Wall clock time and date at job start Tue Mar 31 2020 10:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48498 * 109.47359 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47037 * 300.00222 * 3 2 1 6 6 H 1.48501 * 109.47138 * 59.99854 * 3 2 1 7 7 C 1.38949 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00194 * 198.99956 * 7 2 1 9 9 N 1.37101 * 119.99863 * 19.26569 * 7 2 1 10 10 C 1.34773 * 120.00048 * 39.48296 * 9 7 2 11 11 O 1.21296 * 119.99650 * 5.17130 * 10 9 7 12 12 C 1.50692 * 120.00447 * 185.17131 * 10 9 7 13 13 H 1.09006 * 109.38185 * 52.77519 * 12 10 9 14 14 C 1.52591 * 109.38659 * 293.09415 * 12 10 9 15 15 C 1.52588 * 110.64589 * 169.85579 * 14 12 10 16 16 C 1.53036 * 109.98832 * 69.98089 * 15 14 12 17 17 S 1.81669 * 108.99917 * 296.35375 * 16 15 14 18 18 O 1.42103 * 108.66477 * 299.96807 * 17 16 15 19 19 O 1.42094 * 108.66497 * 168.62919 * 17 16 15 20 20 C 1.53041 * 109.39068 * 172.56227 * 12 10 9 21 21 C 1.46505 * 120.00096 * 219.48271 * 9 7 2 22 22 C 1.54264 * 110.03173 * 53.04888 * 21 9 7 23 23 C 1.54889 * 104.19647 * 217.10315 * 22 21 9 24 24 C 1.54894 * 102.74380 * 37.94596 * 23 22 21 25 25 C 1.53878 * 110.02745 * 295.88539 * 21 9 7 26 26 H 0.96997 * 120.00071 * 4.94750 * 1 2 3 27 27 H 1.09007 * 109.23757 * 290.15139 * 14 12 10 28 28 H 1.08996 * 109.24340 * 49.54993 * 14 12 10 29 29 H 1.09001 * 109.38286 * 309.82715 * 15 14 12 30 30 H 1.08996 * 109.38508 * 190.14403 * 15 14 12 31 31 H 1.08999 * 109.54984 * 176.49784 * 16 15 14 32 32 H 1.09001 * 109.62872 * 56.25452 * 16 15 14 33 33 H 1.08999 * 109.54755 * 303.66802 * 20 12 10 34 34 H 1.09005 * 109.54509 * 63.94940 * 20 12 10 35 35 H 1.09001 * 110.01451 * 174.49671 * 21 9 7 36 36 H 1.09000 * 110.48971 * 335.78518 * 22 21 9 37 37 H 1.09005 * 110.48185 * 98.43238 * 22 21 9 38 38 H 1.09000 * 110.75692 * 279.63592 * 23 22 21 39 39 H 1.08997 * 110.75488 * 156.25573 * 23 22 21 40 40 H 1.09008 * 110.48349 * 203.37374 * 24 23 22 41 41 H 1.08998 * 110.48512 * 80.73699 * 24 23 22 42 42 H 1.09003 * 110.03035 * 238.56606 * 25 21 9 43 43 H 1.09000 * 110.03788 * 359.94959 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0448 -1.2289 0.3040 9 7 1.3810 -2.3572 -0.3928 10 6 0.5261 -2.3386 -1.4346 11 8 0.3832 -1.3239 -2.0836 12 6 -0.2521 -3.5782 -1.7930 13 1 -0.7731 -3.9465 -0.9092 14 6 0.7088 -4.6517 -2.2959 15 6 -0.0058 -5.9933 -2.4297 16 6 -0.9982 -5.9436 -3.5936 17 16 -2.2815 -4.7119 -3.2245 18 8 -2.9493 -5.0948 -2.0300 19 8 -3.0403 -4.4786 -4.4030 20 6 -1.2740 -3.2397 -2.8808 21 6 1.6393 -3.6106 0.3204 22 6 1.4066 -3.4156 1.8329 23 6 2.5080 -4.2758 2.5007 24 6 3.7247 -4.0579 1.5673 25 6 3.1133 -4.0189 0.1515 26 1 -0.4850 0.8369 -0.0724 27 1 1.1013 -4.3552 -3.2686 28 1 1.5345 -4.7531 -1.5917 29 1 -0.5421 -6.2112 -1.5061 30 1 0.7285 -6.7775 -2.6135 31 1 -1.4589 -6.9231 -3.7222 32 1 -0.4759 -5.6633 -4.5084 33 1 -1.9172 -2.4295 -2.5375 34 1 -0.7530 -2.9342 -3.7883 35 1 0.9880 -4.3974 -0.0601 36 1 1.5243 -2.3667 2.1049 37 1 0.4174 -3.7755 2.1161 38 1 2.2190 -5.3266 2.5197 39 1 2.7232 -3.9149 3.5064 40 1 4.4274 -4.8864 1.6568 41 1 4.2168 -3.1127 1.7965 42 1 3.1773 -5.0043 -0.3100 43 1 3.6362 -3.2850 -0.4618 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593477668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:00 Heat of formation + Delta-G solvation = -102.235295 kcal Electronic energy + Delta-G solvation = -26501.426966 eV Core-core repulsion = 22866.996326 eV Total energy + Delta-G solvation = -3634.430640 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.134 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -39.53941 -37.27082 -36.80578 -35.95104 -35.85177 -33.41524 -31.92436 -31.15036 -28.20695 -27.68988 -26.83108 -25.40304 -23.31550 -21.33692 -20.23283 -19.80209 -19.16294 -18.66669 -17.21514 -16.29131 -16.06197 -15.73079 -15.55820 -15.25966 -14.71252 -14.61631 -14.33200 -13.93197 -13.62012 -13.33688 -12.92807 -12.87458 -12.64677 -12.57903 -11.99882 -11.87480 -11.69885 -11.48460 -11.33414 -11.27926 -11.15330 -10.88653 -10.84536 -10.72165 -10.66007 -10.52541 -10.47013 -10.43056 -10.19114 -10.14751 -10.03526 -9.75107 -8.78518 -8.09149 -7.14271 -6.12930 -3.85931 0.17475 2.80132 3.29284 3.38504 3.40299 3.76952 4.01673 4.07926 4.28744 4.59126 4.61453 4.83258 4.90488 4.95098 5.09104 5.12587 5.16947 5.29927 5.40282 5.45207 5.47459 5.56977 5.76251 5.80370 5.90523 5.96632 5.98539 6.03723 6.10775 6.15866 6.22032 6.33127 6.34293 6.38801 6.42313 6.56312 6.73359 6.89816 7.15107 7.61578 8.23071 9.02942 9.14917 9.64670 10.25441 10.94783 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.005820 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.377250 B = 4809.741181 C = 6161.895502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.069 3.931 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.334 4.334 8 H 0.080 0.920 9 N -0.445 5.445 10 C 0.486 3.514 11 O -0.532 6.532 12 C -0.094 4.094 13 H 0.098 0.902 14 C -0.146 4.146 15 C -0.107 4.107 16 C -0.605 4.605 17 S 2.408 3.592 18 O -0.941 6.941 19 O -0.952 6.952 20 C -0.563 4.563 21 C 0.119 3.881 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.134 4.134 26 H 0.263 0.737 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.923 -13.097 -1.599 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.167 5.167 10 C 0.272 3.728 11 O -0.409 6.409 12 C -0.117 4.117 13 H 0.116 0.884 14 C -0.183 4.183 15 C -0.145 4.145 16 C -0.734 4.734 17 S 2.592 3.408 18 O -0.938 6.938 19 O -0.949 6.949 20 C -0.694 4.694 21 C 0.014 3.986 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.173 4.173 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.727 -12.559 -1.891 12.817 hybrid contribution 1.084 0.918 -0.092 1.424 sum 2.811 -11.640 -1.983 12.138 Atomic orbital electron populations 1.69874 1.06432 1.27638 1.42489 1.25102 0.94707 0.99210 0.95084 0.86296 0.79892 0.83350 0.77407 1.19692 1.20841 1.21359 1.18880 0.94696 0.84539 1.47996 0.90266 1.43359 1.41437 1.06490 1.25389 1.19301 0.83777 0.87790 0.81957 1.90515 1.65540 1.33254 1.51634 1.20993 0.95774 0.97809 0.97168 0.88409 1.22034 0.99603 0.92626 1.04054 1.21291 0.97925 0.99096 0.96221 1.30235 1.16871 1.17890 1.08411 1.08221 0.77870 0.79356 0.75332 1.93570 1.71141 1.81944 1.47143 1.93565 1.67453 1.84881 1.49005 1.29963 1.12312 1.18640 1.08521 1.21936 0.94901 0.88779 0.93026 1.22669 0.97056 1.02174 0.94697 1.22453 0.96119 0.99215 0.98341 1.22262 0.97130 1.00897 0.95225 1.22539 0.97116 1.00367 0.97240 0.92649 0.90401 0.88212 0.89748 0.89587 0.85290 0.85012 0.84054 0.84651 0.90568 0.88923 0.92725 0.92394 0.92274 0.92824 0.91628 0.92745 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.68 11.53 55.50 0.64 -23.04 16 2 C 0.07 1.86 4.36 -17.47 -0.08 1.78 16 3 Si 0.90 21.32 29.60 -169.99 -5.03 16.29 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.33 -8.49 7.28 -14.93 -0.11 -8.60 16 8 H 0.08 1.96 7.51 -52.48 -0.39 1.57 16 9 N -0.45 -10.06 2.46 -106.54 -0.26 -10.32 16 10 C 0.49 11.25 6.18 -10.99 -0.07 11.18 16 11 O -0.53 -14.61 13.65 5.54 0.08 -14.54 16 12 C -0.09 -1.63 1.53 -91.96 -0.14 -1.77 16 13 H 0.10 1.65 7.41 -51.93 -0.38 1.26 16 14 C -0.15 -1.88 4.34 -27.15 -0.12 -2.00 16 15 C -0.11 -1.06 5.73 -26.92 -0.15 -1.22 16 16 C -0.61 -5.75 6.35 37.18 0.24 -5.52 16 17 S 2.41 32.81 5.31 -107.50 -0.57 32.24 16 18 O -0.94 -15.65 17.94 -57.81 -1.04 -16.69 16 19 O -0.95 -15.71 18.10 -57.81 -1.05 -16.76 16 20 C -0.56 -8.97 4.91 37.18 0.18 -8.79 16 21 C 0.12 2.10 2.32 -66.81 -0.15 1.94 16 22 C -0.13 -2.23 6.40 -25.07 -0.16 -2.39 16 23 C -0.12 -1.70 6.91 -24.74 -0.17 -1.87 16 24 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 25 C -0.13 -2.04 5.58 -25.61 -0.14 -2.19 16 26 H 0.26 7.33 8.32 -40.82 -0.34 6.99 16 27 H 0.08 0.95 8.09 -51.92 -0.42 0.53 16 28 H 0.10 1.29 4.16 -51.93 -0.22 1.07 16 29 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.14 2.51 8.10 -51.93 -0.42 2.09 16 34 H 0.14 2.00 8.12 -51.92 -0.42 1.58 16 35 H 0.08 1.19 4.47 -51.93 -0.23 0.96 16 36 H 0.09 1.93 6.84 -51.93 -0.36 1.57 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.68 7.57 -51.93 -0.39 0.29 16 43 H 0.07 1.31 7.32 -51.93 -0.38 0.93 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -35.31 339.66 -9.71 -45.02 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.55 Total: 3.91 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -1.05 Total: -21.23 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.38 Total: -33.36 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -2.01 Total: -47.99 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Atomic # 16 Polarization: 32.81 SS G_CDS: -0.57 Total: 32.24 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.31 -9.71 -45.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593477668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.216 kcal (2) G-P(sol) polarization free energy of solvation -35.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds