Wall clock time and date at job start Tue Mar 31 2020 10:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42897 * 110.63957 * 61.40714 * 9 7 2 11 11 C 1.55160 * 110.71656 * 298.26718 * 9 7 2 12 12 C 1.54913 * 101.57624 * 206.13323 * 11 9 7 13 13 N 1.47423 * 104.83089 * 37.01185 * 12 11 9 14 14 C 1.34780 * 125.64675 * 155.83077 * 13 12 11 15 15 O 1.21284 * 120.00326 * 180.02562 * 14 13 12 16 16 C 1.50703 * 120.00093 * 0.02957 * 14 13 12 17 17 C 1.50701 * 109.47210 * 179.97438 * 16 14 13 18 18 C 1.33993 * 126.90601 * 264.68047 * 17 16 14 19 19 O 1.34453 * 110.15096 * 179.88780 * 18 17 16 20 20 C 1.34803 * 110.88831 * 0.39394 * 19 18 17 21 21 C 1.38953 * 133.49349 * 179.78791 * 20 19 18 22 22 C 1.37842 * 119.81624 * 179.97438 * 21 20 19 23 23 C 1.38744 * 120.68740 * 359.97438 * 22 21 20 24 24 C 1.36738 * 120.41847 * 0.02562 * 23 22 21 25 25 C 1.39413 * 119.71443 * 359.97438 * 24 23 22 26 26 C 1.47020 * 108.70489 * 335.86786 * 13 12 11 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00670 * 300.69875 * 10 9 7 29 29 H 1.08989 * 111.00516 * 324.20630 * 11 9 7 30 30 H 1.08995 * 111.00355 * 88.06613 * 11 9 7 31 31 H 1.09003 * 110.36279 * 155.84748 * 12 11 9 32 32 H 1.08993 * 110.36858 * 278.06200 * 12 11 9 33 33 H 1.09001 * 109.46622 * 299.99685 * 16 14 13 34 34 H 1.09000 * 109.47474 * 59.99408 * 16 14 13 35 35 H 1.08002 * 124.92037 * 0.02562 * 18 17 16 36 36 H 1.08000 * 120.08759 * 359.95759 * 21 20 19 37 37 H 1.07995 * 119.65779 * 179.97438 * 22 21 20 38 38 H 1.08003 * 119.79014 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.14437 * 180.02562 * 24 23 22 40 40 H 1.09002 * 109.88085 * 241.63975 * 26 13 12 41 41 H 1.09002 * 109.87937 * 120.47931 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4499 -2.6130 -1.1832 11 6 0.3758 -2.6334 1.2688 12 6 0.2712 -4.1723 1.4134 13 7 1.5924 -4.6806 1.0020 14 6 2.1329 -5.8570 1.3769 15 8 3.2326 -6.1744 0.9757 16 6 1.3709 -6.7781 2.2945 17 6 2.1894 -8.0160 2.5567 18 6 2.1085 -9.1862 1.9092 19 8 2.9968 -10.0587 2.4165 20 6 3.6948 -9.5016 3.4262 21 6 4.7011 -9.9667 4.2640 22 6 5.2297 -9.1348 5.2276 23 6 4.7679 -7.8344 5.3712 24 6 3.7784 -7.3572 4.5570 25 6 3.2316 -8.1839 3.5766 26 6 2.2231 -3.6915 0.1158 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2040 -1.9078 -1.2839 29 1 0.8733 -2.1928 2.1327 30 1 -0.6071 -2.1877 1.1164 31 1 0.0663 -4.4428 2.4493 32 1 -0.5080 -4.5627 0.7589 33 1 1.1707 -6.2680 3.2368 34 1 0.4277 -7.0591 1.8260 35 1 1.4298 -9.3972 1.0960 36 1 5.0679 -10.9772 4.1605 37 1 6.0115 -9.4990 5.8776 38 1 5.1927 -7.1949 6.1309 39 1 3.4225 -6.3441 4.6724 40 1 2.3953 -4.1308 -0.8668 41 1 3.1675 -3.3577 0.5456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:03 Heat of formation + Delta-G solvation = -73.123871 kcal Electronic energy + Delta-G solvation = -25729.362553 eV Core-core repulsion = 21960.750328 eV Total energy + Delta-G solvation = -3768.612225 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.41969 -41.00551 -38.99779 -38.76318 -36.09306 -34.91732 -34.20745 -31.86986 -31.38275 -30.77011 -30.10843 -28.83117 -26.73400 -24.28113 -23.96706 -23.23341 -21.92283 -21.19124 -20.06536 -19.17150 -18.31085 -18.10831 -17.97084 -17.02618 -17.01665 -16.90369 -16.53531 -16.28595 -15.98912 -15.30286 -15.07340 -14.83209 -14.70933 -14.29553 -13.89594 -13.78904 -13.58374 -13.34266 -13.23731 -13.21983 -13.10889 -12.98487 -12.67187 -12.54971 -12.41534 -12.29075 -11.97553 -11.81677 -11.27216 -11.18049 -10.77036 -10.61287 -10.14577 -9.61643 -9.59044 -9.10588 -8.25506 -6.39998 -0.01529 0.40533 1.27404 1.41853 1.43899 1.50771 1.63187 1.87335 2.14507 2.39548 2.78102 2.99759 3.50561 3.57421 3.65957 3.89756 3.90358 4.01984 4.12107 4.16374 4.31991 4.40567 4.43328 4.47338 4.53074 4.58286 4.61208 4.68844 4.70901 4.92661 4.98835 5.18969 5.25852 5.27441 5.35554 5.46031 5.48094 5.52734 5.55048 5.72120 5.76214 6.07316 6.19421 6.59253 6.66173 7.16642 7.30468 7.40312 8.79910 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.023376 B = 0.002978 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.540011 B = 9398.677282 C =10042.765136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.040 3.960 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.567 4.567 8 H 0.048 0.952 9 C 0.236 3.764 10 O -0.593 6.593 11 C -0.126 4.126 12 C 0.102 3.898 13 N -0.612 5.612 14 C 0.518 3.482 15 O -0.590 6.590 16 C -0.051 4.051 17 C -0.180 4.180 18 C 0.019 3.981 19 O -0.204 6.204 20 C 0.020 3.980 21 C -0.115 4.115 22 C -0.094 4.094 23 C -0.136 4.136 24 C -0.093 4.093 25 C -0.139 4.139 26 C 0.130 3.870 27 H 0.272 0.728 28 H 0.380 0.620 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.137 0.863 35 H 0.240 0.760 36 H 0.153 0.847 37 H 0.169 0.831 38 H 0.153 0.847 39 H 0.124 0.876 40 H 0.040 0.960 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.387 -16.028 11.515 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.162 4.162 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.605 4.605 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.402 6.402 11 C -0.165 4.165 12 C -0.019 4.019 13 N -0.345 5.345 14 C 0.309 3.691 15 O -0.471 6.471 16 C -0.090 4.090 17 C -0.182 4.182 18 C -0.045 4.045 19 O -0.105 6.105 20 C -0.027 4.027 21 C -0.133 4.133 22 C -0.111 4.111 23 C -0.154 4.154 24 C -0.111 4.111 25 C -0.140 4.140 26 C 0.007 3.993 27 H 0.082 0.918 28 H 0.230 0.770 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.256 0.744 36 H 0.170 0.830 37 H 0.187 0.813 38 H 0.171 0.829 39 H 0.142 0.858 40 H 0.058 0.942 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.233 -16.951 11.162 20.333 hybrid contribution 0.154 1.980 -0.460 2.038 sum 1.387 -14.972 10.702 18.455 Atomic orbital electron populations 1.69730 1.06391 1.28486 1.49544 1.25549 0.95899 1.01766 0.92987 0.85642 0.78572 0.79057 0.78518 1.20480 1.20069 1.19912 1.21710 0.93325 0.92005 1.53467 0.93397 1.19565 0.87501 0.90263 0.83111 1.86103 1.53839 1.54132 1.46096 1.23070 1.01459 0.93150 0.98789 1.22584 0.83428 0.94668 1.01240 1.48724 1.19985 1.17952 1.47792 1.21020 0.86043 0.80627 0.81424 1.90667 1.22830 1.75069 1.58489 1.19965 0.98104 0.90668 1.00282 1.20691 1.01330 0.96467 0.99710 1.24365 0.93612 0.87653 0.98920 1.83970 1.43706 1.40778 1.42054 1.20082 0.97885 0.92549 0.92151 1.20350 0.95297 1.02348 0.95327 1.21357 0.99665 0.93002 0.97115 1.21159 0.97041 0.96950 1.00261 1.20534 0.97054 0.99211 0.94285 1.20097 0.99462 0.95193 0.99251 1.21727 0.96156 0.88948 0.92469 0.91811 0.76966 0.92580 0.90096 0.87800 0.90435 0.86055 0.84484 0.74357 0.82976 0.81311 0.82931 0.85815 0.94200 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.12 10.66 21.45 0.23 -44.89 16 2 C 0.04 2.02 5.27 84.66 0.45 2.46 16 3 Si 0.96 41.06 29.54 68.60 2.03 43.09 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.57 -29.98 8.21 25.60 0.21 -29.77 16 8 H 0.05 2.60 7.57 -2.91 -0.02 2.58 16 9 C 0.24 11.31 0.85 -10.35 -0.01 11.30 16 10 O -0.59 -29.52 13.09 -148.98 -1.95 -31.47 16 11 C -0.13 -5.17 5.48 31.99 0.18 -4.99 16 12 C 0.10 3.26 6.68 86.86 0.58 3.84 16 13 N -0.61 -23.04 3.33 -811.80 -2.70 -25.74 16 14 C 0.52 18.57 7.84 87.66 0.69 19.25 16 15 O -0.59 -26.46 16.36 -3.04 -0.05 -26.51 16 16 C -0.05 -1.24 5.26 29.10 0.15 -1.09 16 17 C -0.18 -4.88 4.85 -18.60 -0.09 -4.97 16 18 C 0.02 0.45 11.89 66.85 0.79 1.25 16 19 O -0.20 -5.49 10.58 -8.91 -0.09 -5.58 16 20 C 0.02 0.55 7.42 22.99 0.17 0.72 16 21 C -0.12 -2.42 10.07 22.35 0.23 -2.19 16 22 C -0.09 -1.65 10.01 22.30 0.22 -1.42 16 23 C -0.14 -2.74 9.98 22.04 0.22 -2.52 16 24 C -0.09 -2.40 10.05 22.20 0.22 -2.18 16 25 C -0.14 -4.03 6.38 -20.21 -0.13 -4.16 16 26 C 0.13 6.00 6.22 86.73 0.54 6.54 16 27 H 0.27 12.98 8.31 -92.70 -0.77 12.21 16 28 H 0.38 18.89 7.41 -74.06 -0.55 18.34 16 29 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 30 H 0.08 3.43 7.55 -2.39 -0.02 3.41 16 31 H 0.10 2.46 7.48 -2.39 -0.02 2.44 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.12 2.48 7.85 -2.39 -0.02 2.46 16 34 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.24 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 39 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 41 H 0.05 2.59 7.66 -2.39 -0.02 2.57 16 Total: -1.00 -68.79 347.83 2.39 -66.40 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.51 Total: 32.64 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 4.42 Total: -7.93 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -2.47 Total: -70.64 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -2.09 Total: -63.56 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -68.79 2.39 -66.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.725 kcal (2) G-P(sol) polarization free energy of solvation -68.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds