Wall clock time and date at job start Tue Mar 31 2020 10:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00253 * 2 1 4 4 H 1.48497 * 109.47282 * 239.99890 * 3 2 1 5 5 H 1.48503 * 109.47275 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47492 * 120.00011 * 3 2 1 7 7 C 1.37879 * 119.99552 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99735 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00214 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.63909 * 56.85594 * 9 7 2 11 11 C 1.55152 * 110.87044 * 293.60979 * 9 7 2 12 12 C 1.55134 * 101.48475 * 205.89581 * 11 9 7 13 13 N 1.47426 * 104.71798 * 37.29849 * 12 11 9 14 14 C 1.34775 * 125.64423 * 155.81747 * 13 12 11 15 15 O 1.21725 * 120.00157 * 185.72528 * 14 13 12 16 16 C 1.46242 * 120.00492 * 5.73165 * 14 13 12 17 17 C 1.35587 * 120.14875 * 187.85666 * 16 14 13 18 18 C 1.47114 * 117.87174 * 180.93931 * 17 16 14 19 19 C 1.39444 * 121.48189 * 196.14505 * 18 17 16 20 20 C 1.37949 * 119.50982 * 179.91612 * 19 18 17 21 21 C 1.38575 * 120.35100 * 359.97438 * 20 19 18 22 22 C 1.38253 * 120.63514 * 0.02739 * 21 20 19 23 23 C 1.38351 * 119.85134 * 359.97438 * 22 21 20 24 24 O 1.35569 * 121.30699 * 179.97438 * 23 22 21 25 25 C 1.42805 * 117.28436 * 146.04632 * 24 23 22 26 26 C 1.47018 * 108.70330 * 335.54937 * 13 12 11 27 27 H 0.96996 * 119.99422 * 0.02562 * 1 2 3 28 28 H 0.96696 * 114.00394 * 303.14565 * 10 9 7 29 29 H 1.08995 * 111.00826 * 324.13647 * 11 9 7 30 30 H 1.09006 * 111.00580 * 87.99252 * 11 9 7 31 31 H 1.08991 * 110.49885 * 278.45404 * 12 11 9 32 32 H 1.08997 * 110.34370 * 156.06019 * 12 11 9 33 33 H 1.08001 * 121.06506 * 0.91944 * 17 16 14 34 34 H 1.08001 * 120.24326 * 359.91124 * 19 18 17 35 35 H 1.08003 * 119.82738 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.68371 * 180.02562 * 21 20 19 37 37 H 1.07994 * 120.07332 * 180.02562 * 22 21 20 38 38 H 1.09006 * 109.30019 * 168.62158 * 25 24 23 39 39 H 1.09007 * 109.30001 * 287.99262 * 25 24 23 40 40 H 1.08998 * 109.88084 * 120.70919 * 26 13 12 41 41 H 1.09003 * 109.88623 * 241.71436 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.3663 -2.5701 -1.1195 11 6 0.4712 -2.6873 1.3286 12 6 0.3729 -4.2332 1.4129 13 7 1.6625 -4.7196 0.8897 14 6 2.2269 -5.9099 1.1743 15 8 3.3454 -6.1659 0.7681 16 6 1.4954 -6.8942 1.9711 17 6 2.1147 -8.0240 2.3938 18 6 1.3257 -8.9898 3.1742 19 6 1.9380 -9.9948 3.9222 20 6 1.1587 -10.8778 4.6405 21 6 -0.2226 -10.7687 4.6207 22 6 -0.8404 -9.7763 3.8826 23 6 -0.0756 -8.8813 3.1558 24 8 -0.6504 -7.8973 2.4216 25 6 0.0504 -6.6566 2.3270 26 6 2.2279 -3.6938 0.0012 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2682 -1.8419 -1.1663 29 1 1.0310 -2.2816 2.1712 30 1 -0.5198 -2.2374 1.2670 31 1 -0.4485 -4.5976 0.7960 32 1 0.2401 -4.5486 2.4477 33 1 3.1537 -8.2090 2.1647 34 1 3.0144 -10.0812 3.9390 35 1 1.6276 -11.6584 5.2212 36 1 -0.8223 -11.4656 5.1874 37 1 -1.9176 -9.6993 3.8741 38 1 -0.4128 -6.0390 1.5575 39 1 -0.0059 -6.1372 3.2837 40 1 3.2016 -3.3762 0.3740 41 1 2.3298 -4.0928 -1.0081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592837990.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:13 Heat of formation + Delta-G solvation = -78.337889 kcal Electronic energy + Delta-G solvation = -26008.625932 eV Core-core repulsion = 22239.787610 eV Total energy + Delta-G solvation = -3768.838322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.05231 -40.92920 -39.07273 -38.46432 -36.29804 -35.21944 -34.16023 -32.27968 -31.42830 -31.24489 -30.03028 -27.39452 -27.06378 -25.28759 -23.86955 -23.52709 -21.85328 -21.08902 -19.88419 -19.26543 -19.07201 -17.93115 -17.53056 -17.19447 -16.90441 -16.79629 -16.28637 -16.01997 -15.84620 -15.40682 -15.18147 -14.97160 -14.68382 -14.36233 -14.07091 -13.97191 -13.70689 -13.53581 -13.26995 -13.17151 -13.00047 -12.73591 -12.64215 -12.36660 -12.34590 -12.24604 -12.01711 -11.76122 -11.35652 -11.20482 -11.06450 -10.64464 -10.16238 -9.84552 -9.63791 -9.00279 -8.27121 -6.41056 -0.65670 0.36853 0.80470 1.42553 1.44601 1.51473 1.87759 1.93571 2.30738 2.38985 2.80239 2.98067 3.25565 3.40908 3.62382 3.74341 3.82986 3.96398 4.02287 4.16793 4.18826 4.24318 4.32666 4.39565 4.40595 4.50979 4.56605 4.66375 4.79062 4.85267 4.94153 5.02835 5.10762 5.18853 5.34228 5.41978 5.45149 5.48474 5.50660 5.74286 5.76358 6.03022 6.27738 6.43628 6.61548 6.93777 7.29624 7.43278 8.79222 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.030778 B = 0.002958 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.529905 B = 9464.115827 C = 9868.009736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.038 3.962 3 Si 0.960 3.040 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.564 4.564 8 H 0.052 0.948 9 C 0.237 3.763 10 O -0.594 6.594 11 C -0.128 4.128 12 C 0.091 3.909 13 N -0.606 5.606 14 C 0.567 3.433 15 O -0.590 6.590 16 C -0.241 4.241 17 C 0.005 3.995 18 C -0.172 4.172 19 C -0.062 4.062 20 C -0.150 4.150 21 C -0.065 4.065 22 C -0.156 4.156 23 C 0.114 3.886 24 O -0.320 6.320 25 C 0.098 3.902 26 C 0.129 3.871 27 H 0.274 0.726 28 H 0.384 0.616 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.148 0.852 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 -18.375 12.375 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.164 4.164 3 Si 0.786 3.214 4 H -0.204 1.204 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.602 4.602 8 H 0.071 0.929 9 C 0.197 3.803 10 O -0.404 6.404 11 C -0.167 4.167 12 C -0.030 4.030 13 N -0.337 5.337 14 C 0.360 3.640 15 O -0.473 6.473 16 C -0.244 4.244 17 C -0.015 4.015 18 C -0.173 4.173 19 C -0.080 4.080 20 C -0.167 4.167 21 C -0.083 4.083 22 C -0.174 4.174 23 C 0.069 3.931 24 O -0.234 6.234 25 C 0.025 3.975 26 C 0.006 3.994 27 H 0.083 0.917 28 H 0.235 0.765 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.166 0.834 38 H 0.151 0.849 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.371 -18.955 11.947 22.658 hybrid contribution 0.623 1.965 -0.491 2.119 sum -2.748 -16.990 11.456 20.675 Atomic orbital electron populations 1.69610 1.06504 1.28648 1.49789 1.25581 0.95906 1.01930 0.92934 0.85580 0.78485 0.78813 0.78545 1.20399 1.20157 1.19862 1.21708 0.93490 0.91723 1.53319 0.92932 1.19557 0.86503 0.90417 0.83821 1.86084 1.51543 1.53123 1.49687 1.23197 1.01915 0.92362 0.99216 1.23057 0.84527 0.95606 0.99834 1.48523 1.22919 1.15857 1.46418 1.17909 0.85139 0.80830 0.80155 1.90751 1.20762 1.79117 1.56704 1.22268 0.97926 0.97950 1.06246 1.22502 0.99195 0.90178 0.89577 1.19276 0.92587 1.00735 1.04655 1.21442 1.01374 0.91687 0.93496 1.21507 0.93916 1.00358 1.00945 1.21620 0.95223 0.95754 0.95657 1.20910 1.01230 0.97262 0.98022 1.19604 0.91009 0.90613 0.91897 1.86000 1.47421 1.22527 1.67458 1.22599 0.87609 0.83426 1.03905 1.21860 0.97145 0.87971 0.92446 0.91661 0.76465 0.91963 0.89940 0.89911 0.87863 0.83645 0.83325 0.82191 0.81645 0.83383 0.84899 0.89052 0.92026 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.46 10.71 21.45 0.23 -45.23 16 2 C 0.04 1.92 5.28 84.65 0.45 2.36 16 3 Si 0.96 40.99 29.54 68.60 2.03 43.02 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.56 -29.67 8.22 25.60 0.21 -29.46 16 8 H 0.05 2.81 7.53 -2.91 -0.02 2.79 16 9 C 0.24 11.47 0.85 -10.35 -0.01 11.46 16 10 O -0.59 -30.01 13.09 -148.98 -1.95 -31.96 16 11 C -0.13 -5.33 5.69 32.06 0.18 -5.15 16 12 C 0.09 3.09 4.94 86.93 0.43 3.52 16 13 N -0.61 -24.26 3.32 -816.57 -2.71 -26.98 16 14 C 0.57 22.40 7.74 86.32 0.67 23.06 16 15 O -0.59 -27.04 16.66 -4.43 -0.07 -27.11 16 16 C -0.24 -7.58 5.93 -18.39 -0.11 -7.69 16 17 C 0.01 0.15 9.61 23.99 0.23 0.38 16 18 C -0.17 -4.04 5.80 -20.09 -0.12 -4.16 16 19 C -0.06 -1.05 9.86 22.49 0.22 -0.83 16 20 C -0.15 -1.82 10.03 22.28 0.22 -1.60 16 21 C -0.06 -0.78 10.02 22.35 0.22 -0.56 16 22 C -0.16 -2.71 10.01 22.30 0.22 -2.49 16 23 C 0.11 2.72 6.47 22.86 0.15 2.87 16 24 O -0.32 -8.60 10.40 -88.76 -0.92 -9.53 16 25 C 0.10 2.60 5.06 71.24 0.36 2.96 16 26 C 0.13 5.97 6.22 86.73 0.54 6.51 16 27 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 28 H 0.38 19.47 6.98 -74.06 -0.52 18.96 16 29 H 0.06 2.65 8.04 -2.39 -0.02 2.63 16 30 H 0.08 3.51 7.78 -2.38 -0.02 3.49 16 31 H 0.08 2.66 6.90 -2.39 -0.02 2.64 16 32 H 0.10 2.81 5.51 -2.39 -0.01 2.80 16 33 H 0.15 4.01 7.63 -2.91 -0.02 3.98 16 34 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 36 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 37 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.13 3.49 4.55 -2.38 -0.01 3.48 16 39 H 0.09 2.07 7.23 -2.38 -0.02 2.05 16 40 H 0.06 2.96 7.63 -2.39 -0.02 2.94 16 41 H 0.05 2.24 8.07 -2.39 -0.02 2.22 16 Total: -1.00 -64.46 335.16 1.03 -63.43 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.56 Total: 33.16 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 3.87 Total: 1.20 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -2.49 Total: -72.21 kcal Atomic # 8 Polarization: -65.65 SS G_CDS: -2.95 Total: -68.60 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -64.46 1.03 -63.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837990.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.913 kcal (2) G-P(sol) polarization free energy of solvation -64.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds