2.03786 2.24416 2.45071 2.59780 3.10820 3.36764 3.58111 3.69402 3.73283 3.92272 4.02533 4.09917 4.10777 4.17953 4.28502 4.31980 4.37471 4.39037 4.50157 4.54608 4.71064 4.77891 4.88017 4.98739 5.03586 5.10800 5.15231 5.30466 5.48767 5.57264 5.57796 5.67335 5.85055 6.01851 6.10867 6.16550 6.17180 6.24081 6.84677 7.51209 8.46035 8.65320 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002203 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.431352 B =12704.379186 C =13327.037449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.026 3.974 3 Si 1.002 2.998 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.571 4.571 8 H 0.088 0.912 9 C 0.536 3.464 10 O -0.634 6.634 11 N -0.748 5.748 12 C 0.176 3.824 13 C -0.107 4.107 14 C -0.105 4.105 15 C -0.119 4.119 16 C -0.092 4.092 17 C -0.101 4.101 18 C 0.106 3.894 19 O -0.402 6.402 20 C 0.139 3.861 21 C -0.046 4.046 22 C -0.192 4.192 23 C -0.230 4.230 24 C -0.039 4.039 25 O -0.197 6.197 26 C -0.095 4.095 27 H 0.275 0.725 28 H 0.394 0.606 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.125 0.875 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.167 0.833 39 H 0.172 0.828 40 H 0.234 0.766 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.062 -24.740 7.120 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.608 4.608 8 H 0.106 0.894 9 C 0.341 3.659 10 O -0.521 6.521 11 N -0.402 5.402 12 C 0.052 3.948 13 C -0.107 4.107 14 C -0.124 4.124 15 C -0.137 4.137 16 C -0.110 4.110 17 C -0.101 4.101 18 C 0.031 3.969 19 O -0.323 6.323 20 C 0.064 3.936 21 C -0.096 4.096 22 C -0.211 4.211 23 C -0.249 4.249 24 C -0.107 4.107 25 O -0.094 6.094 26 C -0.114 4.114 27 H 0.085 0.915 28 H 0.228 0.772 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.143 0.857 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.131 0.869 37 H 0.091 0.909 38 H 0.184 0.816 39 H 0.190 0.810 40 H 0.251 0.749 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.758 -24.453 7.146 28.058 hybrid contribution 0.076 0.710 0.085 0.719 sum 11.833 -23.743 7.232 27.496 Atomic orbital electron populations 1.70198 1.09611 1.29026 1.36338 1.27040 0.95579 1.05108 0.91170 0.84969 0.78715 0.74786 0.79491 1.18484 1.19745 1.17143 1.21416 0.94741 0.89898 1.54737 0.89361 1.18689 0.86851 0.84291 0.76093 1.90552 1.16275 1.87917 1.57398 1.45863 1.09167 1.04079 1.81140 1.19727 0.92869 0.82528 0.99688 1.19832 0.99152 0.97163 0.94591 1.21287 0.97280 0.96706 0.97125 1.21435 0.96824 0.95873 0.99533 1.21401 0.99390 0.99169 0.91079 1.19739 0.98544 0.96266 0.95562 1.21427 0.93654 0.89244 0.92595 1.88029 1.53900 1.50959 1.39408 1.20835 0.94108 0.91906 0.86767 1.22417 0.89819 0.96896 1.00441 1.22016 1.01893 0.93171 1.04039 1.22245 0.96733 1.02273 1.03658 1.24868 1.00272 0.81566 1.03957 1.84024 1.31600 1.35494 1.58314 1.21017 0.96577 0.96574 0.97206 0.91503 0.77240 0.93986 0.94595 0.85737 0.82784 0.82794 0.88870 0.91678 0.86902 0.90938 0.81574 0.81041 0.74941 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.41 11.83 21.84 0.26 -51.15 16 2 C 0.03 1.48 5.50 85.31 0.47 1.95 16 3 Si 1.00 41.46 29.56 68.60 2.03 43.49 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 7 C -0.57 -33.18 9.54 24.83 0.24 -32.94 16 8 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 9 C 0.54 32.35 7.75 86.36 0.67 33.01 16 10 O -0.63 -44.14 15.02 -4.31 -0.06 -44.20 16 11 N -0.75 -35.70 5.54 -471.14 -2.61 -38.31 16 12 C 0.18 7.51 5.80 85.64 0.50 8.01 16 13 C -0.11 -3.53 5.25 -19.86 -0.10 -3.63 16 14 C -0.11 -2.93 9.70 22.27 0.22 -2.71 16 15 C -0.12 -2.53 10.05 22.27 0.22 -2.30 16 16 C -0.09 -1.84 9.70 22.27 0.22 -1.63 16 17 C -0.10 -2.39 5.51 -19.87 -0.11 -2.50 16 18 C 0.11 1.94 6.06 71.24 0.43 2.37 16 19 O -0.40 -8.93 10.31 -148.98 -1.54 -10.47 16 20 C 0.14 2.30 6.47 71.24 0.46 2.76 16 21 C -0.05 -0.95 6.95 24.83 0.17 -0.78 16 22 C -0.19 -3.36 10.81 22.19 0.24 -3.12 16 23 C -0.23 -3.59 10.91 22.19 0.24 -3.35 16 24 C -0.04 -0.64 12.09 66.97 0.81 0.17 16 25 O -0.20 -4.49 10.65 -2.47 -0.03 -4.52 16 26 C -0.09 -2.84 9.36 22.27 0.21 -2.63 16 27 H 0.28 15.51 8.29 -92.71 -0.77 14.74 16 28 H 0.39 16.51 8.44 -92.70 -0.78 15.73 16 29 H 0.04 1.89 8.09 -2.39 -0.02 1.87 16 30 H 0.04 1.65 8.09 -2.38 -0.02 1.63 16 31 H 0.12 3.38 8.06 -2.91 -0.02 3.35 16 32 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 35 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 36 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.23 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.11 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -84.58 365.28 3.19 -81.39 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.27 Total: 31.11 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 4.88 Total: -7.33 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -2.35 Total: -89.46 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -1.63 Total: -59.19 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -84.58 3.19 -81.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543960423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.661 kcal (2) G-P(sol) polarization free energy of solvation -84.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds