Wall clock time and date at job start Tue Mar 31 2020 10:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42897 * 110.63957 * 61.40714 * 9 7 2 11 11 C 1.55160 * 110.71656 * 298.26718 * 9 7 2 12 12 C 1.54913 * 101.57624 * 206.13323 * 11 9 7 13 13 N 1.47423 * 104.83089 * 37.01185 * 12 11 9 14 14 C 1.34780 * 125.64675 * 155.83077 * 13 12 11 15 15 O 1.21284 * 120.00326 * 180.02562 * 14 13 12 16 16 C 1.50703 * 120.00093 * 0.02957 * 14 13 12 17 17 C 1.50701 * 109.47210 * 179.97438 * 16 14 13 18 18 C 1.33993 * 126.90601 * 264.68047 * 17 16 14 19 19 O 1.34453 * 110.15096 * 179.88780 * 18 17 16 20 20 C 1.34803 * 110.88831 * 0.39394 * 19 18 17 21 21 C 1.38953 * 133.49349 * 179.78791 * 20 19 18 22 22 C 1.37842 * 119.81624 * 179.97438 * 21 20 19 23 23 C 1.38744 * 120.68740 * 359.97438 * 22 21 20 24 24 C 1.36738 * 120.41847 * 0.02562 * 23 22 21 25 25 C 1.39413 * 119.71443 * 359.97438 * 24 23 22 26 26 C 1.47020 * 108.70489 * 335.86786 * 13 12 11 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00670 * 300.69875 * 10 9 7 29 29 H 1.08989 * 111.00516 * 324.20630 * 11 9 7 30 30 H 1.08995 * 111.00355 * 88.06613 * 11 9 7 31 31 H 1.09003 * 110.36279 * 155.84748 * 12 11 9 32 32 H 1.08993 * 110.36858 * 278.06200 * 12 11 9 33 33 H 1.09001 * 109.46622 * 299.99685 * 16 14 13 34 34 H 1.09000 * 109.47474 * 59.99408 * 16 14 13 35 35 H 1.08002 * 124.92037 * 0.02562 * 18 17 16 36 36 H 1.08000 * 120.08759 * 359.95759 * 21 20 19 37 37 H 1.07995 * 119.65779 * 179.97438 * 22 21 20 38 38 H 1.08003 * 119.79014 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.14437 * 180.02562 * 24 23 22 40 40 H 1.09002 * 109.88085 * 241.63975 * 26 13 12 41 41 H 1.09002 * 109.87937 * 120.47931 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4499 -2.6130 -1.1832 11 6 0.3758 -2.6334 1.2688 12 6 0.2712 -4.1723 1.4134 13 7 1.5924 -4.6806 1.0020 14 6 2.1329 -5.8570 1.3769 15 8 3.2326 -6.1744 0.9757 16 6 1.3709 -6.7781 2.2945 17 6 2.1894 -8.0160 2.5567 18 6 2.1085 -9.1862 1.9092 19 8 2.9968 -10.0587 2.4165 20 6 3.6948 -9.5016 3.4262 21 6 4.7011 -9.9667 4.2640 22 6 5.2297 -9.1348 5.2276 23 6 4.7679 -7.8344 5.3712 24 6 3.7784 -7.3572 4.5570 25 6 3.2316 -8.1839 3.5766 26 6 2.2231 -3.6915 0.1158 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2040 -1.9078 -1.2839 29 1 0.8733 -2.1928 2.1327 30 1 -0.6071 -2.1877 1.1164 31 1 0.0663 -4.4428 2.4493 32 1 -0.5080 -4.5627 0.7589 33 1 1.1707 -6.2680 3.2368 34 1 0.4277 -7.0591 1.8260 35 1 1.4298 -9.3972 1.0960 36 1 5.0679 -10.9772 4.1605 37 1 6.0115 -9.4990 5.8776 38 1 5.1927 -7.1949 6.1309 39 1 3.4225 -6.3441 4.6724 40 1 2.3953 -4.1308 -0.8668 41 1 3.1675 -3.3577 0.5456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:03 Heat of formation + Delta-G solvation = -53.483242 kcal Electronic energy + Delta-G solvation = -25728.510872 eV Core-core repulsion = 21960.750328 eV Total energy + Delta-G solvation = -3767.760543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.48170 -39.46723 -37.90084 -37.32236 -34.34322 -33.87594 -32.24409 -30.73575 -30.20111 -29.58762 -28.58338 -27.53287 -24.95156 -23.37152 -22.44434 -22.33560 -20.59667 -19.63574 -18.69030 -17.40773 -17.30620 -16.99132 -16.65726 -15.95677 -15.86058 -15.37868 -14.97927 -14.83330 -14.23186 -14.18405 -13.84303 -13.83890 -13.15589 -13.02506 -12.68024 -12.34916 -12.31176 -12.11005 -12.02103 -11.72328 -11.47020 -11.40444 -11.38716 -10.93821 -10.90766 -10.65269 -10.54159 -10.15995 -10.08001 -9.47811 -9.30797 -8.70734 -8.67954 -8.26738 -8.17892 -8.03258 -6.32149 -4.39910 0.87280 1.31341 2.26438 2.76260 3.04371 3.19920 3.24616 3.28235 3.53825 3.72386 4.24333 4.40450 4.51071 4.81173 4.87892 4.91948 4.97823 5.08552 5.26397 5.32851 5.39799 5.45411 5.53534 5.56375 5.71835 5.83440 5.90188 5.98186 6.15646 6.17680 6.21662 6.36835 6.39970 6.42785 6.57443 6.67024 6.87797 6.94215 7.12021 7.26988 7.31952 7.69758 7.98181 8.09089 8.60586 8.64288 9.26908 9.35814 10.75132 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.023376 B = 0.002978 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.540011 B = 9398.677282 C =10042.765136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.247 3.753 10 O -0.586 6.586 11 C -0.134 4.134 12 C 0.093 3.907 13 N -0.609 5.609 14 C 0.521 3.479 15 O -0.545 6.545 16 C -0.066 4.066 17 C -0.151 4.151 18 C 0.015 3.985 19 O -0.194 6.194 20 C 0.050 3.950 21 C -0.109 4.109 22 C -0.098 4.098 23 C -0.138 4.138 24 C -0.065 4.065 25 C -0.111 4.111 26 C 0.124 3.876 27 H 0.269 0.731 28 H 0.383 0.617 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.207 0.793 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.060 0.940 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 -15.095 9.895 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.173 4.173 12 C -0.029 4.029 13 N -0.343 5.343 14 C 0.308 3.692 15 O -0.423 6.423 16 C -0.105 4.105 17 C -0.153 4.153 18 C -0.050 4.050 19 O -0.095 6.095 20 C 0.003 3.997 21 C -0.128 4.128 22 C -0.116 4.116 23 C -0.156 4.156 24 C -0.083 4.083 25 C -0.112 4.112 26 C 0.002 3.998 27 H 0.079 0.921 28 H 0.233 0.767 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.223 0.777 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.078 0.922 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.784 -16.009 9.521 18.712 hybrid contribution -0.086 1.706 0.044 1.709 sum 1.698 -14.303 9.565 17.290 Atomic orbital electron populations 1.69681 1.05925 1.27774 1.50174 1.24985 0.95046 0.99518 0.93441 0.86471 0.79557 0.82018 0.78928 1.19979 1.21093 1.20046 1.21495 0.93690 0.90241 1.52038 0.91832 1.19444 0.86928 0.90700 0.82237 1.86119 1.53822 1.54328 1.45226 1.23291 1.02906 0.90141 1.00957 1.22530 0.84352 0.97746 0.98305 1.48660 1.19385 1.18005 1.48212 1.20055 0.86393 0.80920 0.81798 1.90691 1.20615 1.74227 1.56801 1.19961 0.97876 0.92051 1.00655 1.20475 1.00348 0.95660 0.98784 1.23673 0.94102 0.88150 0.99080 1.83985 1.43385 1.40273 1.41850 1.19603 0.96646 0.92227 0.91271 1.19892 0.96119 1.00983 0.95787 1.20885 0.99589 0.93660 0.97456 1.20758 0.98136 0.96113 1.00597 1.20317 0.95634 0.99022 0.93350 1.19741 0.98637 0.94416 0.98404 1.22048 0.96659 0.88355 0.92731 0.92133 0.76682 0.91468 0.89337 0.92146 0.91853 0.88048 0.87949 0.77658 0.85250 0.84977 0.85437 0.85707 0.92206 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.51 10.66 55.43 0.59 -21.92 16 2 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 3 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.85 8.21 -34.44 -0.28 -14.13 16 8 H 0.06 1.66 7.57 -52.49 -0.40 1.26 16 9 C 0.25 5.84 0.85 -89.94 -0.08 5.76 16 10 O -0.59 -14.39 13.09 -35.23 -0.46 -14.86 16 11 C -0.13 -2.79 5.48 -24.58 -0.13 -2.93 16 12 C 0.09 1.59 6.68 -2.53 -0.02 1.58 16 13 N -0.61 -11.69 3.33 -170.52 -0.57 -12.25 16 14 C 0.52 9.52 7.84 -10.98 -0.09 9.44 16 15 O -0.55 -12.04 16.36 5.55 0.09 -11.94 16 16 C -0.07 -0.87 5.26 -29.03 -0.15 -1.03 16 17 C -0.15 -2.13 4.85 -102.66 -0.50 -2.63 16 18 C 0.01 0.19 11.89 29.24 0.35 0.53 16 19 O -0.19 -2.67 10.58 3.91 0.04 -2.63 16 20 C 0.05 0.69 7.42 -38.47 -0.29 0.41 16 21 C -0.11 -1.24 10.07 -39.46 -0.40 -1.63 16 22 C -0.10 -0.98 10.01 -39.54 -0.40 -1.37 16 23 C -0.14 -1.51 9.98 -39.94 -0.40 -1.90 16 24 C -0.07 -0.86 10.05 -39.69 -0.40 -1.26 16 25 C -0.11 -1.63 6.38 -105.16 -0.67 -2.30 16 26 C 0.12 2.77 6.22 -3.07 -0.02 2.75 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.38 9.39 7.41 45.56 0.34 9.73 16 29 H 0.07 1.44 8.04 -51.94 -0.42 1.03 16 30 H 0.09 1.91 7.55 -51.93 -0.39 1.52 16 31 H 0.06 0.84 7.48 -51.93 -0.39 0.45 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.19 7.85 -51.93 -0.41 0.78 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.21 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 41 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -30.65 347.83 -8.22 -38.88 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.58 Total: 11.47 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -3.56 Total: -6.97 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.02 Total: -34.17 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.33 Total: -29.43 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.65 -8.22 -38.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.607 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds