Wall clock time and date at job start Tue Mar 31 2020 11:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00274 * 2 1 4 4 H 1.48493 * 109.47187 * 270.00376 * 3 2 1 5 5 H 1.48504 * 109.47040 * 30.00182 * 3 2 1 6 6 H 1.48497 * 109.47080 * 150.00336 * 3 2 1 7 7 C 1.37876 * 119.99518 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00254 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.46256 * 175.00186 * 10 9 7 12 12 C 1.53187 * 109.31462 * 181.38608 * 11 10 9 13 13 N 1.46923 * 108.77314 * 305.36008 * 12 11 10 14 14 C 1.34778 * 120.63258 * 233.58223 * 13 12 11 15 15 O 1.21282 * 119.99782 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00071 * 180.02562 * 14 13 12 17 17 H 1.08996 * 110.36028 * 37.83822 * 16 14 13 18 18 C 1.54159 * 110.31887 * 275.66843 * 16 14 13 19 19 C 1.53878 * 108.70185 * 213.19032 * 18 16 14 20 20 C 1.55045 * 106.62696 * 47.17889 * 19 18 16 21 21 S 1.82920 * 110.31759 * 160.00418 * 16 14 13 22 22 O 1.42103 * 109.35097 * 234.42743 * 21 16 14 23 23 O 1.42104 * 109.35329 * 7.49284 * 21 16 14 24 24 C 1.46925 * 118.73881 * 53.86414 * 13 12 11 25 25 C 1.53043 * 109.45916 * 295.06695 * 10 9 7 26 26 H 0.97001 * 119.99634 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47328 * 60.00606 * 9 7 2 28 28 H 1.08998 * 109.47469 * 299.99950 * 9 7 2 29 29 H 1.09001 * 109.45887 * 55.02498 * 10 9 7 30 30 H 1.09000 * 109.49706 * 61.43099 * 11 10 9 31 31 H 1.09001 * 109.49521 * 301.33667 * 11 10 9 32 32 H 1.09008 * 109.58709 * 185.57638 * 12 11 10 33 33 H 1.08996 * 109.70620 * 65.21822 * 12 11 10 34 34 H 1.09005 * 109.64648 * 333.03994 * 18 16 14 35 35 H 1.08996 * 109.64785 * 93.33704 * 18 16 14 36 36 H 1.09002 * 110.02573 * 287.88583 * 19 18 16 37 37 H 1.09005 * 110.02978 * 166.47325 * 19 18 16 38 38 H 1.08999 * 110.79230 * 199.29443 * 20 19 18 39 39 H 1.09004 * 110.95511 * 75.90802 * 20 19 18 40 40 H 1.09009 * 109.58764 * 65.92261 * 24 13 12 41 41 H 1.09004 * 109.58932 * 186.34545 * 24 13 12 42 42 H 1.08995 * 109.49778 * 298.56543 * 25 10 9 43 43 H 1.08998 * 109.49492 * 58.66517 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4839 -4.9837 0.1252 12 6 2.4842 -6.1434 0.1597 13 7 3.3502 -6.0562 -1.0240 14 6 3.4921 -7.1114 -1.8503 15 8 2.9015 -8.1454 -1.6203 16 6 4.3845 -7.0064 -3.0602 17 1 5.2728 -6.4196 -2.8264 18 6 3.6179 -6.3716 -4.2374 19 6 4.1314 -6.9882 -5.5504 20 6 4.1673 -8.5232 -5.3354 21 16 4.8601 -8.6731 -3.6451 22 8 6.2764 -8.7585 -3.7226 23 8 4.1306 -9.6529 -2.9192 24 6 4.0635 -4.7988 -1.2863 25 6 3.0411 -3.6524 -1.3076 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.9289 -3.5553 0.8416 30 1 0.8181 -5.1028 -0.7296 31 1 0.8988 -4.9805 1.0449 32 1 1.9456 -7.0910 0.1494 33 1 3.0916 -6.0781 1.0624 34 1 2.5517 -6.5716 -4.1309 35 1 3.7876 -5.2949 -4.2472 36 1 5.1330 -6.6184 -5.7698 37 1 3.4545 -6.7416 -6.3685 38 1 4.8209 -9.0010 -6.0652 39 1 3.1640 -8.9469 -5.3812 40 1 4.7968 -4.6235 -0.4990 41 1 4.5675 -4.8589 -2.2510 42 1 2.3608 -3.7840 -2.1489 43 1 3.5645 -2.7015 -1.4077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582915159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:46 Heat of formation + Delta-G solvation = -139.549374 kcal Electronic energy + Delta-G solvation = -25305.864819 eV Core-core repulsion = 21669.816119 eV Total energy + Delta-G solvation = -3636.048700 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.41734 -38.88097 -38.03009 -37.24121 -36.77465 -35.70016 -34.02984 -32.44347 -31.03090 -29.71757 -26.96193 -26.03848 -24.19058 -23.57875 -22.51508 -21.55212 -20.26724 -19.48976 -18.78713 -18.38518 -17.78324 -17.21387 -16.83777 -16.51316 -16.28495 -16.17352 -15.32642 -15.22987 -15.01532 -14.92854 -14.69807 -14.41287 -14.15604 -13.93042 -13.64146 -13.43641 -13.17811 -13.04452 -12.96850 -12.93345 -12.79280 -12.67665 -12.49457 -12.31196 -12.14338 -11.97056 -11.75592 -11.64130 -11.34992 -11.20486 -11.10132 -10.84058 -10.82303 -10.50428 -9.65726 -8.14853 -6.24334 -0.98772 1.39380 1.43116 1.44373 1.54514 1.56292 1.86495 2.44210 2.67132 2.91263 3.19366 3.38634 3.42569 3.72222 3.79694 3.87921 4.03275 4.05209 4.08950 4.18985 4.20417 4.40935 4.54302 4.57518 4.67426 4.69860 4.80339 4.88846 4.95673 5.00800 5.04583 5.10970 5.14351 5.30247 5.33144 5.40992 5.54402 5.59608 5.83291 5.91406 6.28377 6.32297 6.92957 6.98140 7.44805 8.97087 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.003202 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.566701 B = 8741.230055 C = 9276.751931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.003 4.003 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.068 0.932 9 C 0.033 3.967 10 C -0.075 4.075 11 C -0.120 4.120 12 C 0.115 3.885 13 N -0.598 5.598 14 C 0.526 3.474 15 O -0.551 6.551 16 C -0.592 4.592 17 H 0.187 0.813 18 C -0.106 4.106 19 C -0.115 4.115 20 C -0.559 4.559 21 S 2.390 3.610 22 O -0.968 6.968 23 O -0.955 6.955 24 C 0.102 3.898 25 C -0.112 4.112 26 H 0.260 0.740 27 H -0.013 1.013 28 H -0.018 1.018 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.165 0.835 39 H 0.150 0.850 40 H 0.084 0.916 41 H 0.117 0.883 42 H 0.054 0.946 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.381 -12.815 -12.926 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.086 0.914 9 C -0.004 4.004 10 C -0.094 4.094 11 C -0.158 4.158 12 C -0.007 4.007 13 N -0.330 5.330 14 C 0.313 3.687 15 O -0.429 6.429 16 C -0.702 4.702 17 H 0.204 0.796 18 C -0.144 4.144 19 C -0.153 4.153 20 C -0.693 4.693 21 S 2.575 3.425 22 O -0.965 6.965 23 O -0.952 6.952 24 C -0.020 4.020 25 C -0.150 4.150 26 H 0.069 0.931 27 H 0.006 0.994 28 H 0.001 0.999 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.183 0.817 39 H 0.168 0.832 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.073 0.927 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.429 -13.989 -12.281 21.843 hybrid contribution -0.714 1.712 0.261 1.873 sum 10.715 -12.277 -12.019 20.248 Atomic orbital electron populations 1.70115 1.07937 1.27460 1.52382 1.25951 0.95576 1.03239 0.95216 0.85533 0.78748 0.78864 0.78420 1.19740 1.21677 1.18504 1.21666 0.93647 0.91724 1.49255 0.91352 1.19014 0.94036 0.93148 0.94233 1.21062 0.97070 0.93281 0.97989 1.21894 0.97683 0.94439 1.01819 1.21627 0.92557 0.99140 0.87396 1.48166 1.46068 1.13260 1.25554 1.19751 0.82264 0.83405 0.83302 1.90930 1.48557 1.29206 1.74191 1.30717 1.09625 1.27057 1.02789 0.79588 1.22092 0.99991 1.03810 0.88539 1.22365 1.06348 0.88551 0.98062 1.30517 1.14535 1.06244 1.18036 1.09134 0.75135 0.77153 0.81108 1.93573 1.29439 1.86000 1.87478 1.93638 1.73684 1.56355 1.71515 1.22244 0.94297 0.81363 1.04074 1.21857 0.97739 0.98308 0.97094 0.93110 0.99448 0.99915 0.92131 0.93146 0.91254 0.90056 0.90057 0.90201 0.86059 0.86845 0.85547 0.81723 0.83178 0.89780 0.86466 0.92687 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.64 13.29 21.45 0.28 -55.35 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.96 42.09 29.54 68.60 2.03 44.12 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.52 -27.49 8.39 25.60 0.21 -27.28 16 8 H 0.07 3.34 7.06 -2.91 -0.02 3.32 16 9 C 0.03 1.61 4.45 29.85 0.13 1.74 16 10 C -0.08 -2.73 2.10 -10.77 -0.02 -2.76 16 11 C -0.12 -3.88 5.36 30.67 0.16 -3.72 16 12 C 0.12 3.24 6.43 86.36 0.56 3.80 16 13 N -0.60 -15.39 2.97 -818.06 -2.43 -17.82 16 14 C 0.53 13.98 6.78 87.66 0.59 14.57 16 15 O -0.55 -19.36 13.64 19.69 0.27 -19.09 16 16 C -0.59 -9.92 2.62 30.24 0.08 -9.85 16 17 H 0.19 2.00 6.70 -2.39 -0.02 1.98 16 18 C -0.11 -1.14 5.76 31.28 0.18 -0.96 16 19 C -0.11 -0.62 6.48 31.59 0.20 -0.41 16 20 C -0.56 -4.84 7.31 72.68 0.53 -4.31 16 21 S 2.39 46.93 5.92 -56.49 -0.33 46.59 16 22 O -0.97 -23.52 18.15 -127.47 -2.31 -25.83 16 23 O -0.95 -29.68 15.41 -118.56 -1.83 -31.50 16 24 C 0.10 2.17 6.26 86.51 0.54 2.72 16 25 C -0.11 -3.30 5.21 30.82 0.16 -3.14 16 26 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 27 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 28 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 2.44 7.01 -2.38 -0.02 2.43 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 1.09 7.85 -2.38 -0.02 1.07 16 35 H 0.12 0.92 7.57 -2.39 -0.02 0.90 16 36 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.13 0.25 8.14 -2.38 -0.02 0.23 16 38 H 0.16 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.12 1.63 4.99 -2.39 -0.01 1.62 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 43 H 0.08 2.46 6.91 -2.39 -0.02 2.44 16 Total: -1.00 -82.15 346.90 0.48 -81.68 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.00 Total: 6.49 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 3.80 Total: -29.28 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -2.14 Total: -73.17 kcal Atomic # 8 Polarization: -72.55 SS G_CDS: -3.87 Total: -76.42 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 46.93 SS G_CDS: -0.33 Total: 46.59 kcal Total: -82.15 0.48 -81.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582915159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.874 kcal (2) G-P(sol) polarization free energy of solvation -82.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds