Wall clock time and date at job start Tue Mar 31 2020 10:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00045 * 2 1 4 4 H 1.48497 * 109.47279 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47136 * 299.99811 * 3 2 1 6 6 H 1.48501 * 109.47351 * 59.99816 * 3 2 1 7 7 C 1.37884 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46979 * 180.02562 * 9 7 2 11 11 S 1.81392 * 109.47186 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54654 * 68.37090 * 11 10 9 13 13 O 1.42105 * 110.54231 * 291.62089 * 11 10 9 14 14 N 1.65596 * 104.45069 * 179.97438 * 11 10 9 15 15 C 1.47216 * 135.97151 * 270.04824 * 14 11 10 16 16 C 1.52913 * 87.78682 * 153.50970 * 15 14 11 17 17 C 1.53656 * 115.30358 * 140.74757 * 16 15 14 18 18 C 1.55488 * 101.96589 * 111.35546 * 17 16 15 19 19 C 1.55011 * 101.04625 * 33.48708 * 18 17 16 20 20 O 1.42391 * 116.11352 * 269.31200 * 16 15 14 21 21 C 1.47208 * 135.97860 * 89.99633 * 14 11 10 22 22 H 1.09000 * 113.49982 * 321.29360 * 21 14 11 23 23 C 1.53006 * 113.50009 * 91.76149 * 21 14 11 24 24 C 1.53000 * 117.49776 * 279.49834 * 23 21 14 25 25 C 1.52997 * 117.49537 * 348.12289 * 23 21 14 26 26 H 0.96997 * 119.99586 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47908 * 59.99719 * 9 7 2 28 28 H 1.09000 * 109.47065 * 299.99550 * 9 7 2 29 29 H 1.09002 * 109.46940 * 59.99257 * 10 9 7 30 30 H 1.09000 * 109.46760 * 299.99620 * 10 9 7 31 31 H 1.08996 * 113.50322 * 268.23781 * 15 14 11 32 32 H 1.09006 * 113.49863 * 38.77944 * 15 14 11 33 33 H 1.09004 * 110.93033 * 229.52413 * 17 16 15 34 34 H 1.08996 * 110.93188 * 353.18703 * 17 16 15 35 35 H 1.09003 * 111.10402 * 275.54153 * 18 17 16 36 36 H 1.09000 * 111.13919 * 151.44916 * 18 17 16 37 37 H 1.09001 * 110.30516 * 205.04507 * 19 18 17 38 38 H 1.09004 * 110.38147 * 82.94325 * 19 18 17 39 39 H 1.09002 * 115.56020 * 133.80417 * 23 21 14 40 40 H 1.08990 * 117.49990 * 359.97438 * 24 23 21 41 41 H 1.09004 * 117.49237 * 214.97568 * 24 23 21 42 42 H 1.08999 * 117.49685 * 145.02116 * 25 23 21 43 43 H 1.08997 * 117.50044 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 16 1.3384 -5.2330 0.0026 12 8 0.6648 -5.4206 -1.2345 13 8 0.6639 -5.4188 1.2395 14 7 2.5205 -6.3927 0.0032 15 6 3.2767 -7.1339 -1.0195 16 6 4.4015 -7.2833 0.0055 17 6 5.1116 -8.6460 0.0073 18 6 6.5216 -8.2754 -0.5333 19 6 6.6997 -6.8515 0.0529 20 8 5.3895 -6.2580 0.0058 21 6 3.2761 -7.1334 1.0266 22 1 3.5500 -6.5260 1.8893 23 6 2.6285 -8.4626 1.4204 24 6 1.4704 -8.4157 2.4191 25 6 1.1972 -8.7193 0.9446 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5572 -0.8895 28 1 0.6241 -2.5567 0.8903 29 1 2.8714 -3.6039 0.8922 30 1 2.8726 -3.6048 -0.8878 31 1 2.8156 -8.0808 -1.2999 32 1 3.5522 -6.5264 -1.8817 33 1 5.1758 -9.0503 1.0176 34 1 4.6105 -9.3471 -0.6601 35 1 6.5312 -8.2553 -1.6231 36 1 7.2813 -8.9560 -0.1490 37 1 7.3975 -6.2765 -0.5558 38 1 7.0533 -6.9064 1.0825 39 1 3.3029 -9.3174 1.4713 40 1 1.1702 -7.4381 2.7960 41 1 1.3829 -9.2398 3.1272 42 1 0.9299 -9.7430 0.6827 43 1 0.7168 -7.9412 0.3515 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590177241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:26 Heat of formation + Delta-G solvation = -78.116268 kcal Electronic energy + Delta-G solvation = -25620.288858 eV Core-core repulsion = 21986.904098 eV Total energy + Delta-G solvation = -3633.384760 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.05679 -38.83277 -38.20730 -37.10164 -36.44666 -35.97018 -33.20167 -33.07145 -30.16330 -27.67852 -27.59958 -26.05895 -23.59583 -23.31346 -22.91648 -22.17521 -20.60481 -19.51628 -18.99314 -18.33579 -17.72942 -17.37569 -16.99402 -16.80801 -16.56538 -16.22097 -15.98369 -15.42294 -15.16685 -14.87423 -14.52791 -14.28355 -13.99027 -13.79793 -13.61832 -13.33654 -13.24250 -13.13388 -12.99797 -12.85891 -12.68373 -12.48510 -12.37661 -12.34954 -12.17189 -12.08103 -11.86271 -11.66779 -11.42299 -11.31774 -11.11612 -11.02575 -10.70909 -10.27145 -10.10194 -8.31381 -6.46436 -0.83199 1.36838 1.38425 1.52191 1.62822 2.34285 2.60479 2.76915 2.81422 3.01180 3.03054 3.29178 3.56837 3.73892 3.85702 3.92213 3.94174 4.04198 4.12490 4.18654 4.23307 4.40835 4.46524 4.61064 4.63963 4.66268 4.69299 4.81931 4.87354 4.93320 4.93995 5.04163 5.07669 5.16507 5.17469 5.17835 5.26838 5.33810 5.36383 5.55038 5.61961 5.99811 6.18935 6.66221 7.23872 8.81469 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.004251 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.180563 B = 6584.946538 C = 7769.506007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.978 3.022 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.023 3.977 10 C -0.583 4.583 11 S 2.636 3.364 12 O -0.995 6.995 13 O -0.985 6.985 14 N -1.040 6.040 15 C 0.119 3.881 16 C 0.092 3.908 17 C -0.130 4.130 18 C -0.147 4.147 19 C 0.035 3.965 20 O -0.378 6.378 21 C 0.169 3.831 22 H 0.083 0.917 23 C -0.140 4.140 24 C -0.184 4.184 25 C -0.181 4.181 26 H 0.269 0.731 27 H 0.005 0.995 28 H 0.006 0.994 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.164 0.836 40 H 0.070 0.930 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.030 -23.801 0.996 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.090 0.910 9 C -0.016 4.016 10 C -0.715 4.715 11 S 2.737 3.263 12 O -0.986 6.986 13 O -0.975 6.975 14 N -0.879 5.879 15 C -0.006 4.006 16 C 0.049 3.951 17 C -0.168 4.168 18 C -0.184 4.184 19 C -0.041 4.041 20 O -0.297 6.297 21 C 0.063 3.937 22 H 0.101 0.899 23 C -0.159 4.159 24 C -0.221 4.221 25 C -0.218 4.218 26 H 0.078 0.922 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.136 0.864 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.181 0.819 40 H 0.089 0.911 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.696 -23.459 0.975 27.699 hybrid contribution 0.051 1.809 -0.012 1.810 sum 14.747 -21.650 0.962 26.213 Atomic orbital electron populations 1.70113 1.08103 1.28446 1.50634 1.26162 0.95932 1.03984 0.94065 0.85202 0.78977 0.77593 0.78098 1.18139 1.19934 1.19959 1.21494 0.93823 0.90768 1.51979 0.91010 1.18818 0.93448 0.93130 0.96181 1.30352 1.12672 1.17050 1.11443 1.03938 0.73793 0.75772 0.72807 1.93477 1.72353 1.85777 1.46951 1.93485 1.72064 1.85578 1.46403 1.59963 1.57462 1.51685 1.18761 1.23199 0.88185 0.96986 0.92223 1.22812 0.88245 0.89600 0.94400 1.23027 0.95086 0.94055 1.04668 1.23290 0.97542 0.95665 1.01920 1.23790 0.83810 0.94886 1.01592 1.88372 1.15766 1.31439 1.94085 1.22001 0.88027 0.91338 0.92349 0.89856 1.22612 0.91422 0.97825 1.04028 1.23097 1.02681 1.03324 0.93022 1.22916 0.98563 1.02681 0.97653 0.92203 0.97657 0.97556 0.84996 0.84988 0.86403 0.90406 0.87647 0.87125 0.89944 0.87418 0.89230 0.91059 0.81856 0.91091 0.85912 0.85791 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.78 13.29 21.45 0.28 -58.49 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 3 Si 0.98 45.00 29.54 68.60 2.03 47.03 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -32.08 9.11 25.60 0.23 -31.85 16 8 H 0.07 4.00 7.74 -2.91 -0.02 3.97 16 9 C 0.02 1.32 4.98 29.85 0.15 1.47 16 10 C -0.58 -25.83 6.12 71.98 0.44 -25.39 16 11 S 2.64 108.83 5.33 -56.49 -0.30 108.53 16 12 O -0.99 -46.52 18.07 -127.65 -2.31 -48.82 16 13 O -0.98 -45.04 17.41 -127.65 -2.22 -47.26 16 14 N -1.04 -31.28 2.75 -526.82 -1.45 -32.73 16 15 C 0.12 2.64 7.74 83.45 0.65 3.29 16 16 C 0.09 1.70 1.69 -10.70 -0.02 1.68 16 17 C -0.13 -1.11 5.17 31.67 0.16 -0.94 16 18 C -0.15 -1.13 7.16 32.14 0.23 -0.90 16 19 C 0.03 0.48 7.79 72.67 0.57 1.04 16 20 O -0.38 -8.53 11.17 -148.98 -1.66 -10.19 16 21 C 0.17 3.90 4.54 41.99 0.19 4.09 16 22 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 23 C -0.14 -2.48 5.00 -10.79 -0.05 -2.53 16 24 C -0.18 -4.11 10.25 30.60 0.31 -3.79 16 25 C -0.18 -4.05 9.58 30.60 0.29 -3.75 16 26 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.13 5.41 8.14 -2.39 -0.02 5.39 16 30 H 0.13 5.40 8.14 -2.39 -0.02 5.39 16 31 H 0.12 2.02 7.63 -2.39 -0.02 2.00 16 32 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.11 0.55 7.06 -2.38 -0.02 0.53 16 34 H 0.11 0.55 7.82 -2.39 -0.02 0.53 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.11 0.35 8.14 -2.39 -0.02 0.34 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 39 H 0.16 1.46 6.30 -2.39 -0.02 1.45 16 40 H 0.07 2.14 7.63 -2.39 -0.02 2.12 16 41 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 1.60 6.51 -2.39 -0.02 1.59 16 Total: -1.00 -82.46 360.15 -1.02 -83.49 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.99 Total: 15.76 kcal Atomic # 6 Polarization: -60.92 SS G_CDS: 3.62 Total: -57.30 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -1.16 Total: -91.22 kcal Atomic # 8 Polarization: -100.09 SS G_CDS: -6.19 Total: -106.28 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 108.83 SS G_CDS: -0.30 Total: 108.53 kcal Total: -82.46 -1.02 -83.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590177241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.369 kcal (2) G-P(sol) polarization free energy of solvation -82.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds